BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0048.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q97TG4.1 Q97TG4_CLOAB Similar to C-ter. of UDP-glucuronosyltrans... 355 5e-96 B8I677.1 B8I677_CLOCE Putative uncharacterized protein 343 1e-92 C0T2M0.1 C0T2M0_9PSEU Putative uncharacterized protein 209 3e-52 A9E2L9.1 A9E2L9_9FLAO YpfP-like protein 146 3e-33 >Q97TG4.1 Q97TG4_CLOAB Similar to C-ter. of UDP-glucuronosyltransferases, YpfP B.subtilis related Length = 372 Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 167/369 (45%), Positives = 238/369 (64%), Gaps = 7/369 (1%) Query: 1 MNNTVTVLCSGFGLGFYVPGLLIERKLKALGIEAQIEVFETLMSDSKKKLTDDSRKAYQK 60 M+N VT+LCSGFGLGFYVPGL+I LK G+++++ VFE+ + K+ S++ Y K Sbjct: 1 MSNKVTILCSGFGLGFYVPGLIINYSLKNRGVDSEVAVFESYIIKDKRDKILLSKQTYHK 60 Query: 61 NFAVALTSQKIPGDIRNSLDSAAVEQIFRQWRQEKRQHFIALSGHWVHVMDRYRE-TAGF 119 NF+VAL +Q++P DIR S+DS +EQ+ W++E+R++FI +SGHW++++D YR+ Sbjct: 61 NFSVALVAQRMPWDIRKSIDSDRIEQLLDTWKREERRNFIVMSGHWIYILDEYRKRINNK 120 Query: 120 PVYADLLYIDADLSPSWKNLRRLNPGYAEGYHEVSMYDPGKREILCSIDAGPQQALPASA 179 P+ A++LYID++ SPSWK L + N Y+E Y EV ++D K+EI + G ++ +P Sbjct: 121 PINAEILYIDSEPSPSWKGLNKYNANYSENYDEVFLFDARKKEIPYYLPVGSRETIPFEK 180 Query: 180 RNGRLVVHGGGWGIGTFREKFAALESAGYELDIAAYSSEEIGETIHGRRYYMNDPEWRTW 239 R R ++HGGGWG+GT++EK LE +LDIAAYS +EI + + RY+M DP WR W Sbjct: 181 RENRFMIHGGGWGMGTYQEKIHELEENNLKLDIAAYSEDEIEDGKNKHRYFMMDPSWRAW 240 Query: 240 LRDSNGQYTFPPFAEVTGNQASHFPPCXXXXYQEGMYGVIRQASAVISKPGGGALIDSLA 299 + FPPF+EV N F + V+R A AVISKPGGG LIDSLA Sbjct: 241 ---EGNNFIFPPFSEVKPNVPKRFESKEEY---HSSFDVLRNAKAVISKPGGGTLIDSLA 294 Query: 300 SGTPLVLLDPFGPHEKINSDLWVELGYGIRYGEWAGTGFDREELRKLSDNLQSAAGRYPD 359 + TP++LL+PFG HEK+N+DLW LG GIRY W GF + L+ + DNL + Sbjct: 295 AATPIILLEPFGHHEKVNADLWEHLGLGIRYEAWKEFGFKLDILKVMHDNLVKQRNNAVN 354 Query: 360 YAASYAEQL 368 Y Y ++L Sbjct: 355 YVDDYLDRL 363 >B8I677.1 B8I677_CLOCE Putative uncharacterized protein Length = 369 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 230/364 (63%), Gaps = 4/364 (1%) Query: 2 NNTVTVLCSGFGLGFYVPGLLIERKLKALGIEAQIEVFETLMSDSKKKLTDDSRKAYQKN 61 N VTVLCSGFGLG Y+PGLLI+R+L+ G+ +IEVFE L+S +K+ SRKAY N Sbjct: 3 NIKVTVLCSGFGLGLYIPGLLIDRRLREKGVSTEIEVFENLISKNKRNAIQKSRKAYHSN 62 Query: 62 FAVALTSQKIPGDIRNSLDSAAVEQIFRQWRQEKRQHFIALSGHWVHVMDRYRE-TAGFP 120 FAVAL S ++P DIR S+D+ +++ + W +E R+ FI LSGHW+HV+D YRE A Sbjct: 63 FAVALMSARMPMDIRQSIDNELADELMKCWAEENRRDFIVLSGHWLHVIDEYRERMAPET 122 Query: 121 VYADLLYIDADLSPSWKNLRRLNPGYAEGYHEVSMYDPGKREILCSIDAGPQQALPASAR 180 V A++LY+D DL PSWK+L++ P Y+ Y EV +YD K++I I ++ +P R Sbjct: 123 VNAEILYVDCDLPPSWKSLQQYKPDYSFNYKEVWLYDFEKKQIQFQIPISNEKPIPFMER 182 Query: 181 NGRLVVHGGGWGIGTFREKFAALESAGYELDIAAYSSEEIGETIHGRRYYMNDPEWRTWL 240 R ++HGGGWG+GT++ K L+ G +LDI Y E G R +M DP WR W Sbjct: 183 PQRCIIHGGGWGMGTYQGKIPELQEKGLQLDIVLYDIGEATRRREGDRCFMVDPSWRAWN 242 Query: 241 RDSNGQYTFPPFAEVTGNQASHFPPCXXXXYQEGMYGVIRQASAVISKPGGGALIDSLAS 300 ++ NG Y FPP A++ ++ F Y E ++ V ++A A+I KPG G L+DS++S Sbjct: 243 KNKNGSYEFPPLAQIMPSEEPVFK--NKEEYHE-LFDVTKKARAIIGKPGAGTLMDSISS 299 Query: 301 GTPLVLLDPFGPHEKINSDLWVELGYGIRYGEWAGTGFDREELRKLSDNLQSAAGRYPDY 360 TP+++L+PFG HE+ N+ LW +LGYGI Y W + F E LR+L DNL DY Sbjct: 300 ATPMIMLEPFGEHEEKNTQLWEQLGYGITYNMWKESDFSMEILRELHDNLVKGRKAALDY 359 Query: 361 AASY 364 SY Sbjct: 360 TESY 363 >C0T2M0.1 C0T2M0_9PSEU Putative uncharacterized protein Length = 360 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 198/362 (54%), Gaps = 13/362 (3%) Query: 4 TVTVLCSGFGLGFYVPGLLIERKLKALGIEAQIEVFETLMSDSKKKLTDDSRKAYQKNFA 63 ++ VL SG LG +VPGLL+ R+L LG+ A+++V E + + ++L S+ A+ ++F Sbjct: 2 SIAVLTSGVALGVHVPGLLLARRLAELGVAARVDVLENHLPERTRELIPASKVAFHRDFR 61 Query: 64 VALTSQKIPGDIRNSLDSAAVEQIFRQWRQEKRQHFIALSGHWVHVMDRYRETAGFPVYA 123 VAL Q++ D V ++R+W ++ + + LSG W+ RY A V Sbjct: 62 VALAGQRLAARNTTEPDEELVAGLWREWERDGVELLVVLSGFWLPTAHRY-ALAHDGVRV 120 Query: 124 DLLYIDADLSPSWKNLRRLNPGYAEGYHEVSMYDPGKREILCSIDAGPQQALPASARNGR 183 ++D+ SPS+ + G + +V + + + +I ++ P R+GR Sbjct: 121 RSCHVDSVASPSFTSASGAGRGSWAEHEDVWLLERAGSAVARTIPVSREEPAPWGDRDGR 180 Query: 184 LVVHGGGWGIGTFREKFAALESAGYELDIAAYSSEEIGETIHGRRYYMNDPEWRTWLRDS 243 ++ HGGGWG+GT+R A L +AG+ LD+ AY E+ E RY+M DP+W W D+ Sbjct: 181 VLAHGGGWGMGTYRTGAAELGAAGFALDVVAYERSEVPEEQGRNRYFMIDPDWHPW-HDT 239 Query: 244 NGQYTFPPFAEVTGNQASHFPPCXXXXYQEGMYGVIRQASAVISKPGGGALIDSLASGTP 303 FPPF V + + + +G + + R+A AV+SKPGGG L+DSL++ TP Sbjct: 240 G----FPPFGRVRDGEVGY---RRRAEHHDG-FDLTRRAIAVVSKPGGGTLMDSLSAATP 291 Query: 304 LVLLDPFGPHEKINSDLWVELGYGIRYGEWAGTGFDREELRKLSDNLQSAAGR---YPDY 360 +VLL+PFG HE N++LW +LG+GI Y EW G L L NL +A GR YPD Sbjct: 292 VVLLEPFGAHEARNAELWRDLGFGIGYREWVDGGRRVAVLEALHRNLVAARGRVLSYPDE 351 Query: 361 AA 362 A Sbjct: 352 LA 353 >A9E2L9.1 A9E2L9_9FLAO YpfP-like protein Length = 367 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 160/364 (43%), Gaps = 19/364 (5%) Query: 4 TVTVLCSGFGLGFYVPGLLIERKLKALGIEAQIEVFETLMSDSKKKLTDDSRKAYQKNFA 63 T+ +L S G G Y P L++ +LKAL I + E + + ++ A+QK+ Sbjct: 8 TINILTSVIGYGIYFPALIVYEQLKALHYNVNIYIIERYFDEKATSEFELTKTAFQKDVR 67 Query: 64 VALTSQKIPGDIRNSLDSAAVEQIFRQWRQEKRQHFIALSGHWVHVMDRYRETAGFPVYA 123 + + +IP L E++F+ W HF+ SG W+ + Y++ V Sbjct: 68 LVQIASRIPVKYTKKLSDEKTERLFQNWSNNNTTHFLCFSGLWLETLQDYKKQQPNCV-I 126 Query: 124 DLLYIDADLSPSWKNLRRLNPGYAEGYHEVSMYDPGKREILCSIDAGPQQALPASARNGR 183 D+ +D+ +S +W+ L R ++VS +D +I ++ + LP S R+ Sbjct: 127 DICRVDSAVSSTWEALLRHKNLIT---NDVSFFDAKATKINYVLNIPEIKPLPYSERSQN 183 Query: 184 LVVHGGGWGIGTFREKFAALESAGYELDIAAYSSEEIGETIHGRRYYMNDPEWRTWLRDS 243 + +HGGGW +G F K + + +++ +E+ + N P W Sbjct: 184 VTIHGGGWDLGDFTSKTEQF-TKDFHVNLIVNGLQELSA--KNITLFANQPNWNPLYE-- 238 Query: 244 NGQYTFPPFAEVTGNQASHFPPCXXXXYQE--GMYGVIRQASAVISKPGGGALIDSLASG 301 NG FPPF + Y++ G+ V+ ++ A++SKPGG L+DSL + Sbjct: 239 NG---FPPFGRMDSTSK-----LALENYEKHPGILTVLAKSKAIVSKPGGMTLMDSLITE 290 Query: 302 TPLVLLDPFGPHEKINSDLWVELGYGIRYGEWAGTGFDREELRKLSDNLQSAAGRYPDYA 361 TPL+ L G +E N LW L GI W + L+++ + + P + Sbjct: 291 TPLLFLKSVGKNENSNQQLWENLQLGISLEAWQQSKDKTALLQEMQSRILAVKTETPCFI 350 Query: 362 ASYA 365 +Y Sbjct: 351 QTYT 354 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,484,728,455 Number of extensions: 110335000 Number of successful extensions: 260882 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 260873 Number of HSP's successfully gapped: 4 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)