BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0035.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5Z8.1 B3K5Z8_9BACI NADPH-dependent FMN reductase 305 2e-81 B1DCN2.1 B1DCN2_9BACL NADPH-dependent FMN reductase 297 3e-79 A3I6Z0.1 A3I6Z0_9BACI Putative reductase 279 9e-74 B1HZV0.1 B1HZV0_LYSSC Reductase 276 6e-73 B1YEB2.1 B1YEB2_EXIS2 NADPH-dependent FMN reductase 273 4e-72 >B3K5Z8.1 B3K5Z8_9BACI NADPH-dependent FMN reductase Length = 179 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/179 (83%), Positives = 159/179 (88%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESEDYAPA 60 M+ LNIGIILGSTRQGR+SPQVGEWVK IAD RGDA+YEIVDIADYKLPLLGE++ A Sbjct: 1 MSKLNIGIILGSTRQGRLSPQVGEWVKRIADERGDANYEIVDIADYKLPLLGEADATEQA 60 Query: 61 QAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAEH 120 AW KLA+LDGFVFIVQEYNHSI+G LKNALD ARE WNNKAAGIVSYGS GGARAAEH Sbjct: 61 TAWNTKLASLDGFVFIVQEYNHSISGSLKNALDYAREAWNNKAAGIVSYGSVGGARAAEH 120 Query: 121 LRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 LRGILGEL VADVRVHP LSLFTDFENGSVFKPA LH N+N MLDQVLAWSGALK+LR Sbjct: 121 LRGILGELSVADVRVHPALSLFTDFENGSVFKPADLHLVNLNGMLDQVLAWSGALKTLR 179 >B1DCN2.1 B1DCN2_9BACL NADPH-dependent FMN reductase Length = 180 Score = 297 bits (760), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 146/179 (81%), Positives = 154/179 (86%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESEDYAPA 60 M+ LNIGIILGSTRQGRV PQVGEWVK +AD RGDA+YEIVD+ADYKLP+ GE + A Sbjct: 1 MSNLNIGIILGSTRQGRVCPQVGEWVKGVADKRGDANYEIVDVADYKLPMFGEVDASEQA 60 Query: 61 QAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAEH 120 AW AKLA LDGFVFIV EYNHSIT LKNALD AR+ WNNKAAGIVSYGS GGARAAEH Sbjct: 61 GAWNAKLAGLDGFVFIVAEYNHSITASLKNALDFARDAWNNKAAGIVSYGSVGGARAAEH 120 Query: 121 LRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 LRGILGEL VADVRVHP LSLFTDFENGSVFKPA LH NVN MLDQVLAWSGALK+LR Sbjct: 121 LRGILGELSVADVRVHPALSLFTDFENGSVFKPADLHLTNVNGMLDQVLAWSGALKTLR 179 >A3I6Z0.1 A3I6Z0_9BACI Putative reductase Length = 197 Score = 279 bits (713), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 135/180 (75%), Positives = 152/180 (84%), Gaps = 1/180 (0%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGE-SEDYAP 59 M LNIGII+GSTR+GRVSPQV +WVK IAD RGDA+Y ++DIADYKLPLLGE +D + Sbjct: 18 MAELNIGIIIGSTREGRVSPQVAQWVKKIADQRGDANYTVIDIADYKLPLLGEPGQDASG 77 Query: 60 AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAE 119 AQAW+ +A DGFVFIVQEYNHSITG LKNALD R EWNNKAAGIVSYGS GGARAAE Sbjct: 78 AQAWSEVIAKQDGFVFIVQEYNHSITGALKNALDYLRVEWNNKAAGIVSYGSVGGARAAE 137 Query: 120 HLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 HLRGI+GELL+ADVRVHP LSLFTDFENGS FKP A+ T +VN MLDQV+ WS AL ++R Sbjct: 138 HLRGIMGELLIADVRVHPALSLFTDFENGSDFKPQAVQTDSVNQMLDQVIPWSKALYTIR 197 >B1HZV0.1 B1HZV0_LYSSC Reductase Length = 197 Score = 276 bits (706), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 134/180 (74%), Positives = 151/180 (83%), Gaps = 1/180 (0%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGE-SEDYAP 59 M LNIGII+GSTR+GRVSPQV +WVK IAD RGDA+Y ++DIADYKLPLLGE +D + Sbjct: 18 MAELNIGIIIGSTREGRVSPQVAQWVKEIADQRGDANYTVIDIADYKLPLLGEPGQDASG 77 Query: 60 AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAE 119 AQAW+ +A DGFVFIVQEYNHSITG LKNALD R EWNNKAAGIVSYGS GGARAAE Sbjct: 78 AQAWSEIIAKQDGFVFIVQEYNHSITGALKNALDYLRVEWNNKAAGIVSYGSVGGARAAE 137 Query: 120 HLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 HLRGI+GELL+ADVRVHP LSLFTDFENGS FKP A+ +VN MLDQV+ WS AL ++R Sbjct: 138 HLRGIMGELLIADVRVHPALSLFTDFENGSDFKPKAVQADSVNQMLDQVIPWSKALYTIR 197 >B1YEB2.1 B1YEB2_EXIS2 NADPH-dependent FMN reductase Length = 180 Score = 273 bits (699), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 133/180 (73%), Positives = 150/180 (83%), Gaps = 1/180 (0%) Query: 1 MTTLNIGIILGSTRQGRVSPQVGEWVKSIADARGDAHYEIVDIADYKLPLLGESE-DYAP 59 MT LNIGIILGSTR+GR+SPQVG WVK +AD RGDAHY I+DIADYKLPLLGE + D + Sbjct: 1 MTKLNIGIILGSTREGRLSPQVGNWVKELADKRGDAHYTIIDIADYKLPLLGEKDGDASG 60 Query: 60 AQAWAAKLATLDGFVFIVQEYNHSITGVLKNALDSAREEWNNKAAGIVSYGSAGGARAAE 119 A AW+ +A DGFVFI QEYNHSI+ LKNALD R EWNNKAAGIVSYGS GGARAAE Sbjct: 61 AAAWSEAIAVQDGFVFITQEYNHSISASLKNALDYLRVEWNNKAAGIVSYGSVGGARAAE 120 Query: 120 HLRGILGELLVADVRVHPLLSLFTDFENGSVFKPAALHTPNVNAMLDQVLAWSGALKSLR 179 HLRGILGELL+ADVRVHP LSLFTDFENG+V K A + +VN MLDQV+ W+GALK++R Sbjct: 121 HLRGILGELLIADVRVHPALSLFTDFENGAVLKAAPVQADSVNQMLDQVIPWAGALKTIR 180 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,112,366,303 Number of extensions: 43990360 Number of successful extensions: 107104 Number of sequences better than 1.0e-05: 504 Number of HSP's gapped: 106881 Number of HSP's successfully gapped: 504 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)