BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0004.p
         (141 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K671.1 B3K671_9BACI Putative uncharacterized protein                207   3e-52
C0ZAX1.1 C0ZAX1_BREBN Conserved hypothetical membrane protein         192   1e-47
B4AD99.1 B4AD99_BACPU Hypothetical membrane protein                   184   3e-45
A8FDY0.1 A8FDY0_BACP2 Hypothetical membrane protein                   183   3e-45
B1YHB4.1 B1YHB4_EXIS2 Putative uncharacterized protein                149   7e-35

>B3K671.1 B3K671_9BACI Putative uncharacterized protein
          Length = 141

 Score =  207 bits (526), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 114/129 (88%)

Query: 13  CITLQGVANARISQDIGTWQAATITQFTGFVMALMILLFVRDAKKQGFKQVSPLYLFGGA 72
           CITLQGVANARISQD+GTWQAA +TQ TGF+MAL+ILLFVRD  +QGF QV PLYL GGA
Sbjct: 13  CITLQGVANARISQDMGTWQAAAVTQLTGFLMALVILLFVRDGSRQGFGQVKPLYLIGGA 72

Query: 73  LAAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGMM 132
           L A IIFSEVTAIQ IGVTLTISALLIAQL LTFLID  GWFGV K++M LPQFIGIGMM
Sbjct: 73  LGAPIIFSEVTAIQNIGVTLTISALLIAQLFLTFLIDSNGWFGVAKKRMSLPQFIGIGMM 132

Query: 133 VAGVVILKL 141
           +AGVVI+KL
Sbjct: 133 IAGVVIIKL 141


>C0ZAX1.1 C0ZAX1_BREBN Conserved hypothetical membrane protein
          Length = 141

 Score =  192 bits (487), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 108/127 (85%)

Query: 14  ITLQGVANARISQDIGTWQAATITQFTGFVMALMILLFVRDAKKQGFKQVSPLYLFGGAL 73
           ITLQGVANARISQDIGTWQ AT+TQ TGF+ A ++LLF RD K Q +++V PLYL GG L
Sbjct: 14  ITLQGVANARISQDIGTWQTATLTQLTGFLTAFILLLFFRDGKWQAYRRVKPLYLTGGTL 73

Query: 74  AAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGMMV 133
           AAFIIFS VTAIQ IGVT+TISA+LIAQL LTFLID  GWFGV KQKMRLP FIGIGMM+
Sbjct: 74  AAFIIFSNVTAIQHIGVTMTISAVLIAQLSLTFLIDSNGWFGVDKQKMRLPHFIGIGMMI 133

Query: 134 AGVVILK 140
            GV+IL+
Sbjct: 134 LGVLILR 140


>B4AD99.1 B4AD99_BACPU Hypothetical membrane protein
          Length = 165

 Score =  184 bits (466), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 108/129 (83%)

Query: 13  CITLQGVANARISQDIGTWQAATITQFTGFVMALMILLFVRDAKKQGFKQVSPLYLFGGA 72
           CITLQGVANARISQDIGTWQAATITQ TGF+++L+ILL VRD   + +++V PLYL GGA
Sbjct: 37  CITLQGVANARISQDIGTWQAATITQLTGFIISLVILLIVRDGHFREYRKVQPLYLIGGA 96

Query: 73  LAAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGMM 132
            AA IIF+EVTAIQ IGVTLTI+ALLIAQL  TF ID KGWFGV K+KM+ P + GI +M
Sbjct: 97  FAAIIIFNEVTAIQIIGVTLTIAALLIAQLAFTFAIDAKGWFGVQKKKMKWPHYAGILLM 156

Query: 133 VAGVVILKL 141
           V GV+ILKL
Sbjct: 157 VTGVIILKL 165


>A8FDY0.1 A8FDY0_BACP2 Hypothetical membrane protein
          Length = 141

 Score =  183 bits (465), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/129 (72%), Positives = 108/129 (83%)

Query: 13  CITLQGVANARISQDIGTWQAATITQFTGFVMALMILLFVRDAKKQGFKQVSPLYLFGGA 72
           CITLQGVANARISQDIGTWQAATITQ TGF+++L+ILL VRD   + +++V PLYL GGA
Sbjct: 13  CITLQGVANARISQDIGTWQAATITQLTGFIISLVILLIVRDGHFREYRKVQPLYLIGGA 72

Query: 73  LAAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGMM 132
            AA IIF+EVTAIQ IGVTLTI+ALLIAQL  TF ID KGWFGV K+KM+ P + GI +M
Sbjct: 73  FAAIIIFNEVTAIQIIGVTLTIAALLIAQLAFTFAIDAKGWFGVQKKKMKWPHYAGILLM 132

Query: 133 VAGVVILKL 141
           V GV+ILKL
Sbjct: 133 VTGVIILKL 141


>B1YHB4.1 B1YHB4_EXIS2 Putative uncharacterized protein
          Length = 141

 Score =  149 bits (377), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 14  ITLQGVANARISQDIGTWQAATITQFTGFVMALMILLFVRDAKKQGFKQVSPLYLFGGAL 73
           +TLQ VANARIS  IGTWQAAT+TQ TGFV+AL+I L +RD   +  K V  LYL GGAL
Sbjct: 14  LTLQSVANARISNGIGTWQAATLTQMTGFVVALLITLILRDRTFRQMKDVKVLYLSGGAL 73

Query: 74  AAFIIFSEVTAIQGIGVTLTISALLIAQLCLTFLIDIKGWFGVVKQKMRLPQFIGIGMMV 133
           AA ++FS +TA+  +GVTLTIS  LIAQL L  +ID  GWFG++K++++LPQ IGI MM+
Sbjct: 74  AAAVLFSNMTAVHLMGVTLTISLFLIAQLGLALVIDWNGWFGMIKRRLQLPQVIGILMMI 133

Query: 134 AGVVILK 140
            GV+ILK
Sbjct: 134 GGVLILK 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.332    0.144    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 633,061,120
Number of extensions: 21492794
Number of successful extensions: 75969
Number of sequences better than 1.0e-05: 196
Number of HSP's gapped: 76016
Number of HSP's successfully gapped: 196
Length of query: 141
Length of database: 3,060,696,203
Length adjustment: 104
Effective length of query: 37
Effective length of database: 2,080,910,643
Effective search space: 76993693791
Effective search space used: 76993693791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 126 (53.1 bits)