BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0028.p (190 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4Y2.1 B1D4Y2_9BACL Putative uncharacterized protein 180 6e-44 B1DDU7.1 B1DDU7_9BACL Putative uncharacterized protein 119 1e-25 B3K4L1.1 B3K4L1_9BACI Putative ATP-ase 117 5e-25 Q7US35.1 Q7US35_RHOBA Similar to shikimate kinase 79 3e-13 Q13Y66.1 Q13Y66_BURXL Predicted P-loop ATPase protein 77 9e-13 >B1D4Y2.1 B1D4Y2_9BACL Putative uncharacterized protein Length = 197 Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/179 (52%), Positives = 121/179 (67%) Query: 1 MNQLVFFLGPAGAGKTTXXXXXXXXXXXXXXDMDILLRPAADVIMQMHGLDPADRDSAEY 60 M +LVFF+G AGAGKTT DMD +LRPAA IM + GLDP DRDS Y Sbjct: 1 MRKLVFFVGGAGAGKTTLAKALAKRRGAAVFDMDTMLRPAAVQIMTVAGLDPNDRDSEAY 60 Query: 61 KRLCRDLGYRITMDAALDNMGLDCDVFVVGPFTKEAAEPDWIGGELARIGRTLEEIVVKV 120 K+LCRDLGYRITMDAAL+N+G+ + FV+GPFTKE ++P WI ELA G +L+++ VK Sbjct: 61 KKLCRDLGYRITMDAALENVGVGTNAFVIGPFTKEISDPSWIVKELASAGASLDDVDVKA 120 Query: 121 VLVSLGNTGLYRERIEGRHLPLDAWKFQNWETFRTSLGTRTIAWPLPADNILQIDNSDP 179 V+V L + ++ RIE R L D +K +W++F SLG RT+AW LP ++L DNS P Sbjct: 121 VVVYLQDEDMHYSRIEDRGLATDQYKLVHWDSFARSLGRRTLAWELPESSVLYYDNSRP 179 >B1DDU7.1 B1DDU7_9BACL Putative uncharacterized protein Length = 201 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 92/178 (51%), Gaps = 1/178 (0%) Query: 1 MNQLVFFLGPAGAGKTTXXXXXXXXXXXXXXDMDILLRPAADVIMQMHGLDPADRDSAEY 60 M +LVFF+G AG GKTT D D + + +++ +GLD DRDS Y Sbjct: 1 MQKLVFFVGVAGTGKTTVARKISERIPAAFLDRDTVGGRFVEAMLERNGLDKNDRDSDFY 60 Query: 61 KRLCRDLGYRITMDAALDNMGLDCDVFVVGPFTKEAAEPDWIGGELARIGRTLEEIVVKV 120 K+ RDL Y T D ++N+ +VF++ PFT E WI ++ G T E++ VKV Sbjct: 61 KQNLRDLEYDTTKDICIENLAAGQNVFMISPFTAELKNNAWIKEVISAAGLTREQVDVKV 120 Query: 121 VLVSLGNTGLYRERIEGRHLPLDAWKFQNWETFRTSLG-TRTIAWPLPADNILQIDNS 177 ++V+L N L + RI GR D WK NW F + I W +P +IL DNS Sbjct: 121 IVVTLENIELQKNRIIGRQTERDQWKLDNWSHFEKRVAFVPDIHWEIPQSSILVYDNS 178 >B3K4L1.1 B3K4L1_9BACI Putative ATP-ase Length = 196 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 1/178 (0%) Query: 1 MNQLVFFLGPAGAGKTTXXXXXXXXXXXXXXDMDILLRPAADVIMQMHGLDPADRDSAEY 60 M +LVFF+G AG GKTT D D + + ++ +GLDP DRDS+ Y Sbjct: 1 MQKLVFFVGVAGTGKTTVAKKLAVRIPAAFLDRDTVGGRFVEKFLESNGLDPNDRDSSFY 60 Query: 61 KRLCRDLGYRITMDAALDNMGLDCDVFVVGPFTKEAAEPDWIGGELARIGRTLEEIVVKV 120 K RDL Y T D ++N+G +VF++ PFT E +WI +A G T ++ VKV Sbjct: 61 KENLRDLEYDTTKDICIENLGAGQNVFMISPFTAELKNREWIEEVIASAGLTKNDVDVKV 120 Query: 121 VLVSLGNTGLYRERIEGRHLPLDAWKFQNWETFRTSLG-TRTIAWPLPADNILQIDNS 177 ++V+L + L +ERI R D WK +W+ F+ + + W +P +I DNS Sbjct: 121 IVVALKDMDLQKERIIDRQTERDQWKLDHWDDFKKRVDFVPEVNWDIPQTSIKVFDNS 178 >Q7US35.1 Q7US35_RHOBA Similar to shikimate kinase Length = 168 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 64/148 (43%), Gaps = 7/148 (4%) Query: 3 QLVFFLGPAGAGKTTXXXXXXXXXXXXXXDMDILLRPAADVIMQMHGLDPADRDSAEYKR 62 +L G AG GKTT D D + P + GL+PADRDS EYKR Sbjct: 5 ELHIVAGAAGVGKTTFGKDLASKLGGVLLDSDTVTEPVVRAGLSAAGLNPADRDSPEYKR 64 Query: 63 LCRDLGYRITMDAALDNMGLDCDVFVVGPFTKEAAEPDWIGGELARIGRTLEEIVVKVVL 122 L RD Y A DN+ V +VGPFT+E P+W R G V V Sbjct: 65 LFRDAVYECLFQTAADNLQ-HIPVVIVGPFTRELENPNWPSQLAERFG------VTPTVW 117 Query: 123 VSLGNTGLYRERIEGRHLPLDAWKFQNW 150 + + R+RIE R P D K +W Sbjct: 118 YLTCDDEVRRQRIEQRANPRDHAKLVDW 145 >Q13Y66.1 Q13Y66_BURXL Predicted P-loop ATPase protein Length = 205 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 80/185 (43%), Gaps = 13/185 (7%) Query: 1 MNQLVFFLGPAGAGKTTXXXXXXXXXXXXX------XDMDILLRPAADVIMQMHGLDPAD 54 M LVFF G AG GKTT D D L + M M DP D Sbjct: 1 MTHLVFFCGHAGTGKTTLAKNLHGPLTKASGTPFCLLDKDTLYGGYSAAAMAMLTGDPND 60 Query: 55 RDSAEYKRLCRDLGYRITMDAALDNMGLDCDVFVVGPFTKEAAEPDWIGGELARIGRTLE 114 RDS + + RD YR +D A DN+ L VVGP ++E E +G Sbjct: 61 RDSPLFLQHLRDPEYRGLLDTARDNLELGVSALVVGPLSREVRERRLFDRAWLGVG---A 117 Query: 115 EIVVKVVLVSLGNTGLYRERIEGRHLPLDAWKFQNWETFRTSLGTRTIAWPLPADNILQI 174 E+V++VV V R+RI R P DA+K +W+ +R R + D++L Sbjct: 118 EVVIRVVWVYTSEETA-RQRIVKRANPNDAYKLAHWDEYRQR---RFVPSGAICDDLLMF 173 Query: 175 DNSDP 179 DN+ P Sbjct: 174 DNTAP 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,066,608,669 Number of extensions: 41204085 Number of successful extensions: 142185 Number of sequences better than 1.0e-05: 57 Number of HSP's gapped: 142090 Number of HSP's successfully gapped: 57 Length of query: 190 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 62 Effective length of database: 1,854,806,283 Effective search space: 114997989546 Effective search space used: 114997989546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)