BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0021.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8FW61.1 B8FW61_DESHD Short-chain dehydrogenase/reductase SDR          77   5e-13
Q24XD8.1 Q24XD8_DESHY Putative uncharacterized protein                 77   5e-13
Q8CUW5.1 Q8CUW5_OCEIH 3-oxoacyl-(Acyl carrier protein) reductase       74   6e-12
B1HVV6.1 B1HVV6_LYSSC Probable short-chain type dehydrogenase/re...    72   2e-11
C1P7R2.1 C1P7R2_BACCO Short-chain dehydrogenase/reductase SDR          71   3e-11

>B8FW61.1 B8FW61_DESHD Short-chain dehydrogenase/reductase SDR
          Length = 252

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          MRL +KVA+VTGAASGMGK+IA+LYA EGAKVVVSD+ LE A++  +EI SAG
Sbjct: 1  MRLMNKVAIVTGAASGMGKSIALLYAKEGAKVVVSDLNLEGAHKVAEEITSAG 53


>Q24XD8.1 Q24XD8_DESHY Putative uncharacterized protein
          Length = 252

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          MRL +KVA+VTGAASGMGK+IA+LYA EGAKVVVSD+ LE A++  +EI SAG
Sbjct: 1  MRLMNKVAIVTGAASGMGKSIALLYAKEGAKVVVSDLNLEGAHKVAEEITSAG 53


>Q8CUW5.1 Q8CUW5_OCEIH 3-oxoacyl-(Acyl carrier protein) reductase
          Length = 253

 Score = 73.6 bits (179), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQS 68
          M+L+DKVA+VTGAASGMGKAIA LYASEGAKV+V+D+  E A   V+EI S
Sbjct: 1  MKLKDKVAIVTGAASGMGKAIATLYASEGAKVIVADLNEEGAQSVVEEITS 51


>B1HVV6.1 B1HVV6_LYSSC Probable short-chain type dehydrogenase/reductase
          blr2146 EC=1.-.-.-
          Length = 252

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 43/53 (81%)

Query: 18 MRLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          MRL  KVA+VTGAASGMGKAIA +YA EGAKVVVSD+ +E A   V+ IQ+AG
Sbjct: 1  MRLEGKVAIVTGAASGMGKAIAEVYAKEGAKVVVSDLNIEGAQAVVEGIQAAG 53


>C1P7R2.1 C1P7R2_BACCO Short-chain dehydrogenase/reductase SDR
          Length = 253

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 42/52 (80%)

Query: 19 RLRDKVAVVTGAASGMGKAIAILYASEGAKVVVSDIKLEAANETVQEIQSAG 70
          +L  KVAVVTGAASGMGKAIA LYA EGAKVV SD+ LE   +TV EI++AG
Sbjct: 3  KLDGKVAVVTGAASGMGKAIAALYAKEGAKVVASDLNLEGVQQTVAEIEAAG 54


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 413,932,839
Number of extensions: 12272210
Number of successful extensions: 82670
Number of sequences better than 1.0e-05: 538
Number of HSP's gapped: 83400
Number of HSP's successfully gapped: 538
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)