BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0023.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B2Y0.1 C3B2Y0_BACMY Putative uncharacterized protein 227 6e-58 C3AX57.1 C3AX57_BACMY Putative uncharacterized protein 227 6e-58 C3IKE5.1 C3IKE5_BACTU Putative uncharacterized protein 221 3e-56 Q3EPT1.1 Q3EPT1_BACTI Putative uncharacterized protein 220 8e-56 C3BJR6.1 C3BJR6_9BACI Putative uncharacterized protein 219 1e-55 >C3B2Y0.1 C3B2Y0_BACMY Putative uncharacterized protein Length = 212 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 111/208 (53%), Positives = 136/208 (65%) Query: 19 YWRPYSPAQGSPNAMHPSMPVYAGAAPECFSRAQVNLILHMRTLWEQHVAWTRMVIRSIV 78 YW+ Y P S ++ S+ +V+L +MR+LWEQHVAWTRM I SI+ Sbjct: 4 YWQSYYFTHDIPYLDWNSTATFSPLRNYRVSKNEVDLKSYMRSLWEQHVAWTRMAIISII 63 Query: 79 FDLPDTEVTVARLLQNGPDMGDALKPFYGAAAGDAYGQLIKEHLVIAADLVXXXXXXXXX 138 F+LPD ++ RLLQN PDMG++LKPFYG A Y LIK+HLVIAADLV Sbjct: 64 FNLPDVNFSITRLLQNAPDMGNSLKPFYGDNAAKKYSNLIKDHLVIAADLVKAAKAGNQN 123 Query: 139 XXXXXXXXXXXNGDQIVEFLSRLNPYLPKEDFRKMFYQHLALTKAEAVTLLQKDYKQSVQ 198 N D IVEFLS +NPY+PKE+FRKMFY+HLALTK+EAV +L KDY+ VQ Sbjct: 124 AASIAEKKWYANADDIVEFLSSINPYIPKEEFRKMFYEHLALTKSEAVAILSKDYQAGVQ 183 Query: 199 LYDAIEKGALVMADMISTAIIKQFPQMF 226 LYD IEK AL MAD ++ IIKQFPQ+F Sbjct: 184 LYDKIEKEALEMADALTEGIIKQFPQLF 211 >C3AX57.1 C3AX57_BACMY Putative uncharacterized protein Length = 212 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 111/208 (53%), Positives = 136/208 (65%) Query: 19 YWRPYSPAQGSPNAMHPSMPVYAGAAPECFSRAQVNLILHMRTLWEQHVAWTRMVIRSIV 78 YW+ Y P S ++ S+ +V+L +MR+LWEQHVAWTRM I SI+ Sbjct: 4 YWQSYYFTHDIPYLDWNSTATFSPLRNYRVSKNEVDLKSYMRSLWEQHVAWTRMAIISII 63 Query: 79 FDLPDTEVTVARLLQNGPDMGDALKPFYGAAAGDAYGQLIKEHLVIAADLVXXXXXXXXX 138 F+LPD ++ RLLQN PDMG++LKPFYG A Y LIK+HLVIAADLV Sbjct: 64 FNLPDVNFSITRLLQNAPDMGNSLKPFYGDNAAKKYSNLIKDHLVIAADLVKAAKAGNQN 123 Query: 139 XXXXXXXXXXXNGDQIVEFLSRLNPYLPKEDFRKMFYQHLALTKAEAVTLLQKDYKQSVQ 198 N D IVEFLS +NPY+PKE+FRKMFY+HLALTK+EAV +L KDY+ VQ Sbjct: 124 AASIAEKKWYANADDIVEFLSSINPYIPKEEFRKMFYEHLALTKSEAVAILSKDYQAGVQ 183 Query: 199 LYDAIEKGALVMADMISTAIIKQFPQMF 226 LYD IEK AL MAD ++ IIKQFPQ+F Sbjct: 184 LYDKIEKEALEMADALTEGIIKQFPQLF 211 >C3IKE5.1 C3IKE5_BACTU Putative uncharacterized protein Length = 215 Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 115/214 (53%), Positives = 139/214 (64%), Gaps = 7/214 (3%) Query: 14 FFMQYYWRPYSPAQGSPNAMHP-SMPVYAGAAPECFSRAQVNLILHMRTLWEQHVAWTRM 72 FM YW+ Y +P + S+ Y + E F + +MR+LWEQHVAWTR+ Sbjct: 7 LFMYSYWQSYYSPYHNPYVNYDLSVRNYRISKNENFLKG------YMRSLWEQHVAWTRL 60 Query: 73 VIRSIVFDLPDTEVTVARLLQNGPDMGDALKPFYGAAAGDAYGQLIKEHLVIAADLVXXX 132 I SIVF+LPD VTV RLLQN MG +L+PFYG A Y LIK+HLVIAADLV Sbjct: 61 AIISIVFNLPDVNVTVGRLLQNATHMGLSLEPFYGEDAVKKYSALIKDHLVIAADLVKAA 120 Query: 133 XXXXXXXXXXXXXXXXXNGDQIVEFLSRLNPYLPKEDFRKMFYQHLALTKAEAVTLLQKD 192 NGD+IVEFL+ +NPY+ KE+FRKMFY+HLALTKAEA+T L KD Sbjct: 121 KTGDQNAAAAIEKKWYANGDEIVEFLNNINPYIGKEEFRKMFYEHLALTKAEALTFLNKD 180 Query: 193 YKQSVQLYDAIEKGALVMADMISTAIIKQFPQMF 226 Y+ VQLYD IEK AL MADMI+ AI+KQFPQ+F Sbjct: 181 YEAGVQLYDKIEKEALEMADMITNAIVKQFPQVF 214 >Q3EPT1.1 Q3EPT1_BACTI Putative uncharacterized protein Length = 269 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 115/213 (53%), Positives = 139/213 (65%), Gaps = 7/213 (3%) Query: 15 FMQYYWRPYSPAQGSPNAMHP-SMPVYAGAAPECFSRAQVNLILHMRTLWEQHVAWTRMV 73 FM YW+ Y +P + S+ Y + E F + +MR+LWEQHVAWTR+ Sbjct: 62 FMYSYWQSYYSPYHNPYVNYDLSVRNYRISKNENFFKG------YMRSLWEQHVAWTRLA 115 Query: 74 IRSIVFDLPDTEVTVARLLQNGPDMGDALKPFYGAAAGDAYGQLIKEHLVIAADLVXXXX 133 I SIVF+LPD VTV RLLQN MG +L+PFYG A Y LIK+HLVIAADLV Sbjct: 116 IISIVFNLPDVNVTVGRLLQNATHMGLSLEPFYGEDAVKKYSALIKDHLVIAADLVKAAK 175 Query: 134 XXXXXXXXXXXXXXXXNGDQIVEFLSRLNPYLPKEDFRKMFYQHLALTKAEAVTLLQKDY 193 NGD+IVEFL+ +NPY+ KE+FRKMFY+HLALTKAEA+T L KDY Sbjct: 176 TGDQNAAAAIEKKWYANGDEIVEFLNNINPYIGKEEFRKMFYEHLALTKAEALTFLNKDY 235 Query: 194 KQSVQLYDAIEKGALVMADMISTAIIKQFPQMF 226 + VQLYD IEK AL MADMI+ AI+KQFPQ+F Sbjct: 236 EAGVQLYDKIEKEALEMADMITNAIVKQFPQVF 268 >C3BJR6.1 C3BJR6_9BACI Putative uncharacterized protein Length = 169 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/168 (61%), Positives = 120/168 (71%) Query: 59 MRTLWEQHVAWTRMVIRSIVFDLPDTEVTVARLLQNGPDMGDALKPFYGAAAGDAYGQLI 118 MR+LWEQHVAWTRM I SI+F+LPD + RLLQN PDMG++LKPFYG A Y LI Sbjct: 1 MRSLWEQHVAWTRMAIISIIFNLPDVNFAITRLLQNAPDMGNSLKPFYGDNAAKKYSNLI 60 Query: 119 KEHLVIAADLVXXXXXXXXXXXXXXXXXXXXNGDQIVEFLSRLNPYLPKEDFRKMFYQHL 178 K+HLVIAADLV N D IVEFLS +NPY+PKE+FRKMFY+HL Sbjct: 61 KDHLVIAADLVKAAKAGNQNAASIAEKKWYANADDIVEFLSSINPYIPKEEFRKMFYEHL 120 Query: 179 ALTKAEAVTLLQKDYKQSVQLYDAIEKGALVMADMISTAIIKQFPQMF 226 ALTK+EAV +L KDY+ VQLYD IEK AL MAD ++ IIKQFPQ+F Sbjct: 121 ALTKSEAVAILSKDYQAGVQLYDKIEKEALEMADALTEGIIKQFPQLF 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.136 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,199,261,903 Number of extensions: 40194601 Number of successful extensions: 89281 Number of sequences better than 1.0e-05: 102 Number of HSP's gapped: 89177 Number of HSP's successfully gapped: 102 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)