BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0013.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9G7.1 B3K9G7_9BACI Poly-gamma-glutamate synthesis protein (Ca... 483 e-134 B1DHC9.1 B1DHC9_9BACL Capsule biosynthesis protein CapA 359 2e-97 C0ZJN9.1 C0ZJN9_BREBN Putative uncharacterized protein 356 2e-96 Q39PU0.1 Q39PU0_GEOMG Capsule biosynthesis protein, putative 228 5e-58 B1DL23.1 B1DL23_9BACL Putative uncharacterized protein 219 2e-55 >B3K9G7.1 B3K9G7_9BACI Poly-gamma-glutamate synthesis protein (Capsule biosynthesis protein) Length = 346 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 230/346 (66%), Positives = 279/346 (80%), Gaps = 5/346 (1%) Query: 1 LRRFAVITLVLFLLIPGQAAFSQGASPQEK-----INLAFAGDILLDGFVGDQIAKYGVN 55 +++ + LV+ +LIP + G + Q K INL FAGDILLDG+VG+QI ++G Sbjct: 1 MKKLFCLILVIVMLIPASIVSAAGTTTQAKSKDKPINLVFAGDILLDGYVGNQIDRFGNL 60 Query: 56 FPFAKVAPALKKADIAFANLETPVSVRGEAAEKTFAFRSKPAALAGLNAAGIDGVTLANN 115 +PF KVAP LKKAD+AFANLETPVS+RG+AA+KTFAFRSKP L GL AGIDGVTLANN Sbjct: 61 YPFKKVAPILKKADMAFANLETPVSIRGKAADKTFAFRSKPETLQGLVYAGIDGVTLANN 120 Query: 116 HILDFGQDAMLDTLVHLDKYKIGHTGAGKNSNEAFRPYVQTVKNQKIAILGVSRVLSSPS 175 HILD+GQ AMLDT+ HL + KIG+TGAG+N +EAF+PYVQ + +K+A+LGVSRVLS S Sbjct: 121 HILDYGQQAMLDTITHLKRQKIGYTGAGRNIDEAFKPYVQNIDGKKVAVLGVSRVLSGNS 180 Query: 176 WYAGTNSPGAASAYTPEPMLGAIKKSAKENDYTIVYIHWNNEFKDYPEPYARNLAKQMID 235 W AG N PGAASAYT EPML IKKSAK NDYTIVY+HWN EF DYPE YAR +AK+MID Sbjct: 181 WIAGKNHPGAASAYTMEPMLTHIKKSAKTNDYTIVYVHWNQEFADYPEEYARTMAKKMID 240 Query: 236 SGADIIIGAHSHCLMGIEYYKHKPIYYSLGNFVFNRSTRGGDKTIHSMLVNFEISNNRVK 295 +GADIIIG+HSH LMGIEYYK+KPIYYSLGNFVFNRSTRGGDKT+ SM+V+ EI +++ Sbjct: 241 AGADIIIGSHSHTLMGIEYYKNKPIYYSLGNFVFNRSTRGGDKTLLSMMVHVEIQGSKIT 300 Query: 296 SRITPVKITGGQPNFMGEAYNKDTIKRMNQLSFNAVIAADGAVSEK 341 SRITPVKI GQPN M + YNK+ I ++N+LS+NA I A+G V++K Sbjct: 301 SRITPVKILQGQPNLMDKKYNKEIIAKLNKLSYNAKIDANGNVTKK 346 >B1DHC9.1 B1DHC9_9BACL Capsule biosynthesis protein CapA Length = 354 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 171/316 (54%), Positives = 221/316 (69%), Gaps = 1/316 (0%) Query: 26 SPQEKINLAFAGDILLDGFVGDQIAKYGVNFPFAKVAPALKKADIAFANLETPVSVRGEA 85 + + I ++FAGDILLDG V I KYGVN+PF KV L +DI+FANLETPVS RG+ Sbjct: 40 TEDKPIEISFAGDILLDGKVAANIEKYGVNYPFEKVRSLLSGSDISFANLETPVSTRGQK 99 Query: 86 AEKTFAFRSKPAALAGLNAAGIDGVTLANNHILDFGQDAMLDTLVHLDKYKIGHTGAGKN 145 A KT+ FRS P L + +GIDGV++ANNH LD+G DA+ DT+ +LD+YKIGHTGAG N Sbjct: 100 AIKTYTFRSAPKTLQAIVNSGIDGVSVANNHTLDYGVDALTDTIDYLDEYKIGHTGAGSN 159 Query: 146 SNEAFRPYVQTVKNQKIAILGVSRVLSSPSWYAGTNSPGAASAYTPEPMLGAIKKSAKEN 205 +EAF Y + V +K+AI+G+SRVLS PSWYAG N G AS Y + M+ +K + K + Sbjct: 160 IDEAFTAYSKKVNGKKVAIVGISRVLSGPSWYAGNNKAGIASGYDFDTMMRYVKNAVKYS 219 Query: 206 DYTIVYIHWNNEFKDYPEPYARNLAKQMIDSGADIIIGAHSHCLMGIEYYKHKPIYYSLG 265 D T++YIHWNNE++DYPE YAR AK ID+G D +IG+HSHCL GIE YK KPI+YSLG Sbjct: 220 DITVIYIHWNNEYQDYPEDYARTYAKAFIDAGVDAVIGSHSHCLQGIETYKGKPIFYSLG 279 Query: 266 NFVFNRSTRGGDKTIHSMLVNFEISNNRVKSRITPVKITGGQPNFMGEAYNKDTIKRMNQ 325 NFVF + R +K SM+ ++V S+ITPVKI +P EAYN+ T ++N+ Sbjct: 280 NFVFTPTQR-SNKAYDSMIATLTFDGDKVSSKITPVKIDNTRPILREEAYNETTYSKLNK 338 Query: 326 LSFNAVIAADGAVSEK 341 +SFN + DG VS K Sbjct: 339 ISFNVKVNKDGTVSAK 354 >C0ZJN9.1 C0ZJN9_BREBN Putative uncharacterized protein Length = 318 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 165/313 (52%), Positives = 221/313 (70%), Gaps = 2/313 (0%) Query: 28 QEKINLAFAGDILLDGFVGDQIAKYGVNFPFAKVAPALKKADIAFANLETPVSVRGEAAE 87 Q+ I +AF GD++LD VG+QI +YGV++PF K A LK+AD+ NLETPVS RG + Sbjct: 4 QDSIQVAFVGDMILDKSVGNQIGRYGVDYPFQKTADFLKQADLTIGNLETPVSTRGRPEK 63 Query: 88 KTFAFRSKPAALAGLNAAGIDGVTLANNHILDFGQDAMLDTLVHLDKYKIGHTGAGKNSN 147 K + +R+KP +L GL AG D V LANNH LD+G DA+ DT+ HL K KIG+ GAGKN Sbjct: 64 KEYTYRAKPESLKGLVNAGFDVVNLANNHSLDYGMDALTDTMEHLKKAKIGYVGAGKNEE 123 Query: 148 EAFRPYVQTVKNQKIAILGVSRVLSSPSWYAGTNSPGAASAYTPEPMLGAIKKSAKENDY 207 EAF PY+QT+K +++AI+G+SRVL + WYA N PG A AY+ EPML +KK+ E+D Sbjct: 124 EAFAPYIQTIKGKRVAIIGISRVLPNERWYARKNKPGLAHAYSYEPMLSYVKKAVAESDI 183 Query: 208 TIVYIHWNNEFKDYPEPYARNLAKQMIDSGADIIIGAHSHCLMGIEYYKHKPIYYSLGNF 267 TI +HWN E+KDYPEPYAR +AK++IDSG D I+G+HSH +MG+E+YK PIYYS+GNF Sbjct: 184 TIAVMHWNQEYKDYPEPYAREMAKKLIDSGVDAIVGSHSHSIMGVEFYKKAPIYYSVGNF 243 Query: 268 VFNRSTRGGDKTIHSMLVNFEISNNRVKSRITPVKITGGQPNFMGEAYNKDTIKRMNQLS 327 VF +T K +M+V S + KSR+ PVK+T GQP M E + I ++N++S Sbjct: 244 VF--TTSRNPKGREAMMVQLTFSKDGSKSRVIPVKLTNGQPAPMDEKNKQRIIDKLNRIS 301 Query: 328 FNAVIAADGAVSE 340 + A I+ G V+E Sbjct: 302 YGASISEKGEVTE 314 >Q39PU0.1 Q39PU0_GEOMG Capsule biosynthesis protein, putative Length = 349 Score = 228 bits (582), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 188/339 (55%), Gaps = 22/339 (6%) Query: 3 RFAVITLVLFLLIPGQAAFSQGASPQEKINLAFAGDILLDGFVGDQIAKYGVNFPFAKVA 62 R + +V L +P A + I + GDI+L G +++ G ++PFAK A Sbjct: 5 RLMLAAIVTLLAVPALGA--------DGIVITCVGDIMLAGSATPTLSRSGYDYPFAKTA 56 Query: 63 PALKKADIAFANLETPVSVRG-EAAEKTFAFRSKPAALAGLNAAGIDGVTLANNHILDFG 121 L++ DIA NLE P++ RG E +KT+ FR+ P A A L AG +TLANNH++D+G Sbjct: 57 QELRRGDIAMGNLEAPLTERGTEYRDKTYRFRTNPIAAAALKRAGFSVLTLANNHMMDYG 116 Query: 122 QDAMLDTLVHLDKYKIGHTGAGKNSNEAFRPYVQTVKNQKIAILGVSRVLSSPS-WYAGT 180 + + DTL L ++ I HTGAG + EA R V +V+ ++IA L S L+ PS +YAG Sbjct: 117 NEGLQDTLATLSRHGIAHTGAGASLAEARREAVVSVRGKRIAFLAYS--LTFPSEFYAGP 174 Query: 181 NSPGAASAYTPEPMLGAIKKSAKENDYTIVYIHWNNEFKDYPEPYARNLAKQMIDSGADI 240 N PG A Y P + I+++ E DY +V HW E ++P+ Y A+ ID+GAD Sbjct: 175 NRPGTAPGYAPH-VREDIRRAKAEADYVVVSFHWGAERAEFPKQYQTETARLAIDAGADA 233 Query: 241 IIGAHSHCLMGIEYYKHKPIYYSLGNFVFNRSTRGGDKTIHSMLVNFEISNNRVKSRITP 300 IIG H H L GIE+Y+ KPI YSLGNF F + D+ S++ +S+ + P Sbjct: 234 IIGHHPHVLQGIEFYRGKPILYSLGNFAFGSRSTAADR---SVMARLTLSDEETSVELVP 290 Query: 301 VKI----TGGQPNFMGEAYNKDTIKRMNQLS--FNAVIA 333 + + T QP + + I+R+N+LS F VI+ Sbjct: 291 LNVLHRETRYQPGILAGRKGAEVIERLNRLSQPFGTVIS 329 >B1DL23.1 B1DL23_9BACL Putative uncharacterized protein Length = 450 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 4/315 (1%) Query: 29 EKINLAFAGDILLDGFVGDQIAKYGVNFPFAKVAPALKKADIAFANLETPVSVRGEAAE- 87 + ++LAF GDILL VGD + +YG ++P+ + L + D+ ANLE PV+ RG AE Sbjct: 138 DTVSLAFVGDILLAESVGDMMKQYGDDYPYKEALFHLSEPDLTAANLEYPVTNRGVPAED 197 Query: 88 KTFAFRSKPAALAGLNAAGIDGVTLANNHILDFGQDAMLDTLVHLDKYKIGHTGAGKNSN 147 K F F+ AL L +GID VTLANNH LD G + +LDT+ HL+K I H GAGKN Sbjct: 198 KQFVFKGDAGALPALKDSGIDIVTLANNHTLDQGIEGLLDTMTHLNKAGINHVGAGKNDT 257 Query: 148 EAFRPYVQTVKNQKIAILGVSRVLSSPSWYAGTNSPGAASAYTPEPMLGAIKKSAKENDY 207 EAF P ++ K+A +GVSRV+ + W A N G A Y AIKK+ ++ D Sbjct: 258 EAFAPVIKEANGIKVAYIGVSRVVPTGDWKADKNRAGVAETYDTTRTKAAIKKAKEKADL 317 Query: 208 TIVYIHWNNEFKDYPEPYARNLAKQMIDSGADIIIGAHSHCLMGIEYYKHKPIYYSLGNF 267 +V +HW E + PE Y R+ A++ IDSGAD+++G+H H L G E YK K I YSLGNF Sbjct: 318 VVVMVHWGIEKAETPEQYQRDFAREYIDSGADLVVGSHPHVLQGFEQYKGKWIAYSLGNF 377 Query: 268 VFNRSTRGGDKTIHSMLVNFEISNN-RVKSRITPVKITGGQPNFMGEAYNKDTIKRMNQL 326 +F+ +G T + ++N S + + P+ QP + K + + L Sbjct: 378 IFSAYPKGA--TADTGVLNAVCSKSGDCDLKFDPMNNNLAQPKPVDGDKAKTLLDHLTAL 435 Query: 327 SFNAVIAADGAVSEK 341 SF + +DG ++ K Sbjct: 436 SFGVKVRSDGTIAAK 450 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,056,876,024 Number of extensions: 88902912 Number of successful extensions: 257402 Number of sequences better than 1.0e-05: 626 Number of HSP's gapped: 256437 Number of HSP's successfully gapped: 631 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)