BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0012.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DKV7.1 B1DKV7_9BACL Uroporphyrin-III C-methyltransferase            108   2e-22
B3K616.1 B3K616_9BACI Uroporphyrin-III C-methyltransferase             99   1e-19
C2ZLZ7.1 C2ZLZ7_BACCE Uroporphyrinogen-III C-methyltransferase         98   2e-19
C2Z5D1.1 C2Z5D1_BACCE Uroporphyrinogen-III C-methyltransferase         98   2e-19
Q81T44.1 Q81T44_BACAN Uroporphyrin-III C-methyltransferase             95   2e-18

>B1DKV7.1 B1DKV7_9BACL Uroporphyrin-III C-methyltransferase
          Length = 258

 Score =  108 bits (269), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           VDTL IYMGVS LA IRE+LLKHGK  ATP A+IE GTT ++R +TGTL +I +LA + K
Sbjct: 168 VDTLAIYMGVSQLAVIREELLKHGKAAATPVAIIERGTTSKQRVITGTLADIHKLAVSFK 227

Query: 61  ISNPAIIIIGESVTVRDQLLSLEKAVRSQI 90
           + NPA+II+GE V VR+QLL  E+   + +
Sbjct: 228 VVNPALIIVGEVVRVREQLLLAEQQAEAWV 257


>B3K616.1 B3K616_9BACI Uroporphyrin-III C-methyltransferase
          Length = 96

 Score = 98.6 bits (244), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 63/91 (69%)

Query: 1  VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
          VDTL++YMGVS +  I ++++ HGK P TPAA++E GT   ER  TGTLG I R++  M 
Sbjct: 6  VDTLVVYMGVSRMDGICKEMIAHGKQPWTPAAIVEQGTRAEERIFTGTLGTIYRISHRMN 65

Query: 61 ISNPAIIIIGESVTVRDQLLSLEKAVRSQIG 91
          + NPA++IIGE V VR+QLL L    + + G
Sbjct: 66 VKNPALLIIGEVVRVREQLLKLAAEAQEKTG 96


>C2ZLZ7.1 C2ZLZ7_BACCE Uroporphyrinogen-III C-methyltransferase
          Length = 259

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 61/84 (72%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           VDTL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R VTGTLG I  +A   K
Sbjct: 164 VDTLAVYMGVSNLPYICEQLIKHGKDLSTPAAIIEWGTTSMQRTVTGTLGTIIDVAKKEK 223

Query: 61  ISNPAIIIIGESVTVRDQLLSLEK 84
           I NP++IIIGE V  R+++   EK
Sbjct: 224 IQNPSMIIIGEVVRFREKIHWFEK 247


>C2Z5D1.1 C2Z5D1_BACCE Uroporphyrinogen-III C-methyltransferase
          Length = 259

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 61/84 (72%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           VDTL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R VTGTLG I  +A   K
Sbjct: 164 VDTLAVYMGVSNLPYICEQLIKHGKDLSTPAAIIEWGTTSMQRTVTGTLGTIIDVAKKEK 223

Query: 61  ISNPAIIIIGESVTVRDQLLSLEK 84
           I NP++IIIGE V  R+++   EK
Sbjct: 224 IQNPSMIIIGEVVRFREKIHWFEK 247


>Q81T44.1 Q81T44_BACAN Uroporphyrin-III C-methyltransferase
          Length = 258

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 61/88 (69%)

Query: 1   VDTLIIYMGVSTLAEIREQLLKHGKDPATPAALIENGTTVRERAVTGTLGNIDRLAAAMK 60
           V+TL +YMGVS L  I EQL+KHGKD +TPAA+IE GTT  +R V GTLG I  +A   +
Sbjct: 163 VETLAVYMGVSNLPYICEQLMKHGKDKSTPAAIIERGTTSMQRTVVGTLGTIVDVAKKEQ 222

Query: 61  ISNPAIIIIGESVTVRDQLLSLEKAVRS 88
           I NP++I+IGE V  R+++   EK   S
Sbjct: 223 IQNPSMIVIGEVVRFREKIHWFEKQTES 250


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 464,277,624
Number of extensions: 15154686
Number of successful extensions: 54862
Number of sequences better than 1.0e-05: 1034
Number of HSP's gapped: 54728
Number of HSP's successfully gapped: 1034
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)