BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0050.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97TG6.1 Q97TG6_CLOAB Oxidoreductase 254 8e-66 Q68RS6.1 Q68RS6_PRODI Putative uncharacterized protein 205 5e-51 C0T2L9.1 C0T2L9_9PSEU Predicted dehydrogenase 155 7e-36 A4IPC2.1 A4IPC2_GEOTN Oxidoreductase 142 5e-32 Q9K689.1 Q9K689_BACHD Oxidoreductase 127 2e-27 >Q97TG6.1 Q97TG6_CLOAB Oxidoreductase Length = 334 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 130/326 (39%), Positives = 186/326 (57%), Gaps = 6/326 (1%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 +GI+G S I A++ PA+ ++ + I IA+R KA + A+ Y+I V Sbjct: 8 NMGIIGCSTILPRAIIGPAKAIDNLCIYGIASRKRSKADEYAKKYKIDRVFDSYEDLLNC 67 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 VYIAL N+LH EW ++A+NA KHVL EKP+ L ++E + + EK + K+ EG Sbjct: 68 EDIHCVYIALPNDLHIEWVLKAINANKHVLVEKPMCLKSDEFDLILKEYEKK-NIKILEG 126 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 L I HPWQ A+K +V S ++G+L ++T I + K+ + NYR +GGGAF DLGCY Sbjct: 127 LAIQHHPWQLAIKDMVSSAEYGKLQEVKTDICIILKNSNENNYRRFPERGGGAFYDLGCY 186 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCDWTFQAVLKYADGLEAECLTSFEQPFRASHTL 250 WLQFLQ I +P S FDGP CDWTF A +Y GL++ + SFE P++ H L Sbjct: 187 WLQFLQFITGAKPESYKGSSKFDGPNNCDWTFNANAEYKSGLKSSFIASFELPYKVEHIL 246 Query: 251 YFDHTVLTIPDFFRPVKGFYKIKIRHDLPDNHST-LCEFEPMNYYVSQLEAFAEIMSGQR 309 F+ + + DFFR G YKIK ++ ++ S F+P NYYV+QL F E ++G + Sbjct: 247 KFEKATVKVHDFFRACLGNYKIKFSIEVKEDGSIKKYSFDPQNYYVNQLRFFMEAINGSK 306 Query: 310 AE----KLEAVWERVQMHSLIMAEAR 331 + L +ERV + I AR Sbjct: 307 EDIYNMYLRQSYERVNIMEEIYEHAR 332 >Q68RS6.1 Q68RS6_PRODI Putative uncharacterized protein Length = 332 Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 179/329 (54%), Gaps = 5/329 (1%) Query: 12 LGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXXX 71 +GILGA+NIA A+LEPA+ ++TV + +A+R +A K AE YQI V Sbjct: 7 IGILGAANIAKRAILEPAQKLKTVQVLGLASRDKIRAEKFAEDYQIETVFPSYDALIESD 66 Query: 72 XXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEGL 131 D VYI L+N LH W ++ A K +L EKPI L EE + + + E+ P L E + Sbjct: 67 AIDAVYIPLANHLHAAWVIKTAQAKKPILVEKPICLTLEEFDAIEQSVEEHRVPIL-EAV 125 Query: 132 MIAFHPWQQALKSIVDSGQFGQLHRIRTRITVP-AKDRHAGNYRSVKAKGGGAFADLGCY 190 M+ HPWQQ L+ ++ + +G++ I TR+ VP ++++ GNYR +GGGAF DLG Y Sbjct: 126 MVQHHPWQQKLQEMIQTEIYGKVKSIETRLNVPFPEEQNVGNYRFASEQGGGAFLDLGTY 185 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCDWTFQAVLKYADGLEAECLTSFEQPFRASHTL 250 W+Q +Q + LQP I AQ + P+G D F+A L + G SFE F A H + Sbjct: 186 WIQLVQMSLGLQPDTIEAQCELNRPDGVDLIFEARLNFPQGSFTTFYCSFEHSFEAHHWI 245 Query: 251 YFDHTVLTIPDFFRPVKGFYKIKIRHDLPDNHST-LCEFEPMNYYVSQLEAFAEIMSGQR 309 F+ + + +F RP+ G I + D +F NYYV+QL F+++++G + Sbjct: 246 KFEKAQIKVRNFLRPMFG-QSITLEICPVDTEEIEKFKFPAQNYYVNQLNFFSQVIAG-K 303 Query: 310 AEKLEAVWERVQMHSLIMAEARQHRVYRE 338 E + + R ++ + H+ YR+ Sbjct: 304 IENIPLIQSRDRVKLMEEIYNLAHQKYRQ 332 >C0T2L9.1 C0T2L9_9PSEU Predicted dehydrogenase Length = 325 Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 147/307 (47%), Gaps = 4/307 (1%) Query: 14 ILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXXXXX 73 ++GA+ IAV A+L+PAR E V + A+A T E+A + +P Sbjct: 1 MIGATGIAVRAVLDPARRREDVRVRAVAASTPERAETFRAEHGLPVAHADYRALVRDEGI 60 Query: 74 DGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEGLMI 133 D VY++L N H WA A AGKHV+ EKP+ L EA L A G + E ++ Sbjct: 61 DTVYVSLHNSAHAHWAAEAARAGKHVVVEKPLCLGRREAHALRRAAGDAGV-HVVEAVIT 119 Query: 134 AFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCYWLQ 193 A HPWQ A++ +V S + G+L I + I G YR GGGAF D YWL Sbjct: 120 AGHPWQAAVRELVASRELGELSGISSHIAFDLPP--GGGYRFRPELGGGAFHDTASYWLD 177 Query: 194 FLQAIVSLQPREIAAQSSFDGPEGCDWTFQAVLKYADGLEAECLTSFEQPFRASHTLYFD 253 +QA+V L + S F GP G D F AVL+ G+ AE S P+RA H F Sbjct: 178 AVQAVVGLGGATASGHSEFSGPNGVDLEFDAVLRLPSGVRAELRASLVGPYRADHEFRFT 237 Query: 254 HTVLTIPDFFRPVKGFYKIKIRHDLPDNHSTLCEFEPMNYYVSQLEAFAEIMSGQRAEKL 313 + +F RP G + + + + F ++YY +QL+ ++ + A Sbjct: 238 GGKARLRNFLRPAAGPFPVNLVLQRDGGAREVRSFPAVSYYDAQLDRIMALLE-RPARAD 296 Query: 314 EAVWERV 320 +AV ERV Sbjct: 297 DAVVERV 303 >A4IPC2.1 A4IPC2_GEOTN Oxidoreductase Length = 329 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 103/334 (30%), Positives = 156/334 (46%), Gaps = 28/334 (8%) Query: 11 RLGILGASNIAVPALLEPARYVETVSIAAIANRTFEKAAKLAETYQIPYVAXXXXXXXXX 70 R GILGA+NIA L+ R ++A+A+++ K E +Q+P + Sbjct: 4 RWGILGAANIAYDQLVPALRRSNRAIVSAVASKSKRKV----ERFQVPTIYESYEELLQS 59 Query: 71 XXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPKLAEG 130 D VYI L N LH EWA++A+N GKHVL EKP AL E + A EK G E Sbjct: 60 PTIDAVYIPLPNALHAEWAIKAMNCGKHVLLEKPAALTESEMIEMKTAAEKNGVV-FMEA 118 Query: 131 LMIAFHPWQQALKSIVDSGQFGQLHRIRTRITVPAKDRHAGNYRSVKAKGGGAFADLGCY 190 M FH + +K +++SG G+ ++ + +DR + R GGGA D+GCY Sbjct: 119 FMYQFHRQHKRMKELLESGIIGEYRHVKAHFSWMLRDRE--DIRLKPELGGGAMRDVGCY 176 Query: 191 WLQFLQAIVSLQPREIAAQSSFDGPEGCDWTFQAVLKYADGLEAECLTSFEQPFRASHTL 250 L + IV L+P +I+ G D T L AE S E PF + + Sbjct: 177 GLHVVTQIVGLKPIKISMFGKIHPEFGVDTTSTCTLIDEKNHTAEISASMELPFINRYEI 236 Query: 251 YFDHTVLTIPDFFRP---VKGFYKIKIRHDLPDNHSTLCEFEPM--NYYVSQLEAFAEIM 305 + + + FRP GF KI +R D +S + FE + + Y++Q+E F + + Sbjct: 237 IGSNGSIIVDSAFRPDVSNDGFGKITVR----DENSHVIFFERIKDDQYLNQVEHFHDCI 292 Query: 306 ------------SGQRAEKLEAVWERVQMHSLIM 327 S + A LE ++ ++ HS++M Sbjct: 293 LENKEPIYNASHSLEMALYLEKGYQSLENHSIVM 326 >Q9K689.1 Q9K689_BACHD Oxidoreductase Length = 334 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 9/264 (3%) Query: 8 TDYRLGILGASNIAVPALLEPARYVETVSIAAIANRT-FEKAAKLAETYQIPYVAXXXXX 66 + R GILG + IA L+ + + A+++R EKA A+ IP Sbjct: 3 NNVRWGILGTAGIAKKQLIPAIKRASNAEVVAVSSRNDMEKANCYADECDIPKRYARYED 62 Query: 67 XXXXXXXDGVYIALSNELHTEWAVRALNAGKHVLAEKPIALNAEEAERLGMAKEKPGSPK 126 D VYI L N LH WA +A GKHVL EKP AL A EA+ + A G Sbjct: 63 LLNDPDIDAVYIPLPNHLHLTWAKKAAEHGKHVLCEKPAALTAAEAKEMVDACAAHGV-V 121 Query: 127 LAEGLMIAFHPWQQALKSIVDSGQFGQLHRIRTRIT--VPAKDRHAGNYRSVKAKGGGAF 184 E M FHP +K ++DSG+ G++ IR+ + +P + A N R + GGG+ Sbjct: 122 FMEAFMYQFHPQHGEVKRLIDSGKIGEVRLIRSNFSFQLPLE---ANNIRLNREMGGGSL 178 Query: 185 ADLGCYWLQFLQAIVSLQPREIAAQSSFDGPE-GCDWTFQAVLKYADGLEAECLTSFEQP 243 D+GCY + + + +P A + + PE G D +F VL+ G+ + +SFEQP Sbjct: 179 YDVGCYCIHLTRYLTGKEPVH-AYGTGYLHPELGVDTSFTGVLQMEGGVTSVFTSSFEQP 237 Query: 244 FRASHTLYFDHTVLTIPDFFRPVK 267 S+ + + +P FRP K Sbjct: 238 ADDSYEVVGTEGTIIVPYAFRPDK 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,905,267,546 Number of extensions: 72521048 Number of successful extensions: 149764 Number of sequences better than 1.0e-05: 1649 Number of HSP's gapped: 149723 Number of HSP's successfully gapped: 1650 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)