BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0019.p
         (174 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D8H4.1 B1D8H4_9BACL VanZ family protein                             156   6e-37
Q4U1V4.1 Q4U1V4_9BACL VanZ                                            114   3e-24
B3K6C5.1 B3K6C5_9BACI Putative uncharacterized protein                110   4e-23
Q4U1W2.1 Q4U1W2_PANTH VanZ (Fragment)                                 107   5e-22
A7VJ33.1 A7VJ33_9CLOT Putative uncharacterized protein                 81   4e-14

>B1D8H4.1 B1D8H4_9BACL VanZ family protein
          Length = 164

 Score =  156 bits (395), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 101/142 (71%), Gaps = 3/142 (2%)

Query: 26  KIILFKYAPVDIAFLWRQLHSVLEHPARIRYGLAFANFTPFVSISRNLHQLSNPHDFVNL 85
           K+ILFK++ V+IAFLW++LH  LE+P  +RYGL  ANFTPF SIS+NLH LS  H+ VNL
Sbjct: 23  KVILFKFSSVNIAFLWQKLHWTLEYPEYMRYGLERANFTPFKSISQNLHGLSERHEQVNL 82

Query: 86  FGNIALFVPLGIFIRLLAKG---GLFTALVLSFGISFSLEGTQLLLSMGSFDVDDLILNV 142
           FGNIA+F+P GI + L  K        A  LSFG+S +LE +QL+ SMGSFDVDDLILN 
Sbjct: 83  FGNIAIFLPCGILVGLWTKHDSISFLGAAALSFGLSLALECSQLVFSMGSFDVDDLILNG 142

Query: 143 FGGLLGYIICLKNPRKHGKTQL 164
           FGGLLG+ I     R+    Q+
Sbjct: 143 FGGLLGWWILFVVRREKALAQV 164


>Q4U1V4.1 Q4U1V4_9BACL VanZ
          Length = 159

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 18  AVYLYVLIKIILFKYAPVDIAFLWRQLHSVLEHPARIRYGLAFANFTPFVSISRNLHQLS 77
           A Y+Y L KII+ K+ P D+ FLW +L     +P  I   L   N  P   ISR    +S
Sbjct: 17  ASYMYALFKIIVLKFGPTDVEFLWVRLMRNSTNPECIAARLHAGNLIPLKEISRASDSMS 76

Query: 78  NPHDFVNLFGNIALFVPLGIFIRLLAKGGLFT---ALVLSFGISFSLEGTQLLLSMGSFD 134
             H  +NL GN+ +FVPLGIF+ +LAK G  T   +   S G+S  LE TQ+L S+G+FD
Sbjct: 77  G-HSLLNLLGNVGIFVPLGIFLGVLAKSGKLTLAGSFWSSLGVSLVLECTQVLFSIGTFD 135

Query: 135 VDDLILNVFGGLLGYII 151
           VDDLILN  GG +G+++
Sbjct: 136 VDDLILNSIGGSIGFVV 152


>B3K6C5.1 B3K6C5_9BACI Putative uncharacterized protein
          Length = 132

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 76/101 (75%)

Query: 5   MKRLDRKLVILGAAVYLYVLIKIILFKYAPVDIAFLWRQLHSVLEHPARIRYGLAFANFT 64
           MK   + +V+L  A+Y+YVL+KIILFK+  V+I+FLW+QL   +++P  ++  L FAN T
Sbjct: 1   MKLTPKWMVLLLYALYVYVLVKIILFKFGDVNISFLWQQLQRSIDNPEHMQNRLQFANLT 60

Query: 65  PFVSISRNLHQLSNPHDFVNLFGNIALFVPLGIFIRLLAKG 105
           PF SI +N+ +LS+PHD +NLFGNIA+F+P GIF+ +L K 
Sbjct: 61  PFKSIHQNMKRLSSPHDVINLFGNIAIFIPNGIFVSVLLKN 101


>Q4U1W2.1 Q4U1W2_PANTH VanZ (Fragment)
          Length = 143

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 78/132 (59%), Gaps = 5/132 (3%)

Query: 20  YLYVLIKIILFKYAPVDIAFLWRQLHSVLEHPARIRYGLAFANFTPFVSISRNLHQLSNP 79
           Y+Y L KII+ K+ P  + FLW +L     +P  I   L   N  P   ISR    +S  
Sbjct: 10  YMYALFKIIVLKFGPTVVEFLWVRLMRNSTNPECIAARLHAGNLIPLKEISRASDSMSG- 68

Query: 80  HDFVNLFGNIALFVPLGIFIRLLAKGGLFTALVLSFGISFSLEGTQLLLSMGSFDVDDLI 139
           H  +NLFGN+ +FVPLGIF+ +LAK G  T      G S  LE TQ+L S+G FDVDDLI
Sbjct: 69  HSLLNLFGNVGIFVPLGIFLGVLAKSGKLTLA----GSSLVLECTQVLFSIGKFDVDDLI 124

Query: 140 LNVFGGLLGYII 151
           LN  GG +G+++
Sbjct: 125 LNSTGGSIGFVV 136


>A7VJ33.1 A7VJ33_9CLOT Putative uncharacterized protein
          Length = 126

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 7/113 (6%)

Query: 62  NFTPFVSISRNLHQ---LSNPHDFVNLFGNIALFVPLGIFIRLL--AKGGLFTALVLSFG 116
           N TPF+ I R +     ++     +NL GN+  FVP G+ IR +   K G FTA + +F 
Sbjct: 14  NLTPFLEIKRFVKYRSYMTTTSVMLNLVGNVLAFVPFGMLIRWVRGKKTGFFTATLAAFA 73

Query: 117 ISFSLEGTQLLLSMGSFDVDDLILNVFGGLLGYII--CLKNPRKHGKTQLQQQ 167
            S S+E  QL+  +G FDVDD+I+N FGG++GYII   L    +  + + ++Q
Sbjct: 74  FSLSIELVQLITKLGVFDVDDIIMNTFGGMIGYIIYYILARFDRKRRKEFEKQ 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.147    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 983,941,792
Number of extensions: 38644092
Number of successful extensions: 113997
Number of sequences better than 1.0e-05: 165
Number of HSP's gapped: 114141
Number of HSP's successfully gapped: 165
Length of query: 174
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 48
Effective length of database: 1,873,648,313
Effective search space: 89935119024
Effective search space used: 89935119024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)