BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0006.p
         (164 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K669.1 B3K669_9BACI Putative uncharacterized protein                193   4e-48
B4ADA1.1 B4ADA1_BACPU Hypothetical membrane protein                   186   5e-46
A8FDX8.1 A8FDX8_BACP2 Hypothetical membrane protein                   183   5e-45
C0ZAX3.1 C0ZAX3_BREBN Conserved hypothetical membrane protein         170   3e-41
B1YHB6.1 B1YHB6_EXIS2 Putative uncharacterized protein                150   5e-35

>B3K669.1 B3K669_9BACI Putative uncharacterized protein
          Length = 152

 Score =  193 bits (490), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 107/135 (79%)

Query: 18  QNIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLMEGKNMFTLQHMQPWYWFSGMIGVG 77
           QNIFN++VNE TGSWSTTTLVLGMGF+AS +M L +EGK  F +Q+M+PWYW SGMIGVG
Sbjct: 18  QNIFNNRVNEKTGSWSTTTLVLGMGFVASFVMSLAVEGKGTFDIQNMEPWYWISGMIGVG 77

Query: 78  VVICLVQATRLLGPTYAISIVLTSQLGFALLWDSLGWLGLTKVPFSFNQXXXXXXXXXXX 137
           VVICLVQATRLLG T+AISIV+TSQLGFALLWDSLGWLGL KVPF+ NQ           
Sbjct: 78  VVICLVQATRLLGATFAISIVMTSQLGFALLWDSLGWLGLEKVPFTSNQLIGVLVIVGGI 137

Query: 138 XXFKLGGAREPQSDS 152
             FKLGG +E Q  +
Sbjct: 138 LVFKLGGKQEQQETA 152


>B4ADA1.1 B4ADA1_BACPU Hypothetical membrane protein
          Length = 161

 Score =  186 bits (473), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/144 (65%), Positives = 105/144 (72%), Gaps = 2/144 (1%)

Query: 18  QNIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLMEGKNMFTLQHMQPWYWFSGMIGVG 77
           Q IFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLL+EG  MF L+HM+ WYW SG IGVG
Sbjct: 18  QTIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLLEGTGMFRLRHMEAWYWISGAIGVG 77

Query: 78  VVICLVQATRLLGPTYAISIVLTSQLGFALLWDSLGWLGLTKVPFSFNQXXXXXXXXXXX 137
           VVICLVQ+ + LGPTY ISIVLTSQLG ALL+DSLGWLGL KV FS  +           
Sbjct: 78  VVICLVQSIKRLGPTYGISIVLTSQLGCALLFDSLGWLGLEKVEFSLTKLLGVIVIVAGI 137

Query: 138 XXFKLGGAREPQSDSS--AGKPQQ 159
             FKL      ++D S   G PQ+
Sbjct: 138 LVFKLTKLESAETDQSQEKGLPQE 161


>A8FDX8.1 A8FDX8_BACP2 Hypothetical membrane protein
          Length = 161

 Score =  183 bits (464), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 18  QNIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLMEGKNMFTLQHMQPWYWFSGMIGVG 77
           Q IFNSKVNE TGSWSTTTLVLGMGFIASLLMGLL+EG  MF L+HM+ WYW SG IGVG
Sbjct: 18  QTIFNSKVNEKTGSWSTTTLVLGMGFIASLLMGLLLEGTGMFRLRHMEAWYWISGAIGVG 77

Query: 78  VVICLVQATRLLGPTYAISIVLTSQLGFALLWDSLGWLGLTKVPFSFNQXXXXXXXXXXX 137
           VVICLVQ+ + LGPTY ISIVLTSQLG ALL+DSLGWLGL KV FS  +           
Sbjct: 78  VVICLVQSIKRLGPTYGISIVLTSQLGCALLFDSLGWLGLEKVEFSLTKLLGVMVIVAGI 137

Query: 138 XXFKLGGAREPQSDSS--AGKPQQ 159
             FKL      ++D S   G PQ+
Sbjct: 138 LVFKLTKLESAETDQSQEKGLPQE 161


>C0ZAX3.1 C0ZAX3_BREBN Conserved hypothetical membrane protein
          Length = 155

 Score =  170 bits (431), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/136 (63%), Positives = 99/136 (72%)

Query: 18  QNIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLMEGKNMFTLQHMQPWYWFSGMIGVG 77
           QNIFN KV+E  G+WSTTTLVLGMGF++SL MGL+ EG  +F+ Q MQPWYWFSGMIGVG
Sbjct: 18  QNIFNRKVSEQAGTWSTTTLVLGMGFLSSLTMGLIFEGSQLFSPQTMQPWYWFSGMIGVG 77

Query: 78  VVICLVQATRLLGPTYAISIVLTSQLGFALLWDSLGWLGLTKVPFSFNQXXXXXXXXXXX 137
           VV CLVQ  RLLGPTYAISI LT+QLGFAL  DS+GWLGL +VP +F Q           
Sbjct: 78  VVFCLVQGMRLLGPTYAISIALTAQLGFALWSDSIGWLGLIQVPITFTQLFGVLVIVGGV 137

Query: 138 XXFKLGGAREPQSDSS 153
             FKLGG  + +   S
Sbjct: 138 IVFKLGGEWQQKRSMS 153


>B1YHB6.1 B1YHB6_EXIS2 Putative uncharacterized protein
          Length = 156

 Score =  150 bits (378), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 94/127 (74%)

Query: 18  QNIFNSKVNEHTGSWSTTTLVLGMGFIASLLMGLLMEGKNMFTLQHMQPWYWFSGMIGVG 77
           QN FN+KV E  G+W+TTTLVLG+GF+ASL +GLL+EG  +F+   MQPW+WFSG+IGVG
Sbjct: 18  QNTFNAKVKEQVGAWATTTLVLGLGFLASLTIGLLVEGGGLFSTSGMQPWFWFSGIIGVG 77

Query: 78  VVICLVQATRLLGPTYAISIVLTSQLGFALLWDSLGWLGLTKVPFSFNQXXXXXXXXXXX 137
           VV+C+ Q  + LGP+YAISIV+ SQ+ FALLWD+LGW GL +V F++ +           
Sbjct: 78  VVLCVTQGVQQLGPSYAISIVMVSQILFALLWDTLGWFGLDQVAFTWTKAVGVVLIGGGV 137

Query: 138 XXFKLGG 144
             F+LGG
Sbjct: 138 LLFQLGG 144


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 792,945,080
Number of extensions: 27105981
Number of successful extensions: 82187
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 82192
Number of HSP's successfully gapped: 105
Length of query: 164
Length of database: 3,060,696,203
Length adjustment: 124
Effective length of query: 40
Effective length of database: 1,892,490,343
Effective search space: 75699613720
Effective search space used: 75699613720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)