BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0005.p (237 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K670.1 B3K670_9BACI Cyclic nucleotide-binding 279 1e-73 C0ZAX2.1 C0ZAX2_BREBN Probable transcriptional regulator 279 1e-73 B4ADA0.1 B4ADA0_BACPU Catabolite gene activator 256 1e-66 A8FDX9.1 A8FDX9_BACP2 Possible Crp family transcriptional regulator 251 4e-65 B1DLA6.1 B1DLA6_9BACL Cyclic nucleotide-binding protein 214 5e-54 >B3K670.1 B3K670_9BACI Cyclic nucleotide-binding Length = 233 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 177/232 (76%) Query: 1 MKEIQDSEQVQAYIAAHSLAAIFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKL 60 MKEI D+E +Q ++ ++ + +IF + L +L LY F G+ IC++G+P+ LYVLV+GK+ Sbjct: 1 MKEIHDAELMQDFLLSNQINSIFPDGLRPYLVLYHFDHGDIICTQGEPAEMLYVLVEGKI 60 Query: 61 KIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRD 120 KIFTT+ EGK L++SFK PLE+IGD+EY+QG MINTV+AVSPV+M+G+ YRWL KYG++ Sbjct: 61 KIFTTSAEGKALVLSFKNPLEVIGDIEYVQGNPMINTVQAVSPVYMIGVHYRWLRKYGQE 120 Query: 121 YPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINL 180 +PPLL F+L +IT KFY KSNFLS NL+HPVEVRLASYLLS+S + S + +L Sbjct: 121 HPPLLQFLLRIITRKFYIKSNFLSFNLLHPVEVRLASYLLSVSEEASGTFVMSDPAAYHL 180 Query: 181 TDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLLVKDKAGLAALASRNIYE 232 TD AN +GTSYRHLNRVI K + +GLI R G +L+KD+ L ++A NIYE Sbjct: 181 TDVANLLGTSYRHLNRVIQKFSHEGLIVRRKGSILIKDREALMSVAGGNIYE 232 >C0ZAX2.1 C0ZAX2_BREBN Probable transcriptional regulator Length = 232 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 133/227 (58%), Positives = 172/227 (75%) Query: 1 MKEIQDSEQVQAYIAAHSLAAIFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKL 60 MKEI++ E +Q Y+ H LA++F E HL LY F GE IC++G+ + +LYVLVKGK+ Sbjct: 1 MKEIENRELLQQYLHEHQLASVFYEPFLPHLSLYQFDHGELICAQGEAACHLYVLVKGKV 60 Query: 61 KIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRD 120 K+FTT+PEGK LI+SFK PLE+IGD+EY++G N+VEA S V M+GI YRWL KYG D Sbjct: 61 KVFTTSPEGKTLILSFKKPLEVIGDIEYVRGISYQNSVEAASSVQMIGIHYRWLKKYGTD 120 Query: 121 YPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINL 180 Y PLL F+L++IT+KF KSN LS+NL++PVEVR A YLLS+S +E + Q+ST L Sbjct: 121 YAPLLQFLLQIITNKFCVKSNTLSINLLYPVEVRFARYLLSVSIEEWNSANREQISTSYL 180 Query: 181 TDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLLVKDKAGLAALAS 227 D AN IGTSYRHLNRVI + ++GLIER NG+LL+KD+ GLA +AS Sbjct: 181 LDAANMIGTSYRHLNRVIQQFCKEGLIERANGYLLIKDREGLAKMAS 227 >B4ADA0.1 B4ADA0_BACPU Catabolite gene activator Length = 226 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 123/232 (53%), Positives = 167/232 (71%), Gaps = 6/232 (2%) Query: 1 MKEIQDSEQVQAYIAAHSLAAIFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKL 60 M+E+QD +Y+ AH L ++F+++L H+ L+ + QGE +CSKGD YLY+LVKGKL Sbjct: 1 MEELQDESLFASYMKAHQLESVFHQKLISHVSLWRYEQGELVCSKGDKREYLYLLVKGKL 60 Query: 61 KIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRD 120 KIFTTT EGK I+SFK PLE IGD+EY+Q T+M+NTVEAV+ VHML + ++ L ++ +D Sbjct: 61 KIFTTTKEGKTFILSFKHPLEAIGDIEYVQQTDMVNTVEAVTEVHMLRVSHQALMRHAKD 120 Query: 121 YPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINL 180 P +L F+L+ IT+KFY KSN LS +L++PVEVRLASYLLS+ D+ S + L Sbjct: 121 DPRMLTFLLKGITNKFYTKSNDLSFHLLYPVEVRLASYLLSVVTDDDSA------SALRL 174 Query: 181 TDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLLVKDKAGLAALASRNIYE 232 TD A+ IGTSYRH+NRVI + + GLIER G + + D+ GL +A NIYE Sbjct: 175 TDAASLIGTSYRHINRVIQQFCEKGLIERQRGKITICDRKGLLEIAEHNIYE 226 >A8FDX9.1 A8FDX9_BACP2 Possible Crp family transcriptional regulator Length = 226 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 124/233 (53%), Positives = 168/233 (72%), Gaps = 8/233 (3%) Query: 1 MKEIQDSEQVQAYIAAHSLAAIFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKL 60 M+E+ D Y+ AH L ++F+++L H+ L + QGE +CSKGD YLY+LVKGKL Sbjct: 1 MEELHDESLFAYYMKAHQLESVFHQKLMSHVSLCRYEQGELVCSKGDKREYLYLLVKGKL 60 Query: 61 KIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRD 120 KIFTTT EGK I+SFK PLE IGD+EY+Q T+M+NTVEAV+ VHML + ++ L ++ +D Sbjct: 61 KIFTTTKEGKTFILSFKHPLEAIGDIEYVQQTDMVNTVEAVTEVHMLRVSHQALMRHAKD 120 Query: 121 YPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLASYLLS-ISYDESDPNFTGQLSTIN 179 P +L+F+L+ IT+KFY KSN LS +L++PVEVRLASYLLS ++ DES S + Sbjct: 121 DPRVLNFLLKGITNKFYTKSNDLSFHLLYPVEVRLASYLLSVVTSDES-------ASALR 173 Query: 180 LTDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLLVKDKAGLAALASRNIYE 232 LTD A+ IGTSYRH+NRVI + + GLIER G++ + D+ GL +A NIYE Sbjct: 174 LTDAASLIGTSYRHINRVIQQFCEKGLIERRRGNITISDRKGLLEIAEHNIYE 226 >B1DLA6.1 B1DLA6_9BACL Cyclic nucleotide-binding protein Length = 234 Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 154/235 (65%), Gaps = 7/235 (2%) Query: 1 MKEIQDSEQVQAYIAAHSLAAIFNEQLSGHLHLYSFAQGEHICSKGDPSGYLYVLVKGKL 60 MKEI D ++ Y+A ++L +F L HL LY F + +C +G+ Y++ L++GK+ Sbjct: 1 MKEILDDARIDRYLAQYALDDVFPSSLRQHLTLYRFEPDDTLCKQGEIPEYIFFLMRGKV 60 Query: 61 KIFTTTPEGKMLIISFKTPLELIGDVEYIQGTEMINTVEAVSPVHMLGIEYRWLNKYGRD 120 K++TT+ +GK L+I+F +PL ++G++E + E +NTV AV+PV + RWL Y R+ Sbjct: 61 KVYTTSADGKTLLINFTSPLGVLGEIECLNELENLNTVSAVTPVETVAFHKRWLKLY-RE 119 Query: 121 YPPLLHFMLEMITHKFYRKSNFLSLNLMHPVEVRLASYLLSISYDESDPNFTGQLSTINL 180 P L FML ++T KFY KS LS NL++PVEVRLASYLLS++ + ++ST +L Sbjct: 120 EVPFLQFMLHLVTEKFYNKSVSLSFNLLYPVEVRLASYLLSVTTPDD-----ARVSTAHL 174 Query: 181 TDTANFIGTSYRHLNRVIYKLTQDGLIERGNGHLLVKDKAGLAALASRNIYEPNG 235 D AN IGTSYRHLNR+I T LIER G L+VK++ GL A +NIYE NG Sbjct: 175 KDMANLIGTSYRHLNRIILNFTSANLIERSRGTLVVKNRMGLEEAAGKNIYE-NG 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,435,514,762 Number of extensions: 59118076 Number of successful extensions: 149314 Number of sequences better than 1.0e-05: 722 Number of HSP's gapped: 149899 Number of HSP's successfully gapped: 722 Length of query: 237 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 105 Effective length of database: 1,817,122,223 Effective search space: 190797833415 Effective search space used: 190797833415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)