BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0022.p (454 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6NRV1.1 A6NRV1_9BACE Putative uncharacterized protein 300 2e-79 A5ZMY2.1 A5ZMY2_9FIRM Putative uncharacterized protein 292 6e-77 C1PQJ8.1 C1PQJ8_ALIAC Pentulose/hexulose kinase 223 3e-56 B7DMY2.1 B7DMY2_9BACL Carbohydrate kinase FGGY 212 7e-53 A9U710.1 A9U710_PHYPA Predicted protein (Fragment) 192 5e-47 >A6NRV1.1 A6NRV1_9BACE Putative uncharacterized protein Length = 433 Score = 300 bits (768), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 173/403 (42%), Positives = 235/403 (58%), Gaps = 5/403 (1%) Query: 20 LEERKVLHRITTENSAQLSGSGKEWERLQDPAVILHLVQGIFEQLMLREPKVQGIGFTGQ 79 ++ +VL T N A L + K WER+QDP IL + + L P +G TGQ Sbjct: 18 MDGAQVLASRTIPNDAFLPAA-KPWERIQDPRKILDRALSLVKGLRTAYPDAACLGVTGQ 76 Query: 80 MHGIVYTDAAGKHVSPLYTWQDGRGSMPYDEFLTHAEKLSKDTGYPVAPGYGLATHFYNL 139 MHGIVY D G+ SPL TWQDGRGS+ T+A +LS+ TG+P++ G+GL TH+YNL Sbjct: 77 MHGIVYLDRFGEPCSPLCTWQDGRGSLSAGGGETYASQLSRLTGHPMSTGFGLCTHYYNL 136 Query: 140 GHGLVPIEAVSLCTIADYAAMRLAESADPVIDSTQAAGLGCYSIPNGVFDLEAIDRSGIG 199 +GLVP EA CTI DY AM LA PV + + AA LG +S+ + FD A+ +GI Sbjct: 137 KNGLVPEEAAVFCTIHDYVAMHLAGRTRPVTEPSDAASLGLFSLADMAFDQSALRAAGIS 196 Query: 200 TELLPRVVQAGTLVGLTRQGVPVYTSLGDNQASFLGSVPCPEETLLLNIGTGSQLSAMLA 259 LLP V + ++G G+PV ++GDNQASFLGS + L+N+GTG Q SA + Sbjct: 197 AGLLPDVA-SDVMLGEGLLGLPVAVAIGDNQASFLGSSGGRRDCALVNLGTGGQFSA-FS 254 Query: 260 GSTGSIEGLEARPYPGGGVLMVGAALSGGKSYALLEKFYRQVIEAYTGQPQEEVYPLLNK 319 + LE RP+PGGG L+VG++L GG++YALLE+ +R+ E GQ Y L + Sbjct: 255 PTLVKAPTLETRPFPGGGFLLVGSSLCGGRAYALLEQLFRKTAELVVGQSLPPCYDALER 314 Query: 320 LLGDGPLATGGLTVNPQFLGTRLNPEARGSVEGITLDNFTPGLVAHAFLQGITDELYAFY 379 +L + + TV F GTR +P+AR S G+ +N TP + + LQG+ DELY Y Sbjct: 315 MLEEFDMPENCPTVCTAFSGTRQDPDARASFTGLDAENLTPLHLTYGLLQGMVDELYEMY 374 Query: 380 RSIEQIGSEVQWTRLIGSGNALRANPALRSKVEARFGLPLTLS 422 R E + L+GSGN LR NP L+S V F + L +S Sbjct: 375 R--EYLSLCPPPALLVGSGNGLRKNPRLQSLVSRTFSMKLNMS 415 >A5ZMY2.1 A5ZMY2_9FIRM Putative uncharacterized protein Length = 408 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 155/396 (39%), Positives = 239/396 (60%), Gaps = 10/396 (2%) Query: 16 LVYDLEERK---VLHRITTENSAQLSGSGKEWERLQDPAVILHLVQGIFEQLMLREPKVQ 72 +V +++ER+ V+ T +N + + S EWER+QD I+ + + ++ + + P Sbjct: 16 VVVEVDERRHSTVIEAKTIQNGSFIRTS-NEWERIQDAEKIIQKAKVVVDEFIDKYPDAH 74 Query: 73 GIGFTGQMHGIVYTDAAGKHVSPLYTWQDGRGSMPYDEF-LTHAEKLSKDTGYPVAPGYG 131 IG TGQMHGIVY +A G+ VSPLYTWQDGRG++ D+ + +++ + Y A GYG Sbjct: 75 NIGLTGQMHGIVYLNAEGRSVSPLYTWQDGRGNICDDKTGKSLLKEIEEKCQYKAASGYG 134 Query: 132 LATHFYNLGHGLVPIEAVSLCTIADYAAMRLAESADPVIDSTQAAGLGCYSIPNGVFDLE 191 L TH YN H LVPIEA + CTI DY M L + P++ + AA G + + F+++ Sbjct: 135 LITHLYNEKHHLVPIEANTFCTIMDYLGMCLTKRTHPLVHVSNAASFGFFDVQKKCFEMD 194 Query: 192 AIDRSGIGTELLPRVVQAGTLVGLTRQGVPVYTSLGDNQASFLGSVPCPEETLLLNIGTG 251 +++ + T LP + + ++G+ + +PV ++GDNQASFLG+ TLL+N+GTG Sbjct: 195 WLNKIRMDTIRLPEICEDMEVLGMYKD-IPVTVAIGDNQASFLGAAGSENNTLLVNMGTG 253 Query: 252 SQLSAMLAGSTGSIEGLEARPYPGGGVLMVGAALSGGKSYALLEKFYRQVIEAYTGQPQE 311 Q+S +L EG+EARP+ GG L+VGA+L GGK+YALLE F+R ++ TGQ Sbjct: 254 GQIS-VLTDQYFETEGIEARPFLGGKYLLVGASLCGGKAYALLENFFRSFMKEATGQDI- 311 Query: 312 EVYPLLNKLLGDG-PLATGGLTVNPQFLGTRLNPEARGSVEGITLDNFTPGLVAHAFLQG 370 +Y +L +L G ++ + V F GTR + RG + I+ DNFTP + + L+G Sbjct: 312 PLYEILGRLAEKGMDASSSSMKVQTTFDGTRTDSGLRGEIRNISSDNFTPEFLTYGVLEG 371 Query: 371 ITDELYAFYRSIEQIGSEVQWTRLIGSGNALRANPA 406 + ELY + IE+ G+E++ ++IGSGN LR N + Sbjct: 372 MIRELYDMFVQIEK-GTEIKIVQMIGSGNGLRKNKS 406 >C1PQJ8.1 C1PQJ8_ALIAC Pentulose/hexulose kinase Length = 441 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 212/409 (51%), Gaps = 5/409 (1%) Query: 16 LVYDLEERKVLHRITTENSAQLSGSGKEWERLQDPAVILHLVQGIFEQLMLREPKVQGIG 75 +VYD +V + + A+L + LQD +L L + + E + V IG Sbjct: 16 VVYDTAASRVAWCQSRPHGAELR-TDDPLASLQDAERMLALAERMVEMGLSEHADVAAIG 74 Query: 76 FTGQMHGIVYTDAAGKHVSPLYTWQDGRGSMPYDEFLTHAEKLSKDTGYPVAPGYGLATH 135 TGQMHG+VY DA VSPL+TWQD RG T AE+LS+ TG V GYGLATH Sbjct: 75 VTGQMHGVVYLDAHLSPVSPLFTWQDRRGGQEAAPGETFAERLSRLTGCRVHIGYGLATH 134 Query: 136 FYNLGHGLVPIEAVSLCTIADYAAMRLAESADPVIDSTQAAGLGCYSIPNGVFDLEAIDR 195 Y HGLVP A L T+ D A RL + P ++ A +G + + G F + Sbjct: 135 AYLAHHGLVPEGASWLATLPDAFAARLVGLSRPRAHASLAHSMGGFDLDQGAFVAGGLPE 194 Query: 196 SGIGTELLPRVVQAGTLVGLTRQGVPVYTSLGDNQASFLGSVPCPEETLLLNIGTGSQLS 255 +GI LP VV ++G R G+PV +LGD+QASFLG+V E +L+NIGTG+Q+S Sbjct: 195 AGIDLSCLPEVVPDLHILGEHR-GIPVAVALGDHQASFLGAVGVEEGGVLVNIGTGAQVS 253 Query: 256 AMLAGSTGSIEGLEARPYPGGGVLMVGAALSGGKSYALLEKFYRQVIEAYTGQPQEEVYP 315 + G G E RP+ G L V A L+GG +YAL+ F+ +V+ + +P Y Sbjct: 254 VCVRGRPELSPGAELRPFVGDLRLAVAATLAGGAAYALVAAFFDRVVRMHGLEPTRSTYD 313 Query: 316 LLNKLLGDGPLATGG--LTVNPQFLGTRLNPEARGSVEGITLDNFTPGLVAHAFLQGITD 373 +L++ + + GG V P F G+R + E VE T P A L G+ + Sbjct: 314 VLDEAIAAWRQSGGGPFPRVRPTFFGSRSSDEDGARVERWTAAGMAPEAFAWGVLSGVAE 373 Query: 374 ELYAFYRSIEQIGSEVQWTRLIGSGNALRANPALRSKVEARFGLPLTLS 422 EL+ + + G + L G+GNALR N LR VEA FG P+ L+ Sbjct: 374 ELHEGFCRLPPCGPDGP-RALAGAGNALRVNRHLRDAVEAVFGRPVQLA 421 >B7DMY2.1 B7DMY2_9BACL Carbohydrate kinase FGGY Length = 441 Score = 212 bits (539), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 195/378 (51%), Gaps = 4/378 (1%) Query: 47 LQDPAVILHLVQGIFEQLMLREPKVQGIGFTGQMHGIVYTDAAGKHVSPLYTWQDGRGSM 106 +QD +L L + E + P V IG TGQMHG+VY DA VSPL+TWQD RG Sbjct: 46 MQDADRMLDLAVSMVEMGLSEHPDVAAIGVTGQMHGVVYLDAHLSPVSPLFTWQDRRGGR 105 Query: 107 PYDEFLTHAEKLSKDTGYPVAPGYGLATHFYNLGHGLVPIEAVSLCTIADYAAMRLAESA 166 T AE+LS+ T V GYGLATH Y HGLVP A L T+ D A RLA + Sbjct: 106 EVAPGETFAERLSRLTRCRVHIGYGLATHAYLAHHGLVPRSASWLATLPDAFAARLAGLS 165 Query: 167 DPVIDSTQAAGLGCYSIPNGVFDLEAIDRSGIGTELLPRVVQAGTLVGLTRQGVPVYTSL 226 P ++ +G + + G F E + +GI LP V ++G R G+PV +L Sbjct: 166 RPRAHASLVHSMGGFDLEQGAFVAEGLREAGIDLARLPEVAPDLHILGEHR-GIPVAVAL 224 Query: 227 GDNQASFLGSVPCPEETLLLNIGTGSQLSAMLAGSTGSIEGLEARPYPGGGVLMVGAALS 286 GD+QASFLG+V L+NIGTG+Q+S + G G E RP+ L V A L+ Sbjct: 225 GDHQASFLGAVGAEAGGALVNIGTGAQVSVCVRGKPKLPHGAELRPFVRDLRLAVVATLA 284 Query: 287 GGKSYALLEKFYRQVIEAYTGQPQEEVYPLLNKLLGDGPLATGG--LTVNPQFLGTRLNP 344 GG +YAL+ F+ +V+ Y + Y +L++ + + GG V P F G+R + Sbjct: 285 GGAAYALVAAFFDRVVRMYGFESARSAYEVLDEAIASWRRSGGGPFPRVRPTFFGSRSSD 344 Query: 345 EARGSVEGITLDNFTPGLVAHAFLQGITDELYAFYRSIEQIGSEVQWTRLIGSGNALRAN 404 E VE T P A L G+ +EL+ + + G + L G+GNALR N Sbjct: 345 EDGARVERWTAAGMAPEAFAWGVLCGVAEELHEGFCRLPSCGPDGPRV-LAGAGNALRVN 403 Query: 405 PALRSKVEARFGLPLTLS 422 LR VEA FG P+ L+ Sbjct: 404 RHLRDAVEAVFGRPVRLA 421 >A9U710.1 A9U710_PHYPA Predicted protein (Fragment) Length = 254 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 131/214 (61%), Gaps = 2/214 (0%) Query: 24 KVLHRITTENSAQLSGSGKEWERLQDPAVILHLVQGIFEQLMLREPKVQGIGFTGQMHGI 83 + + T N A + G WERLQDP I+ V+G+ + P V +G + QMHGI Sbjct: 42 RAVRVATCANDASVRGE-HSWERLQDPQRIMEQVRGLLAECQEEWPDVAAVGISCQMHGI 100 Query: 84 VYTDAAGKHVSPLYTWQDGRGSMPY-DEFLTHAEKLSKDTGYPVAPGYGLATHFYNLGHG 142 +Y + G+ VSPLYTWQDGRG D ++A L + TGYP A GYGL THF+++ +G Sbjct: 101 LYVNGDGQSVSPLYTWQDGRGDERMEDRDASYARYLREITGYPAASGYGLVTHFHHVKNG 160 Query: 143 LVPIEAVSLCTIADYAAMRLAESADPVIDSTQAAGLGCYSIPNGVFDLEAIDRSGIGTEL 202 VP +AV LCTI DY AM+L +A P++D + AAG+G +S FD EA+ R+G+ + Sbjct: 161 NVPKDAVYLCTIGDYVAMQLTGAAKPLMDPSNAAGIGLFSASKRCFDEEALRRAGMNASI 220 Query: 203 LPRVVQAGTLVGLTRQGVPVYTSLGDNQASFLGS 236 LP V Q G T G PV ++GDNQASFLGS Sbjct: 221 LPPVCQGTEPAGRTPDGKPVACAIGDNQASFLGS 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,692,459,401 Number of extensions: 123090899 Number of successful extensions: 286584 Number of sequences better than 1.0e-05: 314 Number of HSP's gapped: 286719 Number of HSP's successfully gapped: 314 Length of query: 454 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 315 Effective length of database: 1,751,175,118 Effective search space: 551620162170 Effective search space used: 551620162170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)