BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0032.p
         (393 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5ECX2.1 A5ECX2_BRASB Putative uncharacterized protein                 77   4e-12
C3HXE5.1 C3HXE5_BACTU Putative uncharacterized protein                 77   4e-12
C3FH61.1 C3FH61_BACTB Putative uncharacterized protein                 76   5e-12
C3CYK0.1 C3CYK0_BACTU Putative uncharacterized protein                 76   5e-12
C3CFS2.1 C3CFS2_BACTU Putative uncharacterized protein                 76   5e-12

>A5ECX2.1 A5ECX2_BRASB Putative uncharacterized protein
          Length = 449

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 31  DPVLQIQAEKSNQDKA-SAENRGTGRDYIFQNSDKTLLTEDNLSNIDSRMLELARNEIFA 89
           DPVL    E +N D    AEN GT   +IF +SD+ LLT   L+ +    L LA+NEIFA
Sbjct: 344 DPVLN-PVEAANVDLLDRAENGGTS-GFIFPDSDRRLLTAAELARLSKAELRLAKNEIFA 401

Query: 90  RHGQVFKRPDLKDYFAGKRWYTADADYNGSLTDTESRNLKLIQKHEK 136
           R G+ F  PDLK YF    WY   + +N +LT  E  N+KLI +  +
Sbjct: 402 RRGRFFDAPDLKAYFGRFAWYV-PSTWNPTLTGVEETNVKLIDQMSR 447


>C3HXE5.1 C3HXE5_BACTU Putative uncharacterized protein
          Length = 415

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 52/79 (65%)

Query: 57  YIFQNSDKTLLTEDNLSNIDSRMLELARNEIFARHGQVFKRPDLKDYFAGKRWYTADADY 116
           +IF +SD   LT  +L+ +    L++ARNEI+ARHG +F+  D++ YFA + WY  +  +
Sbjct: 337 FIFPDSDIRKLTSTDLTYLSKEQLKIARNEIYARHGHIFQTKDMQAYFAKQSWYRENPYF 396

Query: 117 NGSLTDTESRNLKLIQKHE 135
            G LTD ES N++LI+  E
Sbjct: 397 TGKLTDIESYNVELIKSRE 415


>C3FH61.1 C3FH61_BACTB Putative uncharacterized protein
          Length = 411

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%)

Query: 57  YIFQNSDKTLLTEDNLSNIDSRMLELARNEIFARHGQVFKRPDLKDYFAGKRWYTADADY 116
           +IF +SD   LT  +L+ +    L++ARNEI+ARHG +F+  D++ YFA + WY  +  +
Sbjct: 333 FIFPDSDIRKLTSTDLTYLSKEQLKIARNEIYARHGHIFQTKDMQAYFAKQSWYRENPYF 392

Query: 117 NGSLTDTESRNLKLIQKHE 135
            G+LTD E+ N++LI+  E
Sbjct: 393 TGTLTDIETYNIELIKSRE 411


>C3CYK0.1 C3CYK0_BACTU Putative uncharacterized protein
          Length = 411

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%)

Query: 57  YIFQNSDKTLLTEDNLSNIDSRMLELARNEIFARHGQVFKRPDLKDYFAGKRWYTADADY 116
           +IF +SD   LT  +L+ +    L++ARNEI+ARHG +F+  D++ YFA + WY  +  +
Sbjct: 333 FIFPDSDIRKLTSTDLTYLSKEQLKIARNEIYARHGHIFQTKDMQAYFAKQSWYRENPYF 392

Query: 117 NGSLTDTESRNLKLIQKHE 135
            G+LTD E+ N++LI+  E
Sbjct: 393 TGTLTDIETYNIELIKSRE 411


>C3CFS2.1 C3CFS2_BACTU Putative uncharacterized protein
          Length = 411

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 53/79 (67%)

Query: 57  YIFQNSDKTLLTEDNLSNIDSRMLELARNEIFARHGQVFKRPDLKDYFAGKRWYTADADY 116
           +IF +SD   LT  +L+ +    L++ARNEI+ARHG +F+  D++ YFA + WY  +  +
Sbjct: 333 FIFPDSDIRKLTSTDLTYLSKEQLKIARNEIYARHGHIFQTKDMQAYFAKQSWYRENPYF 392

Query: 117 NGSLTDTESRNLKLIQKHE 135
            G+LTD E+ N++LI+  E
Sbjct: 393 TGTLTDIETYNIELIKSRE 411


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,525,482,875
Number of extensions: 112289625
Number of successful extensions: 267672
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 267683
Number of HSP's successfully gapped: 82
Length of query: 393
Length of database: 3,060,696,203
Length adjustment: 138
Effective length of query: 255
Effective length of database: 1,760,596,133
Effective search space: 448952013915
Effective search space used: 448952013915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 132 (55.5 bits)