BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0034.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4J9N6.1 A4J9N6_DESRM Small multidrug resistance protein               97   4e-19
Q2BEZ6.1 Q2BEZ6_9BACI Multidrug resistance protein                     92   1e-17
A3M727.2 A3M727_ACIBT SMR family efflux pump                           88   3e-16
B7I2Q8.1 B7I2Q8_ACIB5 Small multidrug resistance protein               87   4e-16
B7GZS5.1 B7GZS5_ACIB3 Quaternary ammonium compound-resistance pr...    87   4e-16

>A4J9N6.1 A4J9N6_DESRM Small multidrug resistance protein
          Length = 126

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 63/86 (73%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          MAYL L ++I  EL+GTS+LKAS GF++L P++  +V+F  +F+FLS+SLK+IPLN AYA
Sbjct: 1  MAYLYLILAILCELIGTSLLKASAGFSKLFPTLGLLVSFSLAFFFLSLSLKTIPLNLAYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKINTAS 86
          IWSGLG           W+E++N AS
Sbjct: 61 IWSGLGTIATVIISILIWQERVNIAS 86


>Q2BEZ6.1 Q2BEZ6_9BACI Multidrug resistance protein
          Length = 123

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 60/85 (70%)

Query: 2  AYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYAI 61
          AYL L ++IA+EL GTSMLKAS+GFT++ P++  +  F  +F+ LS+SLK+IPL+ AYAI
Sbjct: 3  AYLFLFIAIAAELFGTSMLKASEGFTKIWPALGVLFGFGVAFFALSLSLKTIPLSIAYAI 62

Query: 62 WSGLGXXXXXXXXXXXWKEKINTAS 86
          WSG+G           WKEK+N  S
Sbjct: 63 WSGIGTAATAVIGILIWKEKLNMLS 87


>A3M727.2 A3M727_ACIBT SMR family efflux pump
          Length = 109

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 60/86 (69%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          M+YL LA++IA E++ TS LKASQGFT  +PSI+TVV +  +FY LS++LK+IP+  AYA
Sbjct: 1  MSYLYLAIAIACEVIATSALKASQGFTVPIPSIITVVGYAIAFYLLSLTLKTIPMGIAYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKINTAS 86
          IWSG G           +K+ ++ A+
Sbjct: 61 IWSGAGIILISAIGWIFYKQHLDVAA 86


>B7I2Q8.1 B7I2Q8_ACIB5 Small multidrug resistance protein
          Length = 109

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 60/86 (69%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          M+YL LA++IA E++ TS LKASQGFT  +PSI+TVV +  +FY LS++LK+IP+  AYA
Sbjct: 1  MSYLYLAIAIACEVIATSALKASQGFTVPIPSIITVVGYAVAFYLLSLTLKTIPIGIAYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKINTAS 86
          IWSG G           +K+ ++ A+
Sbjct: 61 IWSGAGIILISAIGWIFYKQHLDLAA 86


>B7GZS5.1 B7GZS5_ACIB3 Quaternary ammonium compound-resistance protein qacE
          (Quaternaryammonium determinant E)
          Length = 109

 Score = 87.4 bits (215), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 60/86 (69%)

Query: 1  MAYLLLAVSIASELLGTSMLKASQGFTRLVPSIVTVVAFVCSFYFLSISLKSIPLNTAYA 60
          M+YL LA++IA E++ TS LKASQGFT  +PSI+TVV +  +FY LS++LK+IP+  AYA
Sbjct: 1  MSYLYLAIAIACEVIATSALKASQGFTVPIPSIITVVGYAVAFYLLSLTLKTIPIGIAYA 60

Query: 61 IWSGLGXXXXXXXXXXXWKEKINTAS 86
          IWSG G           +K+ ++ A+
Sbjct: 61 IWSGAGIILISAIGWIFYKQHLDLAA 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 439,689,838
Number of extensions: 10606001
Number of successful extensions: 27517
Number of sequences better than 1.0e-05: 1395
Number of HSP's gapped: 27620
Number of HSP's successfully gapped: 1395
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)