BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0341.0004.p (271 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5U2.1 B3K5U2_9BACI Putative uncharacterized protein 241 5e-62 C0ZEQ2.1 C0ZEQ2_BREBN Putative uncharacterized protein 195 4e-48 B1D9S7.1 B1D9S7_9BACL Serine/threonine protein kinase 193 2e-47 B4BJU4.1 B4BJU4_9BACI Serine/threonine protein kinase 180 1e-43 C2W7U2.1 C2W7U2_BACCE Putative uncharacterized protein 179 3e-43 >B3K5U2.1 B3K5U2_9BACI Putative uncharacterized protein Length = 283 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 126/270 (46%), Positives = 169/270 (62%), Gaps = 14/270 (5%) Query: 8 GFVRAWRDYPLPEGTGIGERYKIESLLGQGSYGLTYRCWDNKGGAFVAVKQSRPSKKAVG 67 F+ AWRDYP E T +G RY ++ ++G+GSYG+ Y+C D + G VAVKQSRPSK Sbjct: 9 SFINAWRDYPAEENTVLGSRYTVQEMIGEGSYGIIYQCRDQQSGHIVAVKQSRPSKGDYA 68 Query: 68 RVLLGKESDVLRSMDHPNIPKCRDYFEYKGSNWLVTDYIEGKTLEDLIFDEHIVYGEREC 127 + LL +E+ +L S+ HP IP RD+F ++LV Y++G TLEDLIF+ + YGE EC Sbjct: 69 KELLNREAAILSSLQHPQIPAYRDFFTDSRHSYLVMSYMDGDTLEDLIFEHGMKYGEAEC 128 Query: 128 LAATLKLMELVAHVHARGYVHLDLRIPNVILKGEEMYLIDFGLARRIGEKETVCDERKPA 187 L L+L+ELV ++H +GYVHLDLRIPNV+ K ++LIDFGLARRIGE + R+PA Sbjct: 129 LHIALQLLELVRYLHEQGYVHLDLRIPNVLFKDGRIHLIDFGLARRIGEPPPL---RQPA 185 Query: 188 --------TGELPKQMPPVIASDLYDIGQFMLFMLYSGYQPEPGEA---ERNWREELDLS 236 T + DL DIG FMLFMLYS Y P+ + ER+W+EEL LS Sbjct: 186 RKKFRRGGTSSSVQYKESKEIEDLRDIGHFMLFMLYSAYDPDDDPSAIGERSWQEELQLS 245 Query: 237 PGMLHLLSRLLGERESYSDTTLFVREAEVL 266 + ++ RLL YS + F+ E + L Sbjct: 246 EELREMIKRLLQLSSPYSGSLQFMNELQTL 275 >C0ZEQ2.1 C0ZEQ2_BREBN Putative uncharacterized protein Length = 280 Score = 195 bits (495), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 105/265 (39%), Positives = 156/265 (58%), Gaps = 11/265 (4%) Query: 5 WWRGFVRAWRDYPLPEGTGIGERYKIESLLGQGSYGLTYRCWDNKGGAFVAVKQSRPSKK 64 WW +R D P G G Y+I +LG GSYG+ Y N G V +KQ +PS + Sbjct: 8 WWNEIIR---DKPYRPGHLAGH-YEITKVLGMGSYGIAYLATHNPTGNQVVLKQVKPSLR 63 Query: 65 AV--GRVLLGKESDVLRSMDHPNIPKCRDYFEYKGSNWLVTDYIEGKTLEDLIFDEHIVY 122 G + E VL S+ HP P+C D F Y+ +++V Y+ G TLED++FD++IV Sbjct: 64 HTPKGEAMQAYEKKVLMSLSHPQFPRCLDSFTYRQDSFIVMTYLAGPTLEDMLFDQNIVA 123 Query: 123 GERECLAATLKLMELVAHVHARGYVHLDLRIPNVILKGEEMYLIDFGLARRIGEKETVCD 182 E++C ++ ELVA++H + +H D+RIPNVI KG++ YLIDFGLAR +G++ T Sbjct: 124 DEQKCAQWIRQIGELVAYLHMQNVIHRDVRIPNVIWKGDKPYLIDFGLARFVGDRPTYTA 183 Query: 183 ER---KPATGELPKQMPPVIASDLYDIGQFMLFMLYSGYQPEPGEAERNWREELDLSPGM 239 + P+ +L +++ P +SDLY +G F LF+LYSGY+ EP E++W EEL LSP + Sbjct: 184 DTLSAYPSEKQLKREVAP--SSDLYALGHFFLFLLYSGYESEPDAPEKSWEEELSLSPPI 241 Query: 240 LHLLSRLLGERESYSDTTLFVREAE 264 ++ RLL Y ++ E + Sbjct: 242 RTMIRRLLQMDAPYESVQDWLEELD 266 >B1D9S7.1 B1D9S7_9BACL Serine/threonine protein kinase Length = 306 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/254 (40%), Positives = 147/254 (57%), Gaps = 8/254 (3%) Query: 5 WWRGFVRAWRDYPLPEGTGIGERYKIESLLGQGSYGLTYRCWDNKGGAFVAVKQSRPSKK 64 WW+ ++ W DYPL +G G Y+IE LG GSYG YRC D + G V +K+++PSK+ Sbjct: 29 WWKQWINNWIDYPLGQGIVWGRTYRIEEFLGMGSYGQAYRCTDLRSGETVLLKRAKPSKR 88 Query: 65 AVGRVLLGKESDVLRSMDHPNIPKCRDYFEYKGSNWLVTDYIEGKTLEDLIFDEHIVYGE 124 GR LL +E+D+L+ ++HP +PK D+ ++ LV Y+EG T E E + + Sbjct: 89 DTGRRLLRREADILQQLNHPQMPKRLDWVVHRREEALVMTYVEGVTAEQAALLEERTFTQ 148 Query: 125 RECLAATLKLMELVAHVHARGYVHLDLRIPNVILKGEEMYLIDFGLARRIGEKETVCDER 184 E L L+ + H+H GYVH D+RIPNV++ + +YLID GLA RIGEK E Sbjct: 149 LEALRIVEALLSPLKHMHEAGYVHRDVRIPNVVMNSKGIYLIDLGLACRIGEKNPDGREE 208 Query: 185 K-------PATGELPKQM-PPVIASDLYDIGQFMLFMLYSGYQPEPGEAERNWREELDLS 236 + G + +M P SDLY +G LF++Y+GY P+ GE ER+W EEL L+ Sbjct: 209 SVMPSGFADSWGAVKFRMRQPDRNSDLYGLGHLFLFLMYAGYTPQEGEKERSWEEELTLA 268 Query: 237 PGMLHLLSRLLGER 250 P + + LL R Sbjct: 269 PEIRGFVRGLLDSR 282 >B4BJU4.1 B4BJU4_9BACI Serine/threonine protein kinase Length = 275 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 141/239 (58%), Gaps = 4/239 (1%) Query: 9 FVRAWRDYPLPEGTGIGERYKIESLLGQGSYGLTYRCWDNKGGAFVAVKQSRPSKKAVGR 68 F+ W D P G + RY+I LG GSYG+ Y+ D G V +KQ+R +K GR Sbjct: 10 FIARWIDRPHRSGKVLFGRYEIIEELGMGSYGIAYKGRDRDTGRLVVIKQARRTKGEDGR 69 Query: 69 VLLGKESDVLRSMDHPNIPKCRDYFEYKGSNWLVTDYIEGKTLEDLIFDEHIVYGERECL 128 LL +E+DVL + HP IP D F G LV DYI+G+T+ED IF I Y E+ Sbjct: 70 RLLQREADVLSRLRHPQIPARYDTFIEGGQPHLVMDYIDGQTVEDQIFGLGITYTEQAAF 129 Query: 129 AATLKLMELVAHVHARGYVHLDLRIPNVILKGEEMYLIDFGLARRIGEKETVCDERKPAT 188 L ++++V ++HA G VH DLRIPN+I + + +IDFGLA R+GE+ + D+ P Sbjct: 130 RLLLDVLDVVRYIHASGIVHRDLRIPNIIWRHGTVAIIDFGLACRMGERVDLRDD-DPLE 188 Query: 189 GELPKQMPPVIASDLYDIGQFMLFMLYSGYQPEPGEAERNWREELDLSPGMLHLLSRLL 247 L ++ P SD Y +G F LF+LYS Y+P E E++W EELDLSP +L ++L Sbjct: 189 KRLRREPHP--RSDFYALGHFTLFLLYSAYEP-TSEDEKSWEEELDLSPKARAMLRKML 244 >C2W7U2.1 C2W7U2_BACCE Putative uncharacterized protein Length = 273 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 106/260 (40%), Positives = 146/260 (56%), Gaps = 9/260 (3%) Query: 6 WRGFVRAWRDYPLPEGTGIGERYKIESLLGQGSYGLTYRCWDNKGGAFVAVKQSRPSKK- 64 WR V AW D PL T + +RYKIES++G GSYG TY +D K +KQ R SK+ Sbjct: 3 WRN-VLAWFDKPLRNDTIVTQRYKIESVIGMGSYGFTYIVYDLKTKEKKVLKQLRQSKQR 61 Query: 65 -AVGRVLLGKESDVLRSMDHPNIPKCRDYFEYKGSNWLVTDYIEGKTLEDLIFDEHIVYG 123 GR +E +L+ +DHP IP D F +K + V +Y+ GK ED IF + VY Sbjct: 62 YMSGRKSFAQEQVILKQLDHPAIPMLYDSFIWKKQPFFVMEYMPGKNFEDFIFKDGHVYE 121 Query: 124 ERECLAATLKLMELVAHVHARGYVHLDLRIPNVILKGEEMYLIDFGLARRIGEKETVCDE 183 E E K++ELV++ H++G VH DLR PN+++K ++ +IDFGLAR IGE DE Sbjct: 122 EGEVFQILYKVLELVSYFHSKGIVHRDLRTPNILMKDGQISIIDFGLARFIGE----IDE 177 Query: 184 RKPA-TGELPKQMPPVIASDLYDIGQFMLFMLYSGYQPEPGEAERNWREELDLSPGMLHL 242 R GE SD Y +G F+LF+LYSGY+ E ER W EEL L+ + Sbjct: 178 RASTYEGEQACMREVHYRSDFYALGHFVLFLLYSGYESTVQE-ERPWHEELQLAKENRDI 236 Query: 243 LSRLLGERESYSDTTLFVRE 262 + R+L + Y + +R+ Sbjct: 237 IMRMLRMKTPYYEGVQDIRK 256 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,765,487,803 Number of extensions: 77720782 Number of successful extensions: 229782 Number of sequences better than 1.0e-05: 7841 Number of HSP's gapped: 232788 Number of HSP's successfully gapped: 7901 Length of query: 271 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 138 Effective length of database: 1,807,701,208 Effective search space: 249462766704 Effective search space used: 249462766704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)