BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0008.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBZ3.1 B1DBZ3_9BACL Response regulator receiver and ANTAR doma... 228 3e-58 B3K621.1 B3K621_9BACI ANTAR domain protein 224 3e-57 B7KTA6.1 B7KTA6_METC4 Response regulator receiver and ANTAR doma... 75 3e-12 C5ASU0.1 C5ASU0_METEX Two-component response regulator 75 3e-12 B1Z7N6.1 B1Z7N6_METPB Response regulator receiver and ANTAR doma... 74 8e-12 >B1DBZ3.1 B1DBZ3_9BACL Response regulator receiver and ANTAR domain protein Length = 193 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/198 (56%), Positives = 142/198 (71%), Gaps = 7/198 (3%) Query: 1 MHSLLIIQNYKTENVTEERSSTGP-DSLLRSCGYVVTAAASPEEAKLVIGDADASILNLP 59 M SLL+I N ++ P + +L + GY V A+S E AK + ADA + +LP Sbjct: 1 MRSLLVIDN------PGGKAEAQPLEQMLETYGYSVLYASSDETAKNHLPKADAVVFHLP 54 Query: 60 VTEINSWRAALMQCKTAPILWWCTTATADLSVTACGDDIMVDGILSPSMQPQEIHWILHF 119 + E+ +W L+Q K P+LWWC+ TA +S C DD+ +DGIL+PSM QE+HW LHF Sbjct: 55 LGEVKAWGNRLLQRKRLPMLWWCSADTATMSAAFCEDDLPIDGILTPSMSEQELHWALHF 114 Query: 120 SARQCFERQQWLKEREQLLSRIEERKWIDMAKGILSKAKNISESEAYDLLRKQAMNERKR 179 ++ CFERQ WL ER+QL +R+EERKWIDMAKGIL K K +SE+EAYDLLRKQAMNERKR Sbjct: 115 GSKACFERQHWLNERKQLEARLEERKWIDMAKGILCKIKQVSEAEAYDLLRKQAMNERKR 174 Query: 180 MVDVATSIVKVYQLLQDQ 197 +VDVATSIVKVYQLLQ+Q Sbjct: 175 IVDVATSIVKVYQLLQEQ 192 >B3K621.1 B3K621_9BACI ANTAR domain protein Length = 207 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 112/201 (55%), Positives = 143/201 (71%), Gaps = 8/201 (3%) Query: 1 MHSLLIIQNYKTENVTEERSSTG-----PDSLLRSCGYVVTAAASPEEAKLVIGDADASI 55 M SLL+I + ERS T P+ +LRS GY + A + ++A I +AD ++ Sbjct: 1 MRSLLVIHH---PVPASERSDTAAKALLPEFILRSYGYKIHLARNEKQALAGIMEADGTV 57 Query: 56 LNLPVTEINSWRAALMQCKTAPILWWCTTATADLSVTACGDDIMVDGILSPSMQPQEIHW 115 L+LPV+ I W + L Q K P+LWWC+ A S+ AC DD+ +DG+L PSM+ E+HW Sbjct: 58 LHLPVSSIKPWCSTLEQQKRVPVLWWCSDHAASQSLEACEDDVTIDGLLFPSMKEHELHW 117 Query: 116 ILHFSARQCFERQQWLKEREQLLSRIEERKWIDMAKGILSKAKNISESEAYDLLRKQAMN 175 LHFS++ +ERQQW E+ QLL+RIEERKWIDMAKGIL + K ISESEAYD+LRKQAMN Sbjct: 118 TLHFSSKHFYERQQWHDEKTQLLARIEERKWIDMAKGILCEMKQISESEAYDVLRKQAMN 177 Query: 176 ERKRMVDVATSIVKVYQLLQD 196 ERKRMVDVATSIVK+YQLLQ+ Sbjct: 178 ERKRMVDVATSIVKLYQLLQE 198 >B7KTA6.1 B7KTA6_METC4 Response regulator receiver and ANTAR domain protein Length = 195 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 19/175 (10%) Query: 30 SCGYVVTAAASPE-EAKLVIGDADASILNL--PVTEINSWRAALMQCKTAPILWWC---- 82 G VV A P+ +A++ D +++L P ++ + L + P+ + Sbjct: 29 GVGNVVVLADGPDLQARVASLKPDVIVVHLESPSRDVLEQMSGLSRQAERPVAMFVDRSD 88 Query: 83 ---TTATADLSVTACGDDIMVDGILSPSMQPQEIHWILHFSARQCFERQQWLKEREQLLS 139 A D ++A +VDG+ S ++P IL F+A F R Q +E ++ S Sbjct: 89 QTMMQAAVDAGISAY----VVDGLRSERIRPILDIAILRFNA---FARLQ--RELDEARS 139 Query: 140 RIEERKWIDMAKGILSKAKNISESEAYDLLRKQAMNERKRMVDVATSIVKVYQLL 194 + +RK I+ AKGIL K +SE EAY LLR+QAMNE++++VD+A +IV LL Sbjct: 140 ELADRKLIERAKGILMTRKGMSEDEAYKLLRRQAMNEKRKIVDIARAIVTAADLL 194 >C5ASU0.1 C5ASU0_METEX Two-component response regulator Length = 195 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 19/175 (10%) Query: 30 SCGYVVTAAASPE-EAKLVIGDADASILNL--PVTEINSWRAALMQCKTAPILWWC---- 82 G VV A P+ +A++ D +++L P ++ + L + P+ + Sbjct: 29 GVGNVVVLADGPDLQARVASLKPDVIVVHLESPSRDVLEQMSGLSRQAERPVAMFVDRSD 88 Query: 83 ---TTATADLSVTACGDDIMVDGILSPSMQPQEIHWILHFSARQCFERQQWLKEREQLLS 139 A D ++A +VDG+ S ++P IL F+A F R Q +E ++ S Sbjct: 89 QTMMQAAVDAGISAY----VVDGLRSERIRPILDIAILRFNA---FARLQ--RELDEARS 139 Query: 140 RIEERKWIDMAKGILSKAKNISESEAYDLLRKQAMNERKRMVDVATSIVKVYQLL 194 + +RK I+ AKGIL K +SE EAY LLR+QAMNE++++VD+A +IV LL Sbjct: 140 ELADRKLIERAKGILMTRKGMSEDEAYKLLRRQAMNEKRKIVDIARAIVTAADLL 194 >B1Z7N6.1 B1Z7N6_METPB Response regulator receiver and ANTAR domain protein Length = 195 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Query: 99 MVDGILSPSMQPQEIHWILHFSARQCFERQQWLKEREQLLSRIEERKWIDMAKGILSKAK 158 +VDG+ S ++P IL F+A F R Q +E ++ S + +RK I+ AKGIL K Sbjct: 104 VVDGLRSERIRPILDIAILRFNA---FARLQ--RELDEARSELADRKLIERAKGILMTRK 158 Query: 159 NISESEAYDLLRKQAMNERKRMVDVATSIVKVYQLL 194 +SE EAY LLR+QAMNE++++VD+A +IV LL Sbjct: 159 GLSEDEAYKLLRRQAMNEKRKIVDIARAIVTAADLL 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.129 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,070,753,661 Number of extensions: 38829814 Number of successful extensions: 118652 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 118659 Number of HSP's successfully gapped: 138 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)