BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0340.0003.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K668.1 B3K668_9BACI NUDIX hydrolase                                 179   5e-44
Q099G7.1 Q099G7_STIAU MutT/nudix family protein                       178   1e-43
A8M323.1 A8M323_SALAI NUDIX hydrolase                                 166   8e-40
C4E4S0.1 C4E4S0_STRRS NUDIX family protein                            161   2e-38
C1RTW6.1 C1RTW6_9SPHI ADP-ribose pyrophosphatase                      159   7e-38

>B3K668.1 B3K668_9BACI NUDIX hydrolase
          Length = 134

 Score =  179 bits (455), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 104/128 (81%)

Query: 6   IDKVAWIVISDGRVLGARSKGKDTYYFPGGKRESGETDVQTLIREVKEELSVDILSGTVK 65
           IDK+AWI I DGR+L ARSKGKDTYY PGGKRE GE+D++TL+RE++EELSV I   +  
Sbjct: 5   IDKIAWIHIVDGRMLCARSKGKDTYYLPGGKREPGESDIETLVREIEEELSVRIKPESAA 64

Query: 66  PFGIFEAAAHGKAEGVQVKMACFTADYTGELTPASEIAEIAWLAYEDRERVSAVSRMVFD 125
             G F A+AHGK+EGV+V M+C+TA+Y G++ PASEI E+AWL Y+DR RVS VS+M+FD
Sbjct: 65  NAGSFRASAHGKSEGVRVTMSCYTAEYEGKINPASEIEELAWLTYKDRGRVSEVSQMIFD 124

Query: 126 QLHELKLL 133
            LHELK L
Sbjct: 125 HLHELKKL 132


>Q099G7.1 Q099G7_STIAU MutT/nudix family protein
          Length = 138

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 103/133 (77%)

Query: 1   MMNGIIDKVAWIVISDGRVLGARSKGKDTYYFPGGKRESGETDVQTLIREVKEELSVDIL 60
           +M   IDK+AWI + +GR+L ARS+GKD YY PGGKR+ GETD++TL REV+EELSV I 
Sbjct: 5   LMTSSIDKIAWIHLVNGRILTARSQGKDLYYLPGGKRDPGETDLETLAREVQEELSVRIK 64

Query: 61  SGTVKPFGIFEAAAHGKAEGVQVKMACFTADYTGELTPASEIAEIAWLAYEDRERVSAVS 120
             TV   G FEA AHGKA+GVQV+M C+ A++ GEL PASEIAE+AWL Y DR RVS VS
Sbjct: 65  PETVSHVGTFEAQAHGKADGVQVRMTCYAAEFEGELAPASEIAELAWLTYGDRGRVSRVS 124

Query: 121 RMVFDQLHELKLL 133
           +++FDQLH  K L
Sbjct: 125 QLIFDQLHAQKRL 137


>A8M323.1 A8M323_SALAI NUDIX hydrolase
          Length = 136

 Score =  166 bits (419), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 95/129 (73%)

Query: 5   IIDKVAWIVISDGRVLGARSKGKDTYYFPGGKRESGETDVQTLIREVKEELSVDILSGTV 64
           +IDK+AWI I +G +L  RS GKD YY PGGKRE GE+D++TL+RE++EELSV I++ T 
Sbjct: 3   VIDKIAWIHIQNGAILSTRSTGKDAYYIPGGKREEGESDIETLVREIQEELSVTIVTDTA 62

Query: 65  KPFGIFEAAAHGKAEGVQVKMACFTADYTGELTPASEIAEIAWLAYEDRERVSAVSRMVF 124
           +  GIF A AHG  +G  V+M C+TA+Y GEL P SEI EI WL Y DR+RVS V +++F
Sbjct: 63  EHAGIFHAQAHGHPDGTAVRMICYTAEYQGELQPDSEIEEIVWLTYADRDRVSPVDQIIF 122

Query: 125 DQLHELKLL 133
           DQLH    L
Sbjct: 123 DQLHRTAQL 131


>C4E4S0.1 C4E4S0_STRRS NUDIX family protein
          Length = 140

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/128 (58%), Positives = 95/128 (74%)

Query: 1   MMNGIIDKVAWIVISDGRVLGARSKGKDTYYFPGGKRESGETDVQTLIREVKEELSVDIL 60
           +M   IDKVAWI I  GR+LGARS+GKD  Y PGGKRE+GETD+ TL+RE+ EELSV I+
Sbjct: 7   VMADPIDKVAWIRIEGGRILGARSRGKDVCYLPGGKREAGETDLDTLVREIGEELSVAIV 66

Query: 61  SGTVKPFGIFEAAAHGKAEGVQVKMACFTADYTGELTPASEIAEIAWLAYEDRERVSAVS 120
             + +  G+FEA AHG AEG+ V+M+C+ ADY G+L P  E+ E+ WLAY DR RVS V 
Sbjct: 67  RESGRFAGVFEARAHGHAEGLSVRMSCYEADYRGDLAPGGEVEEVVWLAYGDRHRVSPVV 126

Query: 121 RMVFDQLH 128
           R++FD L 
Sbjct: 127 RLIFDSLR 134


>C1RTW6.1 C1RTW6_9SPHI ADP-ribose pyrophosphatase
          Length = 132

 Score =  159 bits (402), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 97/129 (75%)

Query: 5   IIDKVAWIVISDGRVLGARSKGKDTYYFPGGKRESGETDVQTLIREVKEELSVDILSGTV 64
           +IDK+AWI I DG +L  RS GKD YY PGGKRE GETD Q L RE+KEELSVD+   T+
Sbjct: 3   LIDKLAWIEIKDGAILSTRSYGKDKYYIPGGKREDGETDAQALCREIKEELSVDLHIATL 62

Query: 65  KPFGIFEAAAHGKAEGVQVKMACFTADYTGELTPASEIAEIAWLAYEDRERVSAVSRMVF 124
           +  GIF+A AHG   G++VKM C+TA+Y+GE++ A+EI E+ WL Y D++++S V +++F
Sbjct: 63  QLVGIFQAQAHGHTAGIEVKMTCYTAEYSGEISAAAEIEEVRWLQYIDKDKISEVDKLIF 122

Query: 125 DQLHELKLL 133
           D L E +L+
Sbjct: 123 DFLKEKQLI 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 820,181,028
Number of extensions: 31091885
Number of successful extensions: 83748
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 84031
Number of HSP's successfully gapped: 129
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)