BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0018.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q4U1W3.1 Q4U1W3_PANTH VanY 249 9e-65 Q0WYK4.1 Q0WYK4_ENTFA VanY protein 246 8e-64 A1JV20.1 A1JV20_ENTFC VanY protein EC=3.4.16.4 EC=3.4.16.4 246 8e-64 P37711.1 VANY_ENTFC D-alanyl-D-alanine carboxypeptidase EC=3.4.16.4 246 8e-64 Q7WU30.1 Q7WU30_STAAU D-alanyl-D-alanine carboxypeptidase VanY 246 9e-64 >Q4U1W3.1 Q4U1W3_PANTH VanY Length = 294 Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 115/192 (59%), Positives = 147/192 (76%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K+G +F I+SGYRD +EQ LY+E GADYALPAGY Sbjct: 97 LLDTNIYMSKGIAQKFSEMVNDAVKEGVSHFIINSGYRDFDEQSVLYQEMGADYALPAGY 156 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKWL+ NAW YGFILRYP+DKT++TGI+YE WH RYV Sbjct: 157 SEHNSGLSLDVGSSLTKMERAPEGKWLKENAWKYGFILRYPKDKTDVTGIQYEPWHIRYV 216 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 G PHS +MKEKN LEEY+ LK++K T+ + Y + Y P SQ ++HVPA Y + Sbjct: 217 GFPHSAIMKEKNFALEEYMDFLKEQKSITTTIDHQVYKIFYYPISQNTTIHVPANGQYEI 276 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 277 SGNNMDGVIVTV 288 >Q0WYK4.1 Q0WYK4_ENTFA VanY protein Length = 303 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 101 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 160 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 161 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 220 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 221 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 280 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 281 SGNNIDGVIVTV 292 >A1JV20.1 A1JV20_ENTFC VanY protein EC=3.4.16.4 EC=3.4.16.4 Length = 303 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 101 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 160 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 161 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 220 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 221 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 280 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 281 SGNNIDGVIVTV 292 >P37711.1 VANY_ENTFC D-alanyl-D-alanine carboxypeptidase EC=3.4.16.4 Length = 303 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 101 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 160 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 161 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 220 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 221 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 280 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 281 SGNNIDGVIVTV 292 >Q7WU30.1 Q7WU30_STAAU D-alanyl-D-alanine carboxypeptidase VanY Length = 296 Score = 246 bits (628), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 114/192 (59%), Positives = 145/192 (75%) Query: 1 LLDRSIELSKRVTERFSELPAAAAKDGAENFRISSGYRDQEEQGRLYKEKGADYALPAGY 60 LLD +I +SK + ++FSE+ A K G +F I+SGYRD +EQ LY+E GA+YALPAGY Sbjct: 94 LLDSNIYMSKEIAQKFSEMVNDAVKGGVSHFIINSGYRDFDEQSVLYQEMGAEYALPAGY 153 Query: 61 SEHNTGLSLDIGSSLGEIKGSPEGKWLRANAWNYGFILRYPEDKTNITGIKYEAWHFRYV 120 SEHN+GLSLD+GSSL +++ +PEGKW+ NAW YGFILRYPEDKT +TGI+YE WH RYV Sbjct: 154 SEHNSGLSLDVGSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQYEPWHIRYV 213 Query: 121 GLPHSLVMKEKNMVLEEYLADLKQRKRQQITVADRKYLMLYVPASQLGSVHVPAGHPYTV 180 GLPHS +MKEKN VLEEY+ LK+ K ++V KY + Y P ++ ++HVP Y + Sbjct: 214 GLPHSAIMKEKNFVLEEYMDYLKEEKTISVSVNGEKYEIFYYPVTKNTTIHVPTNLRYEI 273 Query: 181 SGNNSDGVIVTV 192 SGNN DGVIVTV Sbjct: 274 SGNNIDGVIVTV 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,278,138,272 Number of extensions: 55855469 Number of successful extensions: 99966 Number of sequences better than 1.0e-05: 706 Number of HSP's gapped: 99336 Number of HSP's successfully gapped: 706 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)