BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0007.p (397 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z585.1 C0Z585_BREBN Putative spore germination protein 270 1e-70 B1DF38.1 B1DF38_9BACL Germination protein, Ger(X)C family 261 6e-68 B3K5R3.1 B3K5R3_9BACI Germination protein, Ger(X)C family 248 9e-64 C0Z4B2.1 C0Z4B2_BREBN Spore germination protein 246 3e-63 A3IC07.1 A3IC07_9BACI Spore germination protein KC 230 2e-58 >C0Z585.1 C0Z585_BREBN Putative spore germination protein Length = 393 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 231/381 (60%), Gaps = 9/381 (2%) Query: 13 SGCWERRELNEMGFILGMGLDKAESGYRVTMQVVIPSAISSQXXXXXXXXXXXXXXSDFT 72 +GCW+R+ELN++ +G+G+DK ++GY+V++QVV P+ +++ FT Sbjct: 17 AGCWDRKELNDLAIAVGIGIDKVQTGYQVSVQVVDPAEVAANKGKPGRAPVTL-----FT 71 Query: 73 V--PTIYEADRQYSLLSSRSGYKGHIRVLVIGEELARAGIAETLDVLIRSREPRNDYYVM 130 + PTI+EA R+ + +S R Y H R+L+ GEE+AR GIA +D + R E R D+Y+ Sbjct: 72 MNAPTIFEAVRKMTTISPRKIYMAHTRMLIFGEEVAREGIAPVIDFVSRDHEFRTDFYIA 131 Query: 131 VAKDTTAKEVLKILTPMDKLPANKLFNAMDKSHKESARTVAVPLIKFIENLIYEGINPVL 190 +A+ TTA+ +L+++TP++++P+ ++F +++ S K A T AV + + I + +G VL Sbjct: 132 IARGTTARNILRVITPLEQIPSTEMFASLETSSKVWAPTAAVTMDQLITDFTSKGKEAVL 191 Query: 191 TGVEITGNAKEGDKKSNLEESTPRASLRYRSVAVFKKDKMIGWLSDGEVIGFNYISNNIV 250 TGV +TG A+EGDK++N+E+ L+Y ++A F+ DKMI WLS+ + ++YI+ + Sbjct: 192 TGVRLTGPAREGDKRNNVEQIDTPVLLQYTTLATFRGDKMINWLSEADSKAYSYITGKVK 251 Query: 251 HSSGPIIGDDGRPIVIEALHSSTKRKVKIINGEPHIYIHVKAECNVEEVESRDNLESEKV 310 + G + G + +E +H+ K + + NG P + +H+ E ++ EV+ + +L E Sbjct: 252 STVGSMPCKGGGLLTLEVMHADAKIEATMKNGTPEVIVHIALENDIGEVQCKLDLTEEDT 311 Query: 311 ITELEKKSEERIVYLMKSAAEQINEKYNVDIMGFGQMIYRAKPQAWAKLQQRKGEDYLKS 370 I ELEK++E+ + L A +K VDI GFG+ I+R P+ W K+ + + K Sbjct: 312 IKELEKEAEKSLEALATKAIAN-AKKNGVDIYGFGEAIHRQYPKVWKKIGSNWEKGFSK- 369 Query: 371 LPVHYSASVSITRIGVTDKSF 391 LPVH A V I R+G + +F Sbjct: 370 LPVHVKADVKIRRLGTINNAF 390 >B1DF38.1 B1DF38_9BACL Germination protein, Ger(X)C family Length = 400 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 231/384 (60%), Gaps = 5/384 (1%) Query: 13 SGCWERRELNEMGFILGMGLDK-AESGYRVTMQVVIPSAISSQXXXXXXXXXXXXXXSDF 71 +GCW RRELN++ + +G+DK E+ Y+V++QVV P +++ Sbjct: 20 AGCWNRRELNDLAIAVAIGIDKDGENQYQVSVQVVDPGEVAANNRTMTRTPVTFYQARG- 78 Query: 72 TVPTIYEADRQYSLLSSRSGYKGHIRVLVIGEELARAGIAETLDVLIRSREPRNDYYVMV 131 TI+EA R+ + +S R Y H+R+LVIGEELA+ GI + L+ + R E R D+Y+ + Sbjct: 79 --RTIFEAIRKMTTVSPRPIYSAHLRMLVIGEELAKEGIGDALEYMSRYYEHRTDFYIAI 136 Query: 132 AKDTTAKEVLKILTPMDKLPANKLFNAMDKSHKESARTVAVPLIKFIENLIYEGINPVLT 191 A++TTA LKILT ++ +PAN++++++ S K+ A T ++ L + I +++ +G PV+T Sbjct: 137 ARETTAASTLKILTHLEAIPANQMYSSLLNSQKQWAPTASITLDQLIMDIVSKGKQPVVT 196 Query: 192 GVEITGNAKEGDKKSNLEESTPRASLRYRSVAVFKKDKMIGWLSDGEVIGFNYISNNIVH 251 G+ + G+ ++G + N+E A L+Y +AV +DK+IGWL++ E G+++I N++ + Sbjct: 197 GLRLRGDQEKGMSRENVESIASAAHLQYSGLAVINQDKLIGWLNEVESRGYSFIHNDVHN 256 Query: 252 SSGPIIGDDGRPIVIEALHSSTKRKVKIINGEPHIYIHVKAECNVEEVESRDNLESEKVI 311 + G + DG + IE + S T K K +NGEP I++ ++ E ++ EV + +L + I Sbjct: 257 TVGVLKCPDGGKMTIEVIRSKTIPKAKFVNGEPEIHLAIRIEASIGEVLCKIDLTQKSSI 316 Query: 312 TELEKKSEERIVYLMKSAAEQINEKYNVDIMGFGQMIYRAKPQAWAKLQQRKGEDYLKSL 371 ++E KSE+ I ++ +Q EKY VDI GFG +++RA P W K++ + + + Sbjct: 317 YKMEHKSEDAIRGFVQKTIDQAQEKYKVDIFGFGDVVHRANPAYWKKVEN-NWDSVFQKM 375 Query: 372 PVHYSASVSITRIGVTDKSFVDDI 395 PV V+I + G + SF+ ++ Sbjct: 376 PVKLDVVVNIRQTGTVNNSFMQEM 399 >B3K5R3.1 B3K5R3_9BACI Germination protein, Ger(X)C family Length = 401 Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 223/386 (57%), Gaps = 4/386 (1%) Query: 13 SGCWERRELNEMGFILGMGLDKAESGYRVTMQVVIPSAISSQXXXXXXXXXXXXXXSDFT 72 SGCW RRELNE+ + G+D + YR+++QV IP ++++ Sbjct: 19 SGCWNRRELNELAIAVAAGVDWVDGRYRLSIQVAIPGQVTAKRSGGPQAPATLYTAEG-- 76 Query: 73 VPTIYEADRQYSLLSSRSGYKGHIRVLVIGEELARAGIAETLDVLIRSREPRNDYYVMVA 132 TI+EA R+ + +S R Y H+R+ ++ E +AR GIA+ LD+L R E R D+Y+ + Sbjct: 77 -DTIFEAARRMTQISPRKIYFSHLRMFLMDEAMAREGIAKVLDLLSRDHEFRPDFYLAIT 135 Query: 133 KDTTAKEVLKILTPMDKLPANKLFNAMDKSHKESARTVAVPLIKFIENLIYEGINPVLTG 192 K T +E LKI+TPM+ +PANKL++++ S K + ++AV L + I ++ G +PVLTG Sbjct: 136 KGATVEETLKIMTPMETIPANKLYDSLQISEKVWSPSMAVTLDELINDITSIGKHPVLTG 195 Query: 193 VEITGNAKEGDKKSNLEESTPRASLRYRSVAVFKKDKMIGWLSDGEVIGFNYISNNIVHS 252 + ITGN + G K N+E + L+Y AVFK DK+IGWL++ + G+ +I ++ S Sbjct: 196 LVITGNREIGKTKKNVENIQTPSQLKYSGFAVFKNDKLIGWLNEKDSRGYRFIMGDVKSS 255 Query: 253 SGPIIGDDGRPIVIEALHSSTKRKVKIINGEPHIYIHVKAECNVEEVE-SRDNLESEKVI 311 G I + +V+E L + K K +I+ P + I + E N+ VE S +L + + Sbjct: 256 VGFIPCHNDGKVVVETLRTDAKLKGRIVQSRPEMSIKLNIEGNIGSVECSGLDLSQPETV 315 Query: 312 TELEKKSEERIVYLMKSAAEQINEKYNVDIMGFGQMIYRAKPQAWAKLQQRKGEDYLKSL 371 ELE++ EER+ ++S +++ + VDI GFG+ +R+ P+ W ++Q + Y +L Sbjct: 316 RELEEEMEERLTRFLESVIDKVQTELKVDIFGFGETFHRSHPKQWKEMQDAWNDRYFPNL 375 Query: 372 PVHYSASVSITRIGVTDKSFVDDIKE 397 H + I R G T+ SF++DIKE Sbjct: 376 KTHVNVDYKIRRTGTTNNSFLNDIKE 401 >C0Z4B2.1 C0Z4B2_BREBN Spore germination protein Length = 400 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 214/387 (55%), Gaps = 9/387 (2%) Query: 14 GCWERRELNEMGFILGMGLDKAESGYRVTMQVVIPSAISSQXXXXXXXXXXXXXXSDFTV 73 GCW RRELN++ ++G G+DK + Y ++ Q+V P ++S+ Sbjct: 19 GCWNRRELNDLAIVMGTGIDKIDGEYVISTQIVNPGGVASKEGGGMNQSSVATYS--MRA 76 Query: 74 PTIYEADRQYSLLSSRSGYKGHIRVLVIGEELARAGIAETLDVLIRSREPRNDYYVMVAK 133 +I+E R+ + ++ R Y HI+VLV+GE++A+ G E LD+L R E R D+YV++AK Sbjct: 77 SSIFEGIRKMTTVTPRRLYFSHIQVLVLGEQIAKEGAKEVLDLLFRDHEVRPDFYVILAK 136 Query: 134 DTTAKEVLKILTPMDKLPANKLFNAMDKSHKESARTVAVPLIKFIENLIYEGINPVLTGV 193 D TA ++L ++ P++K+PA KL+ +++ + V++ L +FI +L+ +GI PVL GV Sbjct: 137 DATALQILSMIDPLEKIPATKLYKSLETAESAWGSIVSIQLDEFIADLLRDGIEPVLVGV 196 Query: 194 EITGNAKEGDKKSNLEESTPRASLRYRSVAVFKKDKMIGWLSDGEVIGFNYISNNIVHSS 253 G G N ++ + + LRY + VFK DK+ GW ++ E IGF+YI++ + + Sbjct: 197 NSKGKVHMGTSGGNSQKESQSSLLRYHEIGVFKGDKLRGWFNEEESIGFSYITDRVDSTV 256 Query: 254 GPIIGDDGRPIVIEALHSSTKRKVKIINGEPHIYIHVKAECNVEEVESRDNLESEKVITE 313 I D IVIE + S T K+ G+P + + + AE NV EV ++L K I + Sbjct: 257 EEIPCDKNNKIVIEIIRSKTTVNGKVEKGKPQVEVSIFAEGNVGEVACSNDLSDPKTIYK 316 Query: 314 LEKKSEERIVYLMKSAAEQINEKYNVDIMGFGQMIYRAKPQAWAKLQQRKGEDYLKSLP- 372 LE E++I + SA + ++Y D+ GFGQ IY+ P+ W K++ ED+ P Sbjct: 317 LEADVEKQIRGKIVSAIHKAQKQYRSDVFGFGQSIYKNDPKGWEKVK----EDWDSQFPN 372 Query: 373 --VHYSASVSITRIGVTDKSFVDDIKE 397 V V + R G SF+ +K+ Sbjct: 373 LKVKIKTDVKLRRTGKVGNSFIPFMKK 399 >A3IC07.1 A3IC07_9BACI Spore germination protein KC Length = 399 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 215/385 (55%), Gaps = 4/385 (1%) Query: 13 SGCWERRELNEMGFILGMGLDKAESGYRVTMQVVIPSAISSQXXXXXXXXXXXXXXSDFT 72 SGCW +RELNE+ ++ +G+DK + Y +T+Q+V PS +S + Sbjct: 18 SGCWSKRELNELAIVVALGIDKVDDEYEITVQIVDPSEVSMRQASTQRSPVISYHSRG-- 75 Query: 73 VPTIYEADRQYSLLSSRSGYKGHIRVLVIGEELARAGIAETLDVLIRSREPRNDYYVMVA 132 TI+EA R+ + +++R Y H++V+V+GE+LA+ GI+++LD++ R E R D+ V+++ Sbjct: 76 -ETIFEAIRKMATIAARKPYFAHLQVVVLGEDLAKDGISDSLDLIARDHEFRKDFEVIMS 134 Query: 133 KDTTAKEVLKILTPMDKLPANKLFNAMDKSHKESARTVAVPLIKFIENLIYEGINPVLTG 192 + TAKEVL +LTP++K+PANK+ N++ S K T+A+ + + L + +++ Sbjct: 135 YEATAKEVLNVLTPIEKVPANKILNSLKVSEKVWGSTIAINIDDLVTRLSEKDSGALISA 194 Query: 193 VEITGNAKEGDKKSNLEESTPRASLRYRSVAVFKKDKMIGWLSDGEVIGFNYISNNIVHS 252 +EI G+ + G ++N++ L+Y +AVFK D+ IG LS+GE +++S+ I + Sbjct: 195 IEIHGDKRLGADRTNVQRVKTPVFLKYAGLAVFKGDQYIGLLSEGESRSISFLSDKIQST 254 Query: 253 SGPIIGDDGRPIVIEALHSSTKRKVKIINGEPHIYIHVKAECNVEEVESRDNLESEKVIT 312 + + E SSTK K NG+P I + + E NV EVE NL K + Sbjct: 255 IEIVTCPKQGTLSTEITKSSTKVKGSFKNGKPQIDVQINVEQNVGEVECDINLTKNKTVD 314 Query: 313 ELEKKSEERIVYLMKSAAEQINEKYNVDIMGFGQMIYRAKPQAWAKLQQRKGEDYLKSLP 372 + KK+ + I ++ A E+I ++Y VD++G+G ++RA + W K++ LP Sbjct: 315 YINKKTAQGIDERIEKALEKIQQQYQVDVLGYGDALHRADAKQWKKIKN-DWPSIFPDLP 373 Query: 373 VHYSASVSITRIGVTDKSFVDDIKE 397 +H V+ +G S + KE Sbjct: 374 IHVHVKVTTQGLGTMQNSLLKKPKE 398 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,109,820,938 Number of extensions: 82471335 Number of successful extensions: 190346 Number of sequences better than 1.0e-05: 405 Number of HSP's gapped: 189951 Number of HSP's successfully gapped: 405 Length of query: 397 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 259 Effective length of database: 1,760,596,133 Effective search space: 455994398447 Effective search space used: 455994398447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)