BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0013.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6U3.1 B3K6U3_9BACI Putative uncharacterized protein                 83   1e-14
Q2B6C2.1 Q2B6C2_9BACI YqkB                                             63   9e-09
Q72YU9.1 Q72YU9_BACC1 Putative uncharacterized protein                 59   2e-07
Q4MVE4.1 Q4MVE4_BACCE YqkB-like protein                                59   2e-07
C2QZR5.1 C2QZR5_BACCE Putative uncharacterized protein                 59   2e-07

>B3K6U3.1 B3K6U3_9BACI Putative uncharacterized protein
          Length = 109

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNE- 74
           M IQL P    +L + L  +PG ++L YDTE CGC  NGV  ++IVD P   D+ ++ + 
Sbjct: 1   MNIQLTPQAELKLKDKLGDKPGAIRLIYDTEGCGCAVNGVPGLRIVDEPTPDDLAVETDS 60

Query: 75  PYTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRVKDLR 122
           P TF+ +R+Q   F+  M L AD    +++L S    + +NI+V D R
Sbjct: 61  PVTFIVNRKQAVFFEEKMKLDADPAAYAFRLDSSGQHYGTNIQVVDTR 108


>Q2B6C2.1 Q2B6C2_9BACI YqkB
          Length = 130

 Score = 62.8 bits (151), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 10  QIKGENCEMQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNAT 67
           + K  +  M+I +    + +L E   G+ G+LKL YDTE CGC  +GV  + +VD  ++ 
Sbjct: 15  ETKAGDFPMKIAVTRTAQEKLKEKTAGKEGYLKLKYDTEGCGCVVSGVSALWLVDGVDSG 74

Query: 68  DIVIQNEPYTFLCDRQQESLFDSSMTLAADENYPSYKLTSPS 109
           D  I  E  +   ++ +E  FD SMT+   +    ++L SP+
Sbjct: 75  DREISTEAGSIYIEKSKEVFFDESMTIDYSDQANCFQLKSPN 116


>Q72YU9.1 Q72YU9_BACC1 Putative uncharacterized protein
          Length = 107

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIVDTIPNEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESSK 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
           ++F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  FSFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


>Q4MVE4.1 Q4MVE4_BACCE YqkB-like protein
          Length = 107

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIMDTIPNEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESSH 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
           ++F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  FSFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


>C2QZR5.1 C2QZR5_BACCE Putative uncharacterized protein
          Length = 107

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 18  MQIQLDPLTRRRLGESLDGRPGFLKLFYDTEDCGC--NGVLVIQIVDSPNATDIVIQNEP 75
           M + +     +++ +++     ++KLFYD E CGC  +G++ +  V   +  D+ I++  
Sbjct: 1   MYVTVTEAAYKKIMDTIPNEAKYIKLFYDNEGCGCVMSGIIDLVAVAEKDERDVDIESSH 60

Query: 76  YTFLCDRQQESLFDSSMTLAADENYPSYKLTSPSSLFSSNIRV 118
           ++F+ DR +    D  +T+   E   +++L SPS  ++ N+++
Sbjct: 61  FSFIADRTKLVFMDDKLTVDWHEGGGTFQLKSPSQFYNPNMKL 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 675,599,729
Number of extensions: 24204190
Number of successful extensions: 44485
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 44494
Number of HSP's successfully gapped: 76
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)