BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0017.p (523 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, A... 594 e-168 B3K7P5.1 B3K7P5_9BACI Response regulator receiver 261 1e-67 B3KB77.1 B3KB77_9BACI Response regulator receiver 256 5e-66 B3KF78.1 B3KF78_9BACI Response regulator receiver 168 2e-39 Q9KB26.1 Q9KB26_BACHD BH2109 protein 160 4e-37 >B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, AraC family Length = 519 Score = 594 bits (1532), Expect = e-168, Method: Compositional matrix adjust. Identities = 301/521 (57%), Positives = 377/521 (72%), Gaps = 3/521 (0%) Query: 3 INVLLVDDEAVDLEWLRRRVLSSGLNITVVGTASSGFGALKIMEEAQVDIILSDIRMPIM 62 I VLLVDDEAVDLEW+RRRV S L + VVGTASSGF ALK+ME ++D+ILSDIRMPIM Sbjct: 2 ITVLLVDDEAVDLEWMRRRVTGSPLPLQVVGTASSGFEALKLMENERIDVILSDIRMPIM 61 Query: 63 TGTEFARRAKAVSPKTKIVFISGHEDFSYAKEAIEINASGYLLKPVQDKDLYEMLGTLCA 122 +GTEFAR+AK +P ++VFISGHEDF YAKEAI++NASGYLLKPV+D++L++ML T+ Sbjct: 62 SGTEFARKAKERNPHVQVVFISGHEDFQYAKEAIQMNASGYLLKPVKDQELHDMLETVYK 121 Query: 123 KMEQEREQDRSFSEALSLVNKELLLRWFDEASPDSAEPHLKSILTPLLQKGAAAAIVEID 182 ++E ER++ +EALSLVN+EL+L+W + + + H+ L LLQ GAAAA+VEID Sbjct: 122 QVESERKRHSIVTEALSLVNRELMLKWLGDTAEEHEREHIAPFLNSLLQYGAAAAVVEID 181 Query: 183 DLEWKMRDFSEEDARNITRQIAGVIKSFVEEGKLGTWIAVHHTRFVILSSFPQERFLNQL 242 D+EWK+ E++ R+ R I+ I+ FV + GT + R VILS +RF L Sbjct: 182 DVEWKI---PEQERRSQIRSISSFIEQFVGDHDGGTVLVSLDQRIVILSPISDDRFNAML 238 Query: 243 EELIRKVAEASPCTVTVGVGRYAADEAGLHESYRQAQAALSAKWLLGKNRLIRDTTQSSP 302 EEL+ +V ++ P T+T G G A + L SYRQAQAALSAKWLLGKNRLI+D + ++ Sbjct: 239 EELVGEVRQSFPVTITAGAGGSARNTDELRVSYRQAQAALSAKWLLGKNRLIKDISGTAR 298 Query: 303 RGTPGAQIELTVERLLEAIIQYDLVSIDDHLLELFTKDLPSAGRKEVYELIIRITSKLHA 362 +E VE++L AI+ YDLVSIDD LL+LF K+ + ++ Y+LIIR+TSKLHA Sbjct: 299 EDKLEPNVEENVEQMLAAILDYDLVSIDDRLLKLFDKNESVSQKQYAYDLIIRVTSKLHA 358 Query: 363 DXXXXXXXXXXXXXWESHQPDILFQFETIHDILSWXXXXXXXXXXXXYVKRQRQKRKLID 422 D W++ + +LFQFETI DILSW YVKRQ+QKRKL D Sbjct: 359 DLLQRNENLYELLKWDAQKAAVLFQFETIDDILSWLRRRFFELSELLYVKRQKQKRKLFD 418 Query: 423 EIMRYVEEHLEQKITLKEVAAHFDFTPNYLGYLFKEEYGLPFSEYVNERKTSRVSELLRD 482 IM +V+E LEQKITLKEVAAHFDFTPNYLG LFKEE G FS+++NER+ RV ELL D Sbjct: 419 NIMAFVDERLEQKITLKEVAAHFDFTPNYLGTLFKEETGTLFSDWLNERRMDRVRELLAD 478 Query: 483 PTLKIYEIAERMGYKNIIYFNRQFKQITGMTPGEYRKKHKI 523 P LK+YEIAER+GYKNIIYFNRQFKQ TGMTPGEYRKKHKI Sbjct: 479 PCLKVYEIAERVGYKNIIYFNRQFKQFTGMTPGEYRKKHKI 519 >B3K7P5.1 B3K7P5_9BACI Response regulator receiver Length = 525 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 161/523 (30%), Positives = 272/523 (52%), Gaps = 10/523 (1%) Query: 5 VLLVDDEAVDLEWLRRRVLSSGLNITVVGTASSGFGALKIMEEAQVDIILSDIRMPIMTG 64 VLLVDDE +DLE ++R + S L + V G+ ++ A +IMEE +DI++SD+ MP M+G Sbjct: 4 VLLVDDEELDLEGMKRFIPWSDLGMEVRGSVNNALAACEIMEEEPIDILVSDVNMPYMSG 63 Query: 65 TEFARRAKAVSPKTKIVFISGHEDFSYAKEAIEINASGYLLKPVQDKDLYEMLGTLCAKM 124 E AR A P +I+F+SG+++FSY ++A+ + A Y+LKP+ D +L L + + Sbjct: 64 LELARIALERRPNMRIIFVSGYQEFSYVQQAMSLKAYSYVLKPMNDSELVTSLLKVKRDL 123 Query: 125 EQE---REQDRSFSEALSLVNKELLLRWFDEASPDSAEPHLKSILTPLLQK---GAAAAI 178 + E RE + ++ + +V +LL+R E + E K ++ L + + Sbjct: 124 DDETKQREVEMAYQRMIPIVKSDLLIRLLREEETEDNESLSKLTVSCGLDRMNWPIRVVV 183 Query: 179 VEIDDLEWKMRDFSEEDARNITRQIAGVIKSFVEEGKLGTWIAVHHTRFVILSSFPQERF 238 +E+D+L W+ + S R ++R I + + + + R +L E Sbjct: 184 MELDNLLWR-QGGSFTSQREVSRIFLQQIHDVIARQGIVPYCKLSSQRVALL--LEDEAV 240 Query: 239 LNQLEELIRKVAEASPCTVTVGVGRYAADEAGLHESYRQAQAALSAKWLLGKNRLIR-DT 297 + ++ + + +P ++T G+ A L SYRQA A+ K LGK LI+ + Sbjct: 241 EPTVHKVYDAIQQLTPASITTGISGLAYAMEELQSSYRQAIEAVEGKMFLGKGSLIKYED 300 Query: 298 TQSSPRGTPGAQIELTVERLLEAIIQYDLVSIDDHLLELFTKDLPSAGRKEVYELIIRIT 357 ++ P ++ + +LL A+ Y+LV I D + LF R V+ + I Sbjct: 301 VRAEPGMLDSRMLDAHMNKLLAAMEGYELVRICDEVEGLFGSITNLRSRFSVHNMSNYII 360 Query: 358 SKLHADXXXXXXXXXXXXXWESHQPDILFQFETIHDILSWXXXXXXXXXXXXYVKRQRQK 417 +L E H DIL QF+TI+DI SW Y K + Sbjct: 361 WRLDQYLSSRNEDLFELLGMEIHHLDILMQFDTINDIRSWFVQRIFEISERLYEKNNSKD 420 Query: 418 RKLIDEIMRYVEEHLEQKITLKEVAAHFDFTPNYLGYLFKEEYGLPFSEYVNERKTSRVS 477 K I ++ + E + + IT+K++A HF F+P+++G+L KE+ G F+E + + + + Sbjct: 421 SKFIRNVIHTIRERMSENITIKDIAQHFSFSPSHIGFLIKEKSGSTFNELLVQLRMEKAQ 480 Query: 478 ELLRDPTLKIYEIAERMGYKNIIYFNRQFKQITGMTPGEYRKK 520 ELL+ P LKIYE+A+++GY+ + YF+RQFK+ GMTP E+RK+ Sbjct: 481 ELLKQPGLKIYEVADQVGYRYLPYFSRQFKERYGMTPLEFRKR 523 >B3KB77.1 B3KB77_9BACI Response regulator receiver Length = 524 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 160/529 (30%), Positives = 279/529 (52%), Gaps = 21/529 (3%) Query: 5 VLLVDDEAVDLEWLRRRVLSSGLNITVVGTASSGFGALKIMEEAQVDIILSDIRMPIMTG 64 VLL DDE +DLE ++ + L + V+ + ++GF A +++E +VDI+++D+RMP MTG Sbjct: 4 VLLADDEILDLEGMKSFIPWEDLGMKVIDSVNNGFAACEVLESEKVDILVTDVRMPNMTG 63 Query: 65 TEFARRAKAVSPKTKIVFISGHEDFSYAKEAIEINASGYLLKPVQDKDLYEMLGTL---C 121 E A+RA + + +I+F+SG++DF Y K+AI +NA Y+LKP++D++L + L + Sbjct: 64 LELAQRALKLQEELRIIFVSGYQDFGYVKQAIALNACSYVLKPMEDQELIDALTKVRMEL 123 Query: 122 AKMEQEREQDRSFSEALSLVNKELLL----RWFDEASPD--SAEPHLKSILTPLLQKGAA 175 ++ + +E + ++ + + ++ + LL R +D A D E L + P+ Sbjct: 124 DRLHERKETEEAYQQMIPILKNQYLLQILQRPYDGAILDIIKREYRLTELHWPV-----C 178 Query: 176 AAIVEIDDLE-WKMRDFSEEDARNITRQIAGVIKSFVEEGKLGTWIAVHHTRFVILSSFP 234 ++E+D++ W+ E+ + + + +E+ V R +L + Sbjct: 179 VILLELDNVSTWRTGSLDSEEKLSAIEEYFTRLHKLLEQRGFEYICKVTDQRTAVLLNGG 238 Query: 235 QERFLNQLEELIRKVAEASPCTVTVGVGRYAADEAGLHESYRQAQAALSAKWLLGKNRLI 294 + + +++ L+ ++ ++TVG GR LH SY +A AL K GK + I Sbjct: 239 RGK--EEIQALLEELKREYNYSMTVGEGRAVHQLEQLHTSYMEALDALDYKMFRGKGKWI 296 Query: 295 RDTTQSSPRGTPGAQIELTVERLLEAIIQYDLVSIDDHL--LELFTKDLPSAGRKEVYEL 352 + + +++ ++ L A+ +YD+V I D L ++L + S + + L Sbjct: 297 LYSEVPTEDREDVKSLDIRLDALFTAMTEYDIVRIYDELEAIQLLASSIRS--KFTIRNL 354 Query: 353 IIRITSKLHADXXXXXXXXXXXXXWESHQPDILFQFETIHDILSWXXXXXXXXXXXXYVK 412 + I KL E DIL QFET+ DI SW + Sbjct: 355 AVYIMVKLEGHLQAMNEELYRMAGLELKNLDILLQFETMDDIFSWLRMKAMEISEMLKNR 414 Query: 413 RQRQKRKLIDEIMRYVEEHLEQKITLKEVAAHFDFTPNYLGYLFKEEYGLPFSEYVNERK 472 + + +L++EI+ ++ + + ITL+++A F F+PNYLG LFKEE G FS+YV + + Sbjct: 415 KSTKNGRLVEEIIENIQARMHENITLRDMANRFSFSPNYLGVLFKEETGHNFSDYVIKLR 474 Query: 473 TSRVSELLRDPTLKIYEIAERMGYKNIIYFNRQFKQITGMTPGEYRKKH 521 R +LL+ LKIYEIA + GY+ + YF+RQFK++ GMTP EYR+KH Sbjct: 475 MERARDLLKTTKLKIYEIASQTGYQYLPYFSRQFKEMYGMTPLEYRRKH 523 >B3KF78.1 B3KF78_9BACI Response regulator receiver Length = 546 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 145/547 (26%), Positives = 242/547 (44%), Gaps = 35/547 (6%) Query: 5 VLLVDDEAVDLEWLRRRVLSSGLNITVVGTASSGFGALKIMEEAQVDIILSDIRMPIMTG 64 +L+VDDE LR + I V G A G AL+++ Q D+IL+D+RMP M G Sbjct: 4 LLIVDDEPAVRAGLRAYFDWAAYGIEVAGEADDGDVALEMIARDQPDLILTDVRMPNMDG 63 Query: 65 TEFARRAKAVSPKTKIVFISGHEDFSYAKEAIEINASGYLLKPVQDKDLYEMLGTLCAKM 124 ++ + P KI+F+SGH+D Y K A++++A Y+ KPV ++L ++ + A + Sbjct: 64 ITMSQCISSEYPAMKIIFVSGHDDADYLKSAMKVSAVDYIFKPVNLQELSTVIKRVVADL 123 Query: 125 EQE-------REQDRSFSEALSLVNKELLLRWFDEASPDSAEPHLKSILTPLLQKGAA-- 175 + E +E E + L+ ++ LL E +P S S L L A+ Sbjct: 124 DAESSERIYKQELLVKLKEGMPLLREKFLLSMIREGAPKSELAERVSFLGLDLPVNASYW 183 Query: 176 AAIVEIDDLEWKMRDFSEEDAR-------NITRQIAGV-IKSFVEEGKLGTWIAVHHTRF 227 +V +DDL M SE D + NI ++ ++ + E + G ++ V Sbjct: 184 VMVVCVDDLADVMASRSERDRQLLWYSVLNIYEELLDAHLRGYAFEQRTGEFVGVLKVSE 243 Query: 228 VILSSFPQERFLNQLE--ELIRKVAEASPCTVTVGVGRYAADEAGLHESYRQAQAALSAK 285 S + +L + VT+G+ A +GL +Y+QA+ A+ K Sbjct: 244 PGGDSVSEAAEALFALAGDLRSNLERWLKIGVTIGISDMAGGLSGLAPAYKQAREAVDYK 303 Query: 286 WLLGKNRLIRDTTQSSPRGTPGA----QIELTVERLLEAIIQYDLVSIDDHLLELFTK-- 339 W LGKNR+I + S GA EL E+L+ A+ D I + + +F Sbjct: 304 WYLGKNRIITMDSLESAEPEEGAMRKYDYELN-EKLISALKADDEDKISEAVEMIFASLS 362 Query: 340 ----DLPSAGRKEVYELIIRITSKLHADXXXXXXXXXXXXXWESHQPDILFQFETIHDIL 395 D GR +L++ I L E + L+ ET+ D+ Sbjct: 363 YTRPDGLKYGRNLCMQLVLAIGQLL----MELGAGDPELEVMEGELTEALYAKETLKDMR 418 Query: 396 SWXXXXXXXXXXXXYVKRQRQKRKLIDEIMRYVEEHLEQ-KITLKEVAAHFDFTPNYLGY 454 KR + +I+ + Y++++ +T+ ++ + Y+ Sbjct: 419 GLIESYLATVGEHIREKRTGRVANVIERVRGYIDQNYANGGLTVADIGKAVYLSSTYVSL 478 Query: 455 LFKEEYGLPFSEYVNERKTSRVSELLRDPTLKIYEIAERMGYKNIIYFNRQFKQITGMTP 514 LFK+E G EY+ + + + ELLRDP K Y+I +GY + YF++ FK++TG+TP Sbjct: 479 LFKQETGQTVGEYLTKVRVDKAKELLRDPQYKFYDICYAIGYTDPSYFSKLFKKVTGVTP 538 Query: 515 GEYRKKH 521 YR H Sbjct: 539 SAYRGSH 545 >Q9KB26.1 Q9KB26_BACHD BH2109 protein Length = 525 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 137/540 (25%), Positives = 248/540 (45%), Gaps = 45/540 (8%) Query: 5 VLLVDDEAVDLEWLRRRVLSSGLNITVVGTASSGFGALKIMEEAQVDIILSDIRMPIMTG 64 VLL DDE L+ + V A +G A K+++E + D++++DIRMP+ G Sbjct: 4 VLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPVFDG 63 Query: 65 TEFARRA-KAVSPKTKIVFISGHEDFSYAKEAIEINASGYLLKPVQDKDLYEMLGTLCAK 123 + ++ + +S TK + ISG+ DFSYA++A+ A ++LKP+ +L L L A Sbjct: 64 LQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLKPIDQDELEAALIKLAAT 123 Query: 124 MEQEREQ---------DRSFSEALSLVNKEL-LLRWFDEASPDSAEPHLKSILTPLLQKG 173 ++QE+ D+ F +L KE + RW A + H L Sbjct: 124 LDQEKATNSDQEKVLLDQIFIHSLGENKKENEVRRW--AAKLNINNRHFYYYL------- 174 Query: 174 AAAAIVEIDDLEWKMRDFSEEDARNITRQI--AGVIKSFVEEGKLGTWIAVHHTRFVILS 231 ++E+++L + F E + R++ V + E + + H ++++ Sbjct: 175 ----LLEVNNLSLD-KGFINEQYKEPIRKVIRETVARQAATEEYTAIYEQLDHAYGLLIT 229 Query: 232 SFPQERFLNQLEELIRK----VAEASPCTVTVGVGRYAADEAGLHESYRQAQAALSAKWL 287 S ++F Q+E L K + + + +TV VG D + + +SY A + + K++ Sbjct: 230 SEHLKKFNGQIEPLAEKLRKDIQDFTNIPLTVYVGAKTDDLSTIKKSYETANSLRNYKYI 289 Query: 288 LG-KNRLIRDTTQS--SPRGTPGAQIELTVERLLEAIIQYDLVSIDDHLLELF--TKDLP 342 KN I + T+S + + +T+ +E +V+I D + F K +P Sbjct: 290 FNEKNVFIHEQTESVDTTYDELNNHLFVTLMEQMEENNSDRIVNIIDKIFSEFQTKKFVP 349 Query: 343 SAGRKEVYELIIRITSKLHA--DXXXXXXXXXXXXXWESHQPDILFQFETIHDILSWXXX 400 SA + V + ++ + A WES+ F+ + + + Sbjct: 350 SAVKTSVNRCVHKVMQTVQAMEGDTGKIISAQAMTNWESYN----LTFDQLKQVFTKFVL 405 Query: 401 XXXXXXXXXYVKRQRQKRKLIDEIMRYVEEHLEQKITLKEVAAHFDFTPNYLGYLFKEEY 460 R+ + I ++ Y+E H + I+LK +A+ F P Y+G LFK+ + Sbjct: 406 EAAVIIQEL---RKENMKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTF 462 Query: 461 GLPFSEYVNERKTSRVSELLRDPTLKIYEIAERMGYKNIIYFNRQFKQITGMTPGEYRKK 520 G+ F EY+ + + + +LLR +++YE+AER+G+ + YF QF++I MTP EYR K Sbjct: 463 GVYFKEYLLKLRMNEAKKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNK 522 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,824,177,596 Number of extensions: 110473157 Number of successful extensions: 388791 Number of sequences better than 1.0e-05: 8546 Number of HSP's gapped: 399660 Number of HSP's successfully gapped: 9242 Length of query: 523 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 383 Effective length of database: 1,741,754,103 Effective search space: 667091821449 Effective search space used: 667091821449 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)