BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0010.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K619.1 B3K619_9BACI Nitrite reductase (NAD(P)H), small subunit      156   5e-37
B1DBZ5.1 B1DBZ5_9BACL Nitrite reductase (NAD(P)H), small subunit      140   3e-32
A7Z173.1 A7Z173_BACA2 NasE EC=1.7.1.4                                 114   3e-24
P42436.1 NASE_BACSU Assimilatory nitrite reductase [NAD(P)H] sma...   110   4e-23
A7GKB6.1 A7GKB6_BACCN Nitrite reductase (NAD(P)H), small subunit      109   7e-23

>B3K619.1 B3K619_9BACI Nitrite reductase (NAD(P)H), small subunit
          Length = 106

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 87/105 (82%)

Query: 3   MTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSK 62
           M K+ VG V +ID KGSR + +G  EIALFRLSDG +LAVENKCPHKGG LSEGMVCG +
Sbjct: 1   MAKLHVGYVNEIDPKGSRTIEIGGTEIALFRLSDGNILAVENKCPHKGGKLSEGMVCGKQ 60

Query: 63  VHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYLSERS 107
           VHCPLHDW+IDL +G VQEPD GHV TY++EVD ++G+IYL +R+
Sbjct: 61  VHCPLHDWKIDLCSGQVQEPDTGHVNTYQIEVDPASGAIYLLDRT 105


>B1DBZ5.1 B1DBZ5_9BACL Nitrite reductase (NAD(P)H), small subunit
          Length = 104

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 83/102 (81%)

Query: 3   MTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSK 62
           +TK+LV K+++ID+ GSR V++ + ++A+FRL+DG V AVENKCPHKGG LSEGMVCG+ 
Sbjct: 2   VTKVLVAKISEIDVLGSRTVKIDNTDVAIFRLADGSVKAVENKCPHKGGRLSEGMVCGTA 61

Query: 63  VHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYLS 104
           VHCPLHDW+IDL +G V EPD G + T+E E+D  +G IY++
Sbjct: 62  VHCPLHDWKIDLKSGRVHEPDDGCIKTFETEIDPGSGEIYIT 103


>A7Z173.1 A7Z173_BACA2 NasE EC=1.7.1.4
          Length = 106

 Score =  114 bits (284), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 2   EMTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGS 61
           +MTK+ +GKV ++  +  + V + D E+A+F+LSDG V AVEN+CPHKGG L+EG+V G 
Sbjct: 5   DMTKVCIGKVNELPEELGKTVYIEDKELAVFKLSDGSVRAVENRCPHKGGVLAEGIVSGE 64

Query: 62  KVHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYL 103
            V CP+HDW+I L  G VQEPDHG V TYE  ++  N  +YL
Sbjct: 65  YVFCPMHDWKISLEDGKVQEPDHGCVKTYETLIEGEN--VYL 104


>P42436.1 NASE_BACSU Assimilatory nitrite reductase [NAD(P)H] small subunit
          EC=1.7.1.4
          Length = 106

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 70/94 (74%)

Query: 2  EMTKMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGS 61
          ++TK+ +GK+ ++  +  + V + D E+A+F+LSDG + A+EN+CPHKGG L+EG+V G 
Sbjct: 5  DVTKVCIGKIEELPEQLGKTVYIEDKELAVFKLSDGSIRAIENRCPHKGGVLAEGIVSGQ 64

Query: 62 KVHCPLHDWRIDLHTGVVQEPDHGHVVTYEVEVD 95
           V CP+HDW+I L  G+VQEPDHG V TYE  ++
Sbjct: 65 YVFCPMHDWKISLEDGIVQEPDHGCVKTYETLIE 98


>A7GKB6.1 A7GKB6_BACCN Nitrite reductase (NAD(P)H), small subunit
          Length = 105

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 72/99 (72%)

Query: 5   KMLVGKVTDIDIKGSRIVRVGDHEIALFRLSDGEVLAVENKCPHKGGALSEGMVCGSKVH 64
           K+ + +  D+ ++  + VR+GD  IALFRL++G++ AVEN+CPHK G L+EG+V G  V 
Sbjct: 7   KIKIMRAKDLPMQIGKEVRIGDKSIALFRLANGDIRAVENRCPHKNGPLAEGIVSGEFVF 66

Query: 65  CPLHDWRIDLHTGVVQEPDHGHVVTYEVEVDQSNGSIYL 103
           CPLHDW+I L TG VQ+PD G + T++VEV Q +  IYL
Sbjct: 67  CPLHDWKISLLTGEVQKPDDGCIQTHKVEVIQDDIYIYL 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 643,649,615
Number of extensions: 23295596
Number of successful extensions: 50137
Number of sequences better than 1.0e-05: 341
Number of HSP's gapped: 50435
Number of HSP's successfully gapped: 341
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)