BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0049.p (397 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97TG5.1 Q97TG5_CLOAB AstB/chuR/nirj-related protein 452 e-125 A9E2M1.1 A9E2M1_9FLAO AstB/chuR/nirj-related protein 327 2e-87 C0T2L6.1 C0T2L6_9PSEU Predicted Fe-S oxidoreductase 326 2e-87 C4XH47.1 C4XH47_9DELT Putative uncharacterized protein 114 1e-23 A0LKI2.1 A0LKI2_SYNFM Radical SAM domain protein 112 8e-23 >Q97TG5.1 Q97TG5_CLOAB AstB/chuR/nirj-related protein Length = 390 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 200/389 (51%), Positives = 282/389 (72%), Gaps = 1/389 (0%) Query: 1 MQPTSRVNLDAKSFEALKRTIRNVVIPHRERKHDPGFKTVMPEIMSLKLTNRCNLRCKHC 60 MQP +RV+ +AK LKRTIRN+ +P +ERK++P + T +P+I+ +K+TN CNLRCKHC Sbjct: 1 MQPKTRVSYEAKDLNTLKRTIRNISVPLKERKNNPRYATKLPDIVGIKITNNCNLRCKHC 60 Query: 61 YQWNESGYHHDMDTAEQNLDMDLEMIRKLLQETDEAKSRLYLWGGEPLFHRDTKPILELL 120 Y+W + GYH +MD EQ D+DL++ K+L ET E KSRLYLWGGEPL H+ I ++L Sbjct: 61 YEWGKKGYHMNMDKEEQQRDIDLKLFEKILNETKELKSRLYLWGGEPLCHKQFDKIADML 120 Query: 121 KEHPRDTTICTNAYLIHKYEEELCAISDNLELLIPIEGFEDEHDFLRGRGSFHKVIENVD 180 + PR+ ICTN + + L ISDNLELLIPIEGFE+ HD +RG+G+F KV+E+V Sbjct: 121 VQDPREIAICTNTLMFDNNLDSLIKISDNLELLIPIEGFEEAHDLIRGKGNFKKVVESVK 180 Query: 181 RLVELREQGRFRGRISVHNVINDNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSLEM 240 L++L+ +G ++G+IS+H+VINDN+ RLYELVEFFE GVD+V L +PWYIS ET+ +M Sbjct: 181 LLIDLKRKGIYKGKISIHSVINDNICDRLYELVEFFEGLGVDMVFLAYPWYISEETACKM 240 Query: 241 DRYYDEHFQWLAELPPDHRSSWHAFKYHIKPGNVPKLTEDLKRINSNTWHNTRIRYQPGL 300 D+Y+ ++F WL E SWH FKY I P ++ L E +K++ S W N R+R+QP L Sbjct: 241 DKYFKDNFYWLEEANKKKNKSWHCFKYKISPESLENLKEQVKKVCSKVW-NIRVRFQPDL 299 Query: 301 DFDELEDFVAGRPMASRSTSKCLALSTRVDIAPNGMVSACKFFGELAIGNVNEQSLTEIW 360 D ++++ FV G + S CLA+STR+DI +G VS+CK+F E IGN+ + S++EIW Sbjct: 300 DIEDIKSFVFGAEVESLKCRNCLAVSTRMDILADGSVSSCKYFSEFTIGNIKDGSISEIW 359 Query: 361 NSDRYDRLRRILDEGLSPACSKCNVLYLN 389 +S++Y R+R +++ G+SP CSKCN+LYLN Sbjct: 360 HSEQYGRIREVVNSGISPICSKCNLLYLN 388 >A9E2M1.1 A9E2M1_9FLAO AstB/chuR/nirj-related protein Length = 391 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 152/391 (38%), Positives = 239/391 (61%), Gaps = 4/391 (1%) Query: 1 MQPTSRVNLDAKSFEALKRTIRNVVIPHRERKHDPGFKTVMPEIMSLKLTNRCNLRCKHC 60 MQP S ++ + K I + ER DP + T +P+ + LKLTNRC+LRC HC Sbjct: 1 MQPKSNKPYKKEALQRFKEKIDFTRKCYTERMKDPTYATKVPQEIGLKLTNRCDLRCTHC 60 Query: 61 YQWNESGYHHDMDTAEQNL--DMDLEMIRKLLQETDEAKSRLYLWGGEPLFHRDTKPILE 118 +QWN+ G+H ++D E + D+D+ +++KLL++T E KS +YLWGGEP+ + ++E Sbjct: 61 FQWNDIGFHRELDKKEVKVQGDLDIGIVKKLLEQTREQKSHIYLWGGEPMIYAYWNELVE 120 Query: 119 LLKEHPRDTTICTNAYLIHKYEEELCAISDNLELLIPIEGFEDEHDFLRGRGSFHKVIEN 178 LL RDT +CTN I + + L IS+ L L+ +EG E +HD LRG+G+F K++ N Sbjct: 121 LLANDQRDTVVCTNGLSIKRKIDSLVKISEKLTTLVSVEGLEAQHDKLRGKGTFQKIMSN 180 Query: 179 VDRLVELREQGRFRGRISVHNVINDNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSL 238 +D L+ L++QG ++G IS+ V ++++I LYE E+FE KG+D + FPWYI + + Sbjct: 181 LDHLISLQQQGIYKGHISIAAVFSEDLIPHLYECCEYFESKGIDTLYFNFPWYIPEDEAE 240 Query: 239 EMDRYYDEHFQWLAELPPDHRSSWHAFKYHIKPGNVPKLTEDLKRINSNTWHNTRIRYQP 298 +M +Y+++F WL E P + +W +F +HI L ++RI TW N RIR+QP Sbjct: 241 KMTNFYNDNFTWL-ERPRIRKRTWESFDFHIDMKLYDDLLAQIRRILEKTW-NIRIRFQP 298 Query: 299 GLDFDELEDFVAGRPMASRSTSKCLALSTRVDIAPNGMVSACKFFGELAIGNVNEQSLTE 358 L+ E+E ++ G+ A + CL +S R+D+ P+G V +CK F E +GN+ E + E Sbjct: 299 DLELHEMEAYLKGKSEAPSCKATCLGISNRMDVMPSGNVVSCKKFTEFKMGNLYENDMNE 358 Query: 359 IWNSDRYDRLRRILDEGLSPACSKCNVLYLN 389 +W+ D + + R + L P CSKC +L+ N Sbjct: 359 VWHGDTFTKFRETHNNELMPICSKCEILFSN 389 >C0T2L6.1 C0T2L6_9PSEU Predicted Fe-S oxidoreductase Length = 391 Score = 326 bits (836), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 150/390 (38%), Positives = 240/390 (61%), Gaps = 2/390 (0%) Query: 1 MQPTSRVNLDAKSFEALKRTIRNVVIPHRERKHDPGFKTVMPEIMSLKLTNRCNLRCKHC 60 M P + L+ K F L+RT+ R + D + T +P +SL+LT +CNLRC HC Sbjct: 1 MHPRTARTLNQKEFHDLRRTVAIRAETRRNVEVDATYATPLPREVSLQLTYKCNLRCNHC 60 Query: 61 YQWNESGYHHDMDTAEQNLDMDLEMIRKLLQETDEAKSRLYLWGGEPLFHRDTKPILELL 120 YQWN+ G+ HD +Q ++DL+++ +L+ TD+ +++++LWGGEPL H I +LL Sbjct: 61 YQWNDQGFFHDFSKVKQRTELDLDIVDDVLRTTDDTRAKVFLWGGEPLMHSRFGEIAKLL 120 Query: 121 KEHPRDTTICTNAYLIHKYEEELCAISDNLELLIPIEGFEDEHDFLRGRGSFHKVIENVD 180 PR +CTNA LI + E L I L +L+ ++G +H+ LRG+G+F + I+NV Sbjct: 121 ARTPRTVNLCTNALLIKRNLEHLLTIGPGLNVLVSLDGLGADHEALRGKGTFPRTIDNVR 180 Query: 181 RLVELREQGRFRGRISVHNVINDNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSLEM 240 L++L++ G ++G +S+ ++++ +G + E +E+ E+ GV+ V FPW+IS E + M Sbjct: 181 LLLDLQKSGEYQGEVSLSCMVSNETVGSMREFMEWAEELGVNSVYFQFPWFISPEVASAM 240 Query: 241 DRYYDEHFQWLAELPPDHRSSWHAFKYHIKPGNVPKLTEDLKRINSNTWHNTRIRYQPGL 300 D Y E+F WL P +WH++ Y I+PG + L + + TW N RIRYQP L Sbjct: 241 DDMYAENFAWLNPPAPGTTPTWHSYTYRIEPGLIGALRRSMAELAERTW-NVRIRYQPQL 299 Query: 301 DFDELEDFVAGRPMASRSTSKCLALSTRVDIAPNGMVSACKFFGELAIGNVNEQSLTEIW 360 + DE+EDFV G ++ ++CLA+S R+++ +G VS+CKFF E IG+++E + ++W Sbjct: 300 EPDEVEDFVLGASRPAQKRNRCLAVSNRLEVHADGKVSSCKFFPEFVIGDLHESGVAQVW 359 Query: 361 NSDRYDRLRRIL-DEGLSPACSKCNVLYLN 389 + + R+R +L L P CSKC +LYLN Sbjct: 360 QGEAFRRVRTVLRGTSLMPVCSKCILLYLN 389 >C4XH47.1 C4XH47_9DELT Putative uncharacterized protein Length = 404 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 171/352 (48%), Gaps = 23/352 (6%) Query: 45 MSLKLTNRCNLRCKHCYQWNESGYHHDMDTAE-QNLDMDLEMIRKLLQETDEAKSR--LY 101 +S+++T+ CNLRC C QW + G+ H D + + ++ E LL++ R +Y Sbjct: 57 LSIRITDVCNLRCHTCGQWGDQGFLHGCDLKDLKKKEISPERYLALLEDLARHGHRPSVY 116 Query: 102 LWGGEPLFHRDTKPILELLKEHPRDTTICTNAYLIHKYEEELCAISDNLELLIPIEGFED 161 LWGGEP ++ I+E E T+I TNA + + L A L L + I+G Sbjct: 117 LWGGEPTMYKGWLEIIERATELRMPTSIATNATRVAAAADRLAAAPMFL-LQMSIDGHSA 175 Query: 162 E-HDFLR---GRGSFHKVIENVDRLVELREQGRFRGR----ISVHNVINDNMIGRLYELV 213 E H+ R G G HKV++ + L ++E + ++ I+ + L ++ Sbjct: 176 ETHNAARPSAGGGDNHKVVQ--EALSAIKEAKKAHKTQLPLVAALTTISSANVHHLVDIY 233 Query: 214 EFFEQKGVDLVLLCFPWYISAETSLEMDRYYDEHFQWLAELPPDHRSSWHAFKYHIKPGN 273 E ++ + VDL + W+I +++ D + F + +L W K H Sbjct: 234 EAYKDR-VDLFVYYLSWWIDEKSAKAHDEDFTRRFGFTPKLHWGWVGDW-TIKDH---ET 288 Query: 274 VPKLTEDLKRINSNTWHNTRIRYQPGL-DFDELEDFVAGRPMASRSTSKCLALSTRVDIA 332 + K +++R S W+N + P + D L ++ ++ ++C+++ V++ Sbjct: 289 LNKQLAEVQR-RSKGWNNPPVNIIPNVAGVDSLREYYTNHE-STFGYNQCISIYQAVELD 346 Query: 333 PNGMVSACKFFGELAIGNVNEQSLTEIWNSDRYDRLRRIL-DEGLSPACSKC 383 NG +S C+ + + +GNV + ++TE+WNS+ Y R R L EGL P+C++C Sbjct: 347 SNGDMSPCRDYHDYIVGNVRDHTITELWNSESYRRFRASLHTEGLMPSCTRC 398 >A0LKI2.1 A0LKI2_SYNFM Radical SAM domain protein Length = 404 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 101/365 (27%), Positives = 166/365 (45%), Gaps = 28/365 (7%) Query: 34 DPGFKTVMPEIMSLKLTNRCNLRCKHCYQWNESGYHHDMDTAE-----QNLDMDLEMIRK 88 D GF + ++ S ++T+ CNLRC C QW + G+ H D E +LD +E++ Sbjct: 47 DEGFAKKIRQV-SFRITDICNLRCTTCGQWGKDGFLHGRDQKELKKQEVSLDRYVEVLSD 105 Query: 89 LLQETDEAKSRLYLWGGEPLFHRDTKPILELLKEHPRDTTICTNAYLIHKYEEELCAISD 148 L++E + +YLWGGEP+ + + ++E +I TN + L A Sbjct: 106 LVREGH--RPFVYLWGGEPMLYEGSVELIERASMMGLPVSIATNGTHVAANARRLAAAPM 163 Query: 149 NLELLIPIEGFEDE-HDFLR----GRGSFHKVIENVDRLVELRE-QGRFRGRISVHNVIN 202 L L + I+G E H+ R G +F + + RE QG I+ VI+ Sbjct: 164 FL-LQMSIDGHCAEVHNRARPALGGMNNFAAIEAAFQAVRRERETQGGSLPLIASLTVIS 222 Query: 203 DNMIGRLYELVEFFEQKGVDLVLLCFPWYISAETSLEMDRYYDEHFQWLAELPPDHRSSW 262 L ++ E F + DL + W+I E + R +DE F P W Sbjct: 223 RTNSRHLVDIYETFRDR-ADLFVFYLSWWIDEERA----RLHDEDFSRRFGFTPTLHWGW 277 Query: 263 HAFKYHIKPGNVPKLTEDLKRIN--SNTWHNTRIRYQPGL-DFDELEDFVAGRPMASRST 319 KP + L +K + S + + + P + D+L + A Sbjct: 278 TG---DWKPDDCDALERQMKTLEDVSRGLNAPPVIFIPNIRGGDDLRTYFTDH-RARFGF 333 Query: 320 SKCLALSTRVDIAPNGMVSACKFFGELAIGNVNEQSLTEIWNSDRYDRLRRIL-DEGLSP 378 +C+++ V++ NG +S C+ + + +GN+ E+S+TE+WNS RY + RR L +GL P Sbjct: 334 DRCISIYQAVEVNSNGDMSPCRDYHDYVVGNIKERSITELWNSARYRQFRRSLTKDGLMP 393 Query: 379 ACSKC 383 ACS+C Sbjct: 394 ACSRC 398 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,455,845,902 Number of extensions: 104592285 Number of successful extensions: 240993 Number of sequences better than 1.0e-05: 212 Number of HSP's gapped: 241572 Number of HSP's successfully gapped: 214 Length of query: 397 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 259 Effective length of database: 1,760,596,133 Effective search space: 455994398447 Effective search space used: 455994398447 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)