BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0009.p (809 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K620.1 B3K620_9BACI Nitrite reductase (NAD(P)H), large subunit 1207 0.0 B1DBZ4.1 B1DBZ4_9BACL Nitrite reductase (NAD(P)H), large subunit 1190 0.0 Q65NC4.1 Q65NC4_BACLD NasD 989 0.0 A7Z174.1 A7Z174_BACA2 NasD EC=1.7.1.4 981 0.0 P42435.1 NASD_BACSU Nitrite reductase [NAD(P)H] EC=1.7.1.4 974 0.0 >B3K620.1 B3K620_9BACI Nitrite reductase (NAD(P)H), large subunit Length = 810 Score = 1207 bits (3123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/806 (71%), Positives = 667/806 (82%), Gaps = 1/806 (0%) Query: 5 RKKLVLVGNGMAGVRAIEHLLKLSPEAYEITIFGSEPHPNYNRIMLSSVLAGGSSMEEII 64 +KKLV++GNGMAGVRAIEHL+KL+PEAYEITIFG+EPHPNYNRIMLSSVLAGG+ ++EII Sbjct: 3 KKKLVMIGNGMAGVRAIEHLIKLAPEAYEITIFGAEPHPNYNRIMLSSVLAGGTDLKEII 62 Query: 65 INDLEWYHSHGIRLYMGHTITSIDTAKRKVYSDKGIVMPYDELILATGSNPFMLPLPGAE 124 IND +WY + I+L+ GHT+ IDT RKV+S++G V PYD LI+ATGSNPFMLPLPGA+ Sbjct: 63 INDWDWYKENRIQLHAGHTVNRIDTRHRKVFSEQGAVAPYDALIIATGSNPFMLPLPGAD 122 Query: 125 KEGVIAFRDIKDCQIMQETSQSYRKAVVIXXXXXXXXXXXXXXXXXMEVSVVHIHPYIME 184 KEGVIAFRDI+DC+ M +TSQ Y+KAVVI M+VSVVH++PY+ME Sbjct: 123 KEGVIAFRDIQDCETMVKTSQQYKKAVVIGGGLLGLEAARGLLHLGMDVSVVHLNPYLME 182 Query: 185 RQLDEPASVMLRKELEEQGMKFLLNKQSEAILGKKRVKGLLFADGEIADADLIVMAVGIK 244 RQLDE A+ ML++ELE QGM FLLNK SE+I G+KRV+ L F DG + DLIVMAVGIK Sbjct: 183 RQLDETAAKMLQRELETQGMTFLLNKNSESISGRKRVRALHFTDGSSVETDLIVMAVGIK 242 Query: 245 PNVELAQKSGVQTNRGIIVNDYMETNIPGIYAVGECAEHRGIAYGLVAPLYEQGAVLAKR 304 PNV LAQ SG++ NRGI+VNDYM TN+PG+YAVGECAEHRGIAYGLVAPLYEQGAVLAK Sbjct: 243 PNVSLAQSSGIEVNRGIVVNDYMATNVPGVYAVGECAEHRGIAYGLVAPLYEQGAVLAKH 302 Query: 305 LAGVPTDGYPGSVTSTKLKVSGVDVFSAGQFTERPGTRSLRYQDEIEGIYKKLVIQDDQL 364 LAGV T GY GSVTSTKLKVSGVDVFSAG F + GTRS+RYQDE+EG+YKK+V+++D+L Sbjct: 303 LAGVETSGYGGSVTSTKLKVSGVDVFSAGHFADPEGTRSMRYQDEVEGVYKKIVVREDRL 362 Query: 365 VGAVLFGDTGDGAQLFSMXXXXXXXXXXXXXXXXXVSSDALASPKGSRLEGMADDEIICG 424 +GAV+FGDTGDG +LFS+ + +A RL +ADDEIICG Sbjct: 363 IGAVMFGDTGDGPKLFSLMKSGESIKGREKELLLGFAPNAGVVSPEQRLAQLADDEIICG 422 Query: 425 CNGVSKGAIAEAIQSGGCTSVGQIKACTKASASCGGCKPLVEGLLQLYAGDNV-VTVKEG 483 CNGVSK AI +AI + C +V +KACTKAS SCGGCKPLVEGL+QLYAGD VKEG Sbjct: 423 CNGVSKDAIKDAILTKNCNTVASVKACTKASGSCGGCKPLVEGLVQLYAGDAAGEPVKEG 482 Query: 484 ICGCTTLGRDEIVAEIRRMELKTVKEVMNVLEWNTEEGCAKCRPSLNYYLGMLWPEEYID 543 ICGCT+LGRDEI+ EI R+ L TVKEVMNVL W+ EGC+KCRPSLNYYLGML+PE Y+D Sbjct: 483 ICGCTSLGRDEIITEITRLGLGTVKEVMNVLGWDNPEGCSKCRPSLNYYLGMLFPESYVD 542 Query: 544 EKESRITNERYHANIQKDGTYSVVPRIYGGVTSPAELMKIAEVAAKFEVPLVKFTGGQRL 603 EKESR TNERYHANIQKDGTYSVVPRIYGGVTSP+EL KIAE+A KF+VP+VK TGGQR+ Sbjct: 543 EKESRFTNERYHANIQKDGTYSVVPRIYGGVTSPSELKKIAEIAEKFDVPMVKITGGQRI 602 Query: 604 DLLGVKKEDLPKMWEELDMPSGHAYGKTLRTVKTCVGSTFCRFGTQDAMGMGIRLEKAFE 663 DLLGVKKEDLP+MWEELDMPSG+AYGK LRTVKTCVGSTFCRFGTQD++GMG+RLEK FE Sbjct: 603 DLLGVKKEDLPRMWEELDMPSGYAYGKALRTVKTCVGSTFCRFGTQDSIGMGVRLEKEFE 662 Query: 664 RLNTPGKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHIGGNGGVHVRATDLLCVVKTD 723 RL+TP KVKLAVSGCPRNCAEATIKDFGVVAIDGGWELH+GGNGGVHVRAT+LLCVVKT+ Sbjct: 663 RLSTPAKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHVGGNGGVHVRATELLCVVKTE 722 Query: 724 DEVIEWASAFLQYYREQAGWNERTAQWVERVGLDSIKEVLEVRENRLALQERIHTALSVT 783 DEV+EWA AF+QYYRE A WNERT+ W+ERVGLD +K+ LE +E+R AL RI ALS Sbjct: 723 DEVVEWAGAFIQYYRENAQWNERTSVWIERVGLDHVKKALEKKEDRAALVSRIKLALSKQ 782 Query: 784 TDPWKQIVNEPELRKNFEQLSEMKTV 809 DPWK+I ++ LRKNF L + + V Sbjct: 783 KDPWKEITSDSGLRKNFVPLPDAEAV 808 >B1DBZ4.1 B1DBZ4_9BACL Nitrite reductase (NAD(P)H), large subunit Length = 812 Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/807 (70%), Positives = 662/807 (82%), Gaps = 2/807 (0%) Query: 5 RKKLVLVGNGMAGVRAIEHLLKLSPEAYEITIFGSEPHPNYNRIMLSSVLAGGSSMEEII 64 RKKLVLVGNGMAGVRAIEHL+KL+P+AY ITIFGSEP+PNYNRIMLSSVLAGG+ M++II Sbjct: 4 RKKLVLVGNGMAGVRAIEHLIKLAPDAYSITIFGSEPYPNYNRIMLSSVLAGGTDMKDII 63 Query: 65 INDLEWYHSHGIRLYMGHTITSIDTAKRKVYSDKGIVMPYDELILATGSNPFMLPLPGAE 124 IND +WY + I+L+ GHT+T IDT ++KVYS +G+ YD L++ATGSNPFMLPLPGA Sbjct: 64 INDWDWYADNHIQLHAGHTVTKIDTKRKKVYSQQGVEADYDVLVMATGSNPFMLPLPGAN 123 Query: 125 KEGVIAFRDIKDCQIMQETSQSYRKAVVIXXXXXXXXXXXXXXXXXMEVSVVHIHPYIME 184 KEGVI FRDI+D +IMQETSQ Y+KA VI M+V VVHI+ +M Sbjct: 124 KEGVIGFRDIRDTEIMQETSQKYKKAAVIGGGLLGLEAARGLLNLGMDVHVVHINGILMN 183 Query: 185 RQLDEPASVMLRKELEEQGMKFLLNKQSEAILGKKRVKGLLFADGEIADADLIVMAVGIK 244 R+LDEPA+ ML++ELE QGMKFLL+KQS +I G++RVK L FADG +ADLIVMAVGI+ Sbjct: 184 RELDEPAARMLQRELEAQGMKFLLSKQSASITGRRRVKALQFADGSEVEADLIVMAVGIR 243 Query: 245 PNVELAQKSGVQTNRGIIVNDYMETNIPGIYAVGECAEHRGIAYGLVAPLYEQGAVLAKR 304 P+VELA+ SG++ RGIIV+D+M TNIP +YAVGECAEHRGIAYGLVAPLYEQGAVLAK Sbjct: 244 PSVELAKASGIEVGRGIIVDDFMRTNIPDVYAVGECAEHRGIAYGLVAPLYEQGAVLAKL 303 Query: 305 LAGVPTDGYPGSVTSTKLKVSGVDVFSAGQFTERPGTRSLRYQDEIEGIYKKLVIQDDQL 364 LAGV T+GY GSVTSTKLKVSGVDVFSAGQF E PGTR+LR QD++ G YKK+VI++ +L Sbjct: 304 LAGVETEGYQGSVTSTKLKVSGVDVFSAGQFNEGPGTRALRIQDDVAGTYKKIVIKNGKL 363 Query: 365 VGAVLFGDTGDGAQLFSMXXXXXXXXXXXXXXXXXVSSDALA-SPKGSRLEGMADDEIIC 423 VGAVLFGDT DGA+LFS+ S A S RL M DEI+C Sbjct: 364 VGAVLFGDTTDGAELFSIMKKGESIEGKEKELLLGFSPAAGGGSSPLDRLAAMPGDEIVC 423 Query: 424 GCNGVSKGAIAEAIQSGGCTSVGQIKACTKASASCGGCKPLVEGLLQLYAGDNV-VTVKE 482 GCNGVSKGAIA+A+Q+ GC ++ +K CTKASASCGGCKP VEGLL+LYAGD V VKE Sbjct: 424 GCNGVSKGAIADAVQNKGCNTLASLKGCTKASASCGGCKPQVEGLLKLYAGDAAGVPVKE 483 Query: 483 GICGCTTLGRDEIVAEIRRMELKTVKEVMNVLEWNTEEGCAKCRPSLNYYLGMLWPEEYI 542 GICGCT RDEIVA I+ M L TVKEVMNVL W E GC KCRPSLNYYLGMLWP EY Sbjct: 484 GICGCTEHSRDEIVAAIKEMRLMTVKEVMNVLGWKNEGGCTKCRPSLNYYLGMLWPGEYE 543 Query: 543 DEKESRITNERYHANIQKDGTYSVVPRIYGGVTSPAELMKIAEVAAKFEVPLVKFTGGQR 602 D+KESR TNERYHANIQKDGTYSVVPR+YGGVT+PA+L+KIA VA K+EVP+VKFTGGQR Sbjct: 544 DQKESRFTNERYHANIQKDGTYSVVPRVYGGVTTPADLIKIATVAEKYEVPMVKFTGGQR 603 Query: 603 LDLLGVKKEDLPKMWEELDMPSGHAYGKTLRTVKTCVGSTFCRFGTQDAMGMGIRLEKAF 662 LDLLGVKKEDLPK+WEELDMPSGHAYGKTLRTVKTCVG+TFCRFGTQD++ MGIR+EKA+ Sbjct: 604 LDLLGVKKEDLPKIWEELDMPSGHAYGKTLRTVKTCVGNTFCRFGTQDSIAMGIRMEKAY 663 Query: 663 ERLNTPGKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHIGGNGGVHVRATDLLCVVKT 722 ER+ P KVKLAVSGCPRNCAEATIKD G+VAIDG WELH+GGNGG+HVRAT+LLC VKT Sbjct: 664 ERMTAPAKVKLAVSGCPRNCAEATIKDLGIVAIDGAWELHVGGNGGIHVRATELLCTVKT 723 Query: 723 DDEVIEWASAFLQYYREQAGWNERTAQWVERVGLDSIKEVLEVRENRLALQERIHTALSV 782 +DEV+EW+SA+LQYYRE A WNERTAQW+ERVGLD +K+ LE RE+RLAL ER+ LS Sbjct: 724 EDEVMEWSSAYLQYYRENATWNERTAQWIERVGLDHVKKALEKREDRLALVERLEKTLSY 783 Query: 783 TTDPWKQIVNEPELRKNFEQLSEMKTV 809 TTDPWK+I+ ELRKNFEQLS + V Sbjct: 784 TTDPWKEIIENKELRKNFEQLSTPQPV 810 >Q65NC4.1 Q65NC4_BACLD NasD Length = 806 Score = 989 bits (2557), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/805 (60%), Positives = 596/805 (74%), Gaps = 10/805 (1%) Query: 5 RKKLVLVGNGMAGVRAIEHLLKLSPEAYEITIFGSEPHPNYNRIMLSSVLAGGSSMEEII 64 +K+LVLVGNGMAGVRAIE +LK+S E ++ITIFGSEPHPNYNRI+LS VL G + +++I Sbjct: 3 KKQLVLVGNGMAGVRAIEEILKISNEEFQITIFGSEPHPNYNRILLSKVLQGDTDVKDIT 62 Query: 65 INDLEWYHSHGIRLYMGHTITSIDTAKRKVYSDKGIVMPYDELILATGSNPFMLPLPGAE 124 +ND +WY +GI+LY G + +D + V +D G V PYDELILATGS PF+LPLPGA+ Sbjct: 63 LNDWDWYEENGIQLYTGEEVVKVDPESKTVITDTGRVQPYDELILATGSLPFILPLPGAD 122 Query: 125 KEGVIAFRDIKDCQIMQETSQSYRKAVVIXXXXXXXXXXXXXXXXXMEVSVVHIHPYIME 184 KEGV AFRDIKD IM E S++Y+KA VI M+V+VVH+ PY+ME Sbjct: 123 KEGVTAFRDIKDTDIMLEASKTYKKAAVIGGGLLGLEAARGLLNLGMDVTVVHLAPYLME 182 Query: 185 RQLDEPASVMLRKELEEQGMKFLLNKQSEAILGKKRVKGLLFADGEIADADLIVMAVGIK 244 RQLD A +L+KELE+QGMKFLL KQ+E I G+ RV+GL F DG +ADL+VMAVGIK Sbjct: 183 RQLDAAAGRLLQKELEKQGMKFLLEKQTEEIYGETRVEGLKFKDGSTLEADLVVMAVGIK 242 Query: 245 PNVELAQKSGVQTNRGIIVNDYMETNIPGIYAVGECAEHRGIAYGLVAPLYEQGAVLAKR 304 PNV+L + G+ NRGI+VNDYMET +P IYAVGECAEHRGIAYGLVAPLYEQ VLAK+ Sbjct: 243 PNVQLGKDCGLPVNRGIVVNDYMETEVPNIYAVGECAEHRGIAYGLVAPLYEQAKVLAKK 302 Query: 305 LAGVPTDGYPGSVTSTKLKVSGVDVFSAGQFTERPG--TRSLRYQDEIEGIYKKLVIQDD 362 + GV T Y GSV ST+LKVSGV+VFSAG F E G ++L+ DE +GIYKK+V++ + Sbjct: 303 ICGVETAPYEGSVLSTQLKVSGVEVFSAGDFNEDDGEDKKALKVFDEQDGIYKKIVLRGN 362 Query: 363 QLVGAVLFGDTGDGAQLFSMXXXXXXXXXXXXXXXXXVSSDALASPKGSRLEG-MADDEI 421 Q++GAVLFGD+ +G +LFSM L +G L M+DDEI Sbjct: 363 QVIGAVLFGDSSEGNRLFSMIQKGADISDTSKISILQ----PLNQEEGMSLTAAMSDDEI 418 Query: 422 ICGCNGVSKGAIAEAIQSGGCTSVGQIKACTKASASCGGCKPLVEGLLQLYAGD--NVVT 479 +CGCNGVSKG I +AI+ GCTS +IKACT AS SCGGCKPLV +LQ G + Sbjct: 419 VCGCNGVSKGMIIQAIKEQGCTSTDEIKACTGASRSCGGCKPLVAEILQHTLGSEFDASA 478 Query: 480 VKEGICGCTTLGRDEIVAEIRRMELKTVKEVMNVLEWNTEEGCAKCRPSLNYYLGMLWPE 539 KE ICGCT L RDE+VAEIR L KEVMNVL W T EGC+KCRP+LNYYLGM+ P+ Sbjct: 479 QKEAICGCTDLSRDELVAEIREKGLTHTKEVMNVLGWKTAEGCSKCRPALNYYLGMINPK 538 Query: 540 EYIDEKESRITNERYHANIQKDGTYSVVPRIYGGVTSPAELMKIAEVAAKFEVPLVKFTG 599 EY DE+ESR NER HANIQKDGTYSVVPR+YGGVT+ +L +IA+V K+E+PLVK TG Sbjct: 539 EYEDERESRFVNERMHANIQKDGTYSVVPRMYGGVTNSNDLRRIADVVDKYEIPLVKMTG 598 Query: 600 GQRLDLLGVKKEDLPKMWEELDMPSGHAYGKTLRTVKTCVGSTFCRFGTQDAMGMGIRLE 659 GQR+DL+GVKKEDLPK+W +LDMPSG AYGKTLRTVKTCVG FCRFGTQD+M +GI LE Sbjct: 599 GQRIDLIGVKKEDLPKVWADLDMPSGFAYGKTLRTVKTCVGEQFCRFGTQDSMALGIDLE 658 Query: 660 KAFERLNTPGKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHIGGNGGVHVRATDLLCV 719 K FE L TP K+K+AVS CPRNCAE+ IKD GVV IDGGWE+++GGNGG H+RA DLL Sbjct: 659 KKFEGLYTPHKIKMAVSACPRNCAESGIKDIGVVGIDGGWEIYVGGNGGTHLRAGDLLMK 718 Query: 720 VKTDDEVIEWASAFLQYYREQAGWNERTAQWVERVGLDSIKEVLEVRENRLALQERIHTA 779 VKT +EVIE A+LQYYRE A + ERT+ W+ERVGL ++ VL +E R L +RI+ A Sbjct: 719 VKTAEEVIEITGAYLQYYRETANYLERTSAWIERVGLSHVQSVLNDKEKRKELNDRINQA 778 Query: 780 LSVTTDPWKQIVNEPE-LRKNFEQL 803 LSV DPWK + + + R+ FE + Sbjct: 779 LSVHKDPWKDFLEDGKTTRQLFENV 803 >A7Z174.1 A7Z174_BACA2 NasD EC=1.7.1.4 Length = 805 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/803 (59%), Positives = 593/803 (73%), Gaps = 8/803 (0%) Query: 5 RKKLVLVGNGMAGVRAIEHLLKLSPEAYEITIFGSEPHPNYNRIMLSSVLAGGSSMEEII 64 +K+LVLVGNGMAGVRAIE +L++S + +EITIFG+EPHPNYNRI+LS VL G + +++I Sbjct: 3 KKQLVLVGNGMAGVRAIEEILRVSKDEFEITIFGAEPHPNYNRILLSKVLQGDTDIQDIT 62 Query: 65 INDLEWYHSHGIRLYMGHTITSIDTAKRKVYSDKGIVMPYDELILATGSNPFMLPLPGAE 124 +ND WY + I+LY G T+ +DT + V +D + PYDELILATGS PF+LP+PGA+ Sbjct: 63 LNDWNWYKENNIQLYTGETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGAD 122 Query: 125 KEGVIAFRDIKDCQIMQETSQSYRKAVVIXXXXXXXXXXXXXXXXXMEVSVVHIHPYIME 184 K+GV AFRDIKD M S+ Y+KA VI M+VSV+H+ P++ME Sbjct: 123 KQGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLME 182 Query: 185 RQLDEPASVMLRKELEEQGMKFLLNKQSEAILGKKRVKGLLFADGEIADADLIVMAVGIK 244 RQLD A +L+ ELE+QGM F L KQ+E ILG RV+G+ F DG +ADL+VMAVGI+ Sbjct: 183 RQLDAAAGRLLQNELEKQGMTFFLEKQTEEILGTDRVEGVRFKDGTSIEADLVVMAVGIR 242 Query: 245 PNVELAQKSGVQTNRGIIVNDYMETNIPGIYAVGECAEHRGIAYGLVAPLYEQGAVLAKR 304 PN +L +SG+ NRGIIVNDYM+T+IP IYAVGECAEHRGIAYGLVAPLYEQ VLAK Sbjct: 243 PNTQLGTESGIPVNRGIIVNDYMQTDIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKH 302 Query: 305 LAGVPTDGYPGSVTSTKLKVSGVDVFSAGQFTERPGTRSLRYQDEIEGIYKKLVIQDDQL 364 L G+ T Y GSV ST+LKVSGV+VFSAG F E ++++ DE +GIYKK+V++ +Q+ Sbjct: 303 LCGIETKPYEGSVLSTQLKVSGVEVFSAGDFNESEDKKAIKVFDEQDGIYKKIVLRGNQI 362 Query: 365 VGAVLFGDTGDGAQLFSMXXXXXXXXXXXXXXXXX-VSSDALASPKGSRLEGMADDEIIC 423 VGAVLFGD+ +G++LFSM + +A AS + M+DDEIIC Sbjct: 363 VGAVLFGDSSEGSRLFSMIQKEADISETSKISILQPLDQEAGASMTAA----MSDDEIIC 418 Query: 424 GCNGVSKGAIAEAIQSGGCTSVGQIKACTKASASCGGCKPLVEGLLQLYAGD--NVVTVK 481 GCNGVSKGAI +AIQ GCTS +IKACT AS SCGGCKPLVE +LQ G + K Sbjct: 419 GCNGVSKGAIIQAIQEKGCTSTDEIKACTGASRSCGGCKPLVEDILQYTLGSEFDASAQK 478 Query: 482 EGICGCTTLGRDEIVAEIRRMELKTVKEVMNVLEWNTEEGCAKCRPSLNYYLGMLWPEEY 541 E ICGCT+L RDE+V EI+ L +E+MNVL W T EGC+KCRP+LNYYLGM+ P Y Sbjct: 479 EAICGCTSLSRDEVVEEIKAKGLSHTREIMNVLGWKTPEGCSKCRPALNYYLGMINPATY 538 Query: 542 IDEKESRITNERYHANIQKDGTYSVVPRIYGGVTSPAELMKIAEVAAKFEVPLVKFTGGQ 601 D++ SR NER HANIQKDGTYSVVPR+YGGVT+ +L KIA+V K+E+PLVK TGGQ Sbjct: 539 EDDRTSRFVNERMHANIQKDGTYSVVPRMYGGVTNSQDLRKIADVVDKYEIPLVKMTGGQ 598 Query: 602 RLDLLGVKKEDLPKMWEELDMPSGHAYGKTLRTVKTCVGSTFCRFGTQDAMGMGIRLEKA 661 R+DL+GVKKEDLPK+W ELDMPSG+AYGKTLRTVKTCVG FCRFGTQD+M +GI LEK Sbjct: 599 RIDLIGVKKEDLPKVWAELDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKK 658 Query: 662 FERLNTPGKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHIGGNGGVHVRATDLLCVVK 721 FE LNTP KVK+AVS CPRNCAE+ IKD GVV IDGGWEL++GGNGG H+RA DLL VK Sbjct: 659 FEGLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVK 718 Query: 722 TDDEVIEWASAFLQYYREQAGWNERTAQWVERVGLDSIKEVLEVRENRLALQERIHTALS 781 T++EV+E+A A+LQYYRE A + ERT+ W+ERVGL ++ VL E R L +R++ LS Sbjct: 719 TNEEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNDRMNETLS 778 Query: 782 VTTDPWKQIVNEPELRKN-FEQL 803 V DPW+ + + + K+ FE + Sbjct: 779 VHKDPWQYFLKDKKASKDLFENV 801 >P42435.1 NASD_BACSU Nitrite reductase [NAD(P)H] EC=1.7.1.4 Length = 805 Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/803 (59%), Positives = 589/803 (73%), Gaps = 8/803 (0%) Query: 5 RKKLVLVGNGMAGVRAIEHLLKLSPEAYEITIFGSEPHPNYNRIMLSSVLAGGSSMEEII 64 +K+LVLVGNGMAGVRAIE +L ++ + ++ITIFG+EPHPNYNRI+LS VL G + +++I Sbjct: 3 KKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDIT 62 Query: 65 INDLEWYHSHGIRLYMGHTITSIDTAKRKVYSDKGIVMPYDELILATGSNPFMLPLPGAE 124 +ND +WY + I+LY T+ +DT + V +D + PYDELILATGS PF+LP+PGA+ Sbjct: 63 LNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGAD 122 Query: 125 KEGVIAFRDIKDCQIMQETSQSYRKAVVIXXXXXXXXXXXXXXXXXMEVSVVHIHPYIME 184 K+GV AFRDIKD M S+ Y+KA VI M+VSV+H+ P++ME Sbjct: 123 KKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLME 182 Query: 185 RQLDEPASVMLRKELEEQGMKFLLNKQSEAILGKKRVKGLLFADGEIADADLIVMAVGIK 244 RQLD A +L+ ELE+QGM FLL KQ+E I+G RV+GL F DG +ADL+VMAVGI+ Sbjct: 183 RQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVGIR 242 Query: 245 PNVELAQKSGVQTNRGIIVNDYMETNIPGIYAVGECAEHRGIAYGLVAPLYEQGAVLAKR 304 PN L +SG+ NRGIIVNDYM+T IP IYAVGECAEHRGIAYGLVAPLYEQ VLAK Sbjct: 243 PNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKH 302 Query: 305 LAGVPTDGYPGSVTSTKLKVSGVDVFSAGQFTERPGTRSLRYQDEIEGIYKKLVIQDDQL 364 + G+ T Y GSV ST+LKVSGV+VFSAG F E ++++ DE +GIYKK+V++ +Q+ Sbjct: 303 MCGIETKPYEGSVLSTQLKVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGNQI 362 Query: 365 VGAVLFGDTGDGAQLFSMXXXXXXXXXXXXXXXXXVSSDALASPKGSRLEG-MADDEIIC 423 VGAVLFGD+ +G +LFSM L+ G+ + M+DDEIIC Sbjct: 363 VGAVLFGDSSEGNRLFSMIQKEADISETSKISILQ----PLSQEAGTSITAAMSDDEIIC 418 Query: 424 GCNGVSKGAIAEAIQSGGCTSVGQIKACTKASASCGGCKPLVEGLLQLYAGDN--VVTVK 481 GCNGVSKGAI +AIQ GC+S +IKACT AS SCGGCKPLVE +LQ G + K Sbjct: 419 GCNGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQK 478 Query: 482 EGICGCTTLGRDEIVAEIRRMELKTVKEVMNVLEWNTEEGCAKCRPSLNYYLGMLWPEEY 541 E ICGCTTL RDE+V EI+ L +EVMNVL W T EGC+KCRP+LNYYLGM+ P +Y Sbjct: 479 EAICGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKY 538 Query: 542 IDEKESRITNERYHANIQKDGTYSVVPRIYGGVTSPAELMKIAEVAAKFEVPLVKFTGGQ 601 D++ SR NER HANIQKDGTYSVVPR+YGGVT+ +L KIA+V K+E+PLVK TGGQ Sbjct: 539 EDDRTSRFVNERMHANIQKDGTYSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQ 598 Query: 602 RLDLLGVKKEDLPKMWEELDMPSGHAYGKTLRTVKTCVGSTFCRFGTQDAMGMGIRLEKA 661 R+DL+GVKKEDLPK+WE+LDMPSG+AYGKTLRTVKTCVG FCRFGTQD+M +GI LEK Sbjct: 599 RIDLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKK 658 Query: 662 FERLNTPGKVKLAVSGCPRNCAEATIKDFGVVAIDGGWELHIGGNGGVHVRATDLLCVVK 721 FE LNTP KVK+AVS CPRNCAE+ IKD GVV IDGGWEL++GGNGG H+RA DLL VK Sbjct: 659 FEGLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVK 718 Query: 722 TDDEVIEWASAFLQYYREQAGWNERTAQWVERVGLDSIKEVLEVRENRLALQERIHTALS 781 T++EV+E+A A+LQYYRE A + ERT+ W+ERVGL ++ VL E R L R++ LS Sbjct: 719 TNEEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLS 778 Query: 782 VTTDPWKQIVNEPELRKN-FEQL 803 V DPWK + + + K FE + Sbjct: 779 VHKDPWKDFLEDKQTSKELFENV 801 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,659,506,900 Number of extensions: 195784299 Number of successful extensions: 533129 Number of sequences better than 1.0e-05: 4020 Number of HSP's gapped: 523007 Number of HSP's successfully gapped: 4111 Length of query: 809 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 665 Effective length of database: 1,704,070,043 Effective search space: 1133206578595 Effective search space used: 1133206578595 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)