BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0340.0002.p (659 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DCH5.1 B1DCH5_9BACL Small GTP-binding protein 808 0.0 C0ZDT6.1 C0ZDT6_BREBN Probable tetracycline resistant protein 784 0.0 B3K7B0.1 B3K7B0_9BACI Small GTP-binding protein 769 0.0 C1FQB0.1 C1FQB0_CLOBJ Tetracycline resistance protein TetP 759 0.0 C1I503.1 C1I503_9CLOT Putative uncharacterized protein 755 0.0 >B1DCH5.1 B1DCH5_9BACL Small GTP-binding protein Length = 651 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/654 (59%), Positives = 487/654 (74%), Gaps = 5/654 (0%) Query: 1 MKNITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQ 60 MK +TIG+ AHVDAGKTT AEQLLYHT +IR RGRVDHKD +LD+H+IE+ARGITVFADQ Sbjct: 1 MKQVTIGMFAHVDAGKTTLAEQLLYHTNSIRERGRVDHKDAYLDSHDIERARGITVFADQ 60 Query: 61 AEFILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHG 120 A G Y+L+DTPGHVDFSPEMERA+QV+DYAV++VSAVEGV+GHTETVWQLL H Sbjct: 61 AVMTYNGATYYLIDTPGHVDFSPEMERAIQVMDYAVLVVSAVEGVQGHTETVWQLLSKHR 120 Query: 121 IPTFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKI-SEELKVFLAERDERLL 179 +PTFFFINK DRTGAD RV EEI+ L+ A L+ S G + E L LAERDERL Sbjct: 121 VPTFFFINKIDRTGADVNRVMEEIQQHLTQDACLMTDSFAGGVLGEPLVESLAERDERLF 180 Query: 180 DAYLEGSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLP 239 DA+L G + W +AL+ MV+ ++PC+ GSALQD G+ FL+ L LT DY+ P Sbjct: 181 DAFLSGEGDRAFWLQALQDMVKNSRLYPCVGGSALQDTGVKEFLEQLHLLTTADYNGQAP 240 Query: 240 FAGRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASV 299 F GRVYKIRHD+ GTR+TYIKAL G LKVREEL YG + E+ T + VNG K +V Sbjct: 241 FGGRVYKIRHDKSGTRLTYIKALSGTLKVREELCYGGGDGQICEKATRLMLVNGSKMQAV 300 Query: 300 DWAAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLL 359 D +AG+LFAV GLS G GVG+ D+ +LVP L S+V+F + +K+VL AF++L Sbjct: 301 DQVSAGDLFAVIGLSEADAGQGVGLYSDKLSYDLVPALTSKVIFSEALPVKDVLKAFRIL 360 Query: 360 GAEDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPV 419 AEDPSLNV W+ TLQE+HI VMG IQLE+L+Q++++RF V FG PEILYKETI PV Sbjct: 361 NAEDPSLNVVWEETLQEIHIHVMGVIQLEVLQQLVKDRFGFDVDFGSPEILYKETILRPV 420 Query: 420 YGCGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLL 479 G GHFEPL+HYAEV L +EPGERGSG+ F N H DL+ G Q+ + +L E HHGLL Sbjct: 421 KGYGHFEPLRHYAEVHLLLEPGERGSGITFKNAAHVHDLSIGNQNLIETHLFEREHHGLL 480 Query: 480 TGSPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTG 539 TGSPLTD+++TLL+G AHN+HTHGGDFREAA RALRQGLE+A+N+LLEP Y KI+++ Sbjct: 481 TGSPLTDVQVTLLTGAAHNEHTHGGDFREAAFRALRQGLEKADNLLLEPFYGYKIKVELD 540 Query: 540 DLGKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSL 599 LGKV++D+Q+A+G+F PP + T + AV++G+VPVATF++Y+ LAA T G+G++ L Sbjct: 541 HLGKVLSDLQRASGQFDPP----QTTQSHAVVTGRVPVATFMDYSTELAAFTHGRGSIQL 596 Query: 600 KVAEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMHI 653 A Y CH + VI K Y KDADP Y SSSIFCAKG Y+V WDEA+A MH+ Sbjct: 597 IFAGYDRCHNEQEVIERKGYRKDADPLYTSSSIFCAKGAGYAVAWDEAEAKMHL 650 >C0ZDT6.1 C0ZDT6_BREBN Probable tetracycline resistant protein Length = 651 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/654 (58%), Positives = 480/654 (73%), Gaps = 5/654 (0%) Query: 1 MKNITIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQ 60 MK +TIGL AHVDAGKTTFAEQLLYHT +IRSRGRVDH+D FLD+H+IE+ RGITVFADQ Sbjct: 1 MKRLTIGLFAHVDAGKTTFAEQLLYHTNSIRSRGRVDHQDAFLDSHDIERQRGITVFADQ 60 Query: 61 AEFILGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHG 120 A G Y+L+DTPGHVDFS EMERA+ V+DYA+VIVSAVEGV+GHTETVWQLLR H Sbjct: 61 AVMHHQGDVYYLIDTPGHVDFSSEMERAIGVMDYAIVIVSAVEGVQGHTETVWQLLRKHR 120 Query: 121 IPTFFFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQS-ECGKISEELKVFLAERDERLL 179 IPTFFFINKTDR GAD R EEIRS L++ + S G ++E L+ + ER++ LL Sbjct: 121 IPTFFFINKTDRIGADASRTEEEIRSQLTADVCSIKDSFANGIVAEGLREMMTERNDSLL 180 Query: 180 DAYLEGSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLP 239 +A++E + W AL+ M+REG +FPC GSALQD G+ FL+ L LT YD P Sbjct: 181 EAFIEEREDQAFWLGALQEMIREGRLFPCAYGSALQDDGVLEFLNQLSLLTTASYDETAP 240 Query: 240 FAGRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASV 299 F GR+YKIRH G R+T +KAL G LKVRE L Y + E+IT I G K SV Sbjct: 241 FGGRIYKIRHAANGLRLTLVKALSGNLKVRELLSYESGGLRYEEKITQILLFTGKKSHSV 300 Query: 300 DWAAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLL 359 + AG+LFAV GLS G GVG+ D E PTL+S+V F+ +H+++VL AF++L Sbjct: 301 EQVTAGDLFAVVGLSEAEAGQGVGLYSDNFAYETKPTLQSKVQFDGSLHVQQVLGAFRIL 360 Query: 360 GAEDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPV 419 AEDPSLNV W+ +LQE+HI+VMG IQLE+LEQ+++ERF ++FG PEILYKETI + V Sbjct: 361 NAEDPSLNVVWEESLQEIHIRVMGLIQLEVLEQVVKERFGFDISFGQPEILYKETIQSAV 420 Query: 420 YGCGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLL 479 G GHFEPL+HYAEV L +EPGERGSG+ F + CH D+L+ YQ+ V +L E HHGLL Sbjct: 421 TGYGHFEPLRHYAEVHLLLEPGERGSGIHFTSVCHPDELSFNYQNLVQSHLYEREHHGLL 480 Query: 480 TGSPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTG 539 TG P+TD+++TLL GRAHN+HTHGGDFREA RALRQGLE+AEN+LLEP YD KI++ Sbjct: 481 TGMPVTDMKITLLRGRAHNEHTHGGDFREATFRALRQGLEKAENMLLEPYYDFKIKVGMN 540 Query: 540 DLGKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSL 599 ++G+V++D+Q+A+G F PP +++ T A+I+G+VPVATF+NY+ LA+ T G+G++ Sbjct: 541 EMGRVLSDVQRASGSFEPP----QMSDTHAIITGRVPVATFMNYSTELASFTHGRGSIRC 596 Query: 600 KVAEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMHI 653 Y CH E VI K+Y K+ADP Y SSSIFCAKG YSVPWDE +A MH+ Sbjct: 597 VFGGYDRCHNAEEVIERKSYEKEADPVYTSSSIFCAKGAGYSVPWDEVEAKMHL 650 >B3K7B0.1 B3K7B0_9BACI Small GTP-binding protein Length = 674 Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/652 (57%), Positives = 464/652 (71%), Gaps = 7/652 (1%) Query: 5 TIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQAEFI 64 TIG+ AHVDAGKTT AEQLLY T I+ RGRVDH+ +LD H+IEK RGITVFADQA Sbjct: 27 TIGMFAHVDAGKTTLAEQLLYTTHTIQERGRVDHQSAYLDRHDIEKERGITVFADQATMH 86 Query: 65 LGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHGIPTF 124 G+ Y+L+DTPGHVDFSPEMERA+QV+D AVV++SAVEGVEGHTETVWQLLR HG+P+F Sbjct: 87 FNGSTYYLIDTPGHVDFSPEMERAIQVMDAAVVVISAVEGVEGHTETVWQLLRKHGVPSF 146 Query: 125 FFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSEC---GKISEELKVFLAERDERLLDA 181 FINK DR GAD RV EIRS L+ + + + G + L F+AER+E+LL+ Sbjct: 147 LFINKIDRVGADVPRVLAEIRSELAEDVCWITEEDVLQEGLMQSSLIEFIAERNEKLLEL 206 Query: 182 YLEGSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLPFA 241 Y+ + W +A+ +MVR+G +FPC GSALQ+VG+ F+ L LTVTDYD FA Sbjct: 207 YMGEGYEASRWLDAMTAMVRKGELFPCFSGSALQNVGVTHFMHQLDLLTVTDYDPEAAFA 266 Query: 242 GRVYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASVDW 301 GR YKIRHDE+G R+TYIKA G L+VR+E+ Y + + E++T IR +NG + VD Sbjct: 267 GRAYKIRHDEQGARLTYIKATGGTLQVRDEITYVSGTETITEKVTHIRLINGGRATPVDR 326 Query: 302 AAAGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLLGA 361 AG+LFAVTG+SA G G+G L R ELVPTLKS+V FE +H K++L F+LL A Sbjct: 327 VHAGDLFAVTGISAAAAGVGMGDLSGRTVYELVPTLKSKVQFESSIHPKDMLRCFRLLDA 386 Query: 362 EDPSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPVYG 421 EDPSL+V WD Q +HI VMG IQLE+LE+I+ ERF +AFG PEILYKETI V G Sbjct: 387 EDPSLSVQWDEPAQAIHIHVMGIIQLEVLERIVFERFGYRIAFGEPEILYKETITEAVVG 446 Query: 422 CGHFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLLTG 481 GHFEPLKHYAEV LR+EPGER SG++F N CH D L YQH V Q++ E HHGLLTG Sbjct: 447 SGHFEPLKHYAEVHLRLEPGERNSGILFANACHPDMLPVNYQHLVAQHVGERDHHGLLTG 506 Query: 482 SPLTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTGDL 541 SP+TD+++TLL GRAHNKHTHGGDFREA RALRQGLE+ ++LLEP Y K+++D + Sbjct: 507 SPVTDMKITLLKGRAHNKHTHGGDFREATYRALRQGLEKTTSLLLEPYYHFKVKVDAEFI 566 Query: 542 GKVMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSLKV 601 G++M+D+ QA F PP E G K ++G PV+T + Y + LAA T+G+G +SL Sbjct: 567 GRLMSDLTQAKASFDPP----ETVGDKVTVTGSAPVSTMMKYGMELAAYTKGRGTISLVY 622 Query: 602 AEYQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMHI 653 Y CH VI K Y+K+ADP Y SSSIFCAK Y+VPWDEA HMH+ Sbjct: 623 GGYDRCHNEAEVIERKGYDKNADPEYSSSSIFCAKRSGYAVPWDEADRHMHV 674 >C1FQB0.1 C1FQB0_CLOBJ Tetracycline resistance protein TetP Length = 651 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/649 (53%), Positives = 476/649 (73%), Gaps = 5/649 (0%) Query: 5 TIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQAEFI 64 TIG+LAHVDAGKTTFAEQ+LYHT++I++RGRVDHK++FLD H+IEK RGITVF++Q F Sbjct: 4 TIGILAHVDAGKTTFAEQILYHTKSIKNRGRVDHKNSFLDNHKIEKERGITVFSEQGTFN 63 Query: 65 LGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHGIPTF 124 + Y+L+DTPGH+DFS EMERA+QV+DYAV+I+S VEG++GHTETVW LLR H IP Sbjct: 64 YKDSTYYLIDTPGHMDFSSEMERAIQVMDYAVIIISGVEGIQGHTETVWNLLRKHNIPVL 123 Query: 125 FFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGK-ISEELKVFLAERDERLLDAYL 183 FFINK DR GA+PQ V EEI+ + +L+ +S + +S EL F+A++DE LL+ YL Sbjct: 124 FFINKIDRVGANPQNVIEEIKLNFTKKTFLIDKSLSNEELSSELIEFIADQDEYLLEKYL 183 Query: 184 EGSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLPFAGR 243 E + W ++++ +++ IFPC GSALQD+GI+ FL+ L LT T+Y+ F+GR Sbjct: 184 EDDYDKDLWLKSMKKLIKSSEIFPCFLGSALQDIGIEDFLENLHILTYTEYNEEEKFSGR 243 Query: 244 VYKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASVDWAA 303 VYKIRHDE+ R+TYIKAL G LKV++E+ E+ +++ IR NG KY ++D A Sbjct: 244 VYKIRHDEQNNRVTYIKALSGSLKVKDEIALPNIENDFCKKVNEIRIYNGDKYINIDKAE 303 Query: 304 AGELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLLGAED 363 AG++FAVTGL++V GDG+G+L+D+ +VPTLKS+V+F+ +++K+VL F++L AED Sbjct: 304 AGQIFAVTGLNSVNVGDGIGILKDKATYNMVPTLKSKVIFDETLNVKDVLRYFKILEAED 363 Query: 364 PSLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPVYGCG 423 PSLN+ W+ QE+ + +MG IQLE+L+ ++ ERF I + FGP EILYKETI + G G Sbjct: 364 PSLNIIWNEKFQEIQVYIMGIIQLEVLKNLMEERFHILIDFGPCEILYKETILDTIIGYG 423 Query: 424 HFEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLLTGSP 483 HFEPL HY+EV L++EPGER SG+ F N CHTDDL G Q+ V ++ E HHG+LTGSP Sbjct: 424 HFEPLGHYSEVHLKLEPGERNSGITFENLCHTDDLTVGNQNLVKTHIFERDHHGILTGSP 483 Query: 484 LTDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTGDLGK 543 +TD+++TLL+GRAHNKHT GGDFREA RALRQGLE+A+N+LLEP Y K+ + +G+ Sbjct: 484 ITDIKITLLTGRAHNKHTSGGDFREATFRALRQGLEKAKNVLLEPCYSFKMEVPLDCMGR 543 Query: 544 VMTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSLKVAE 603 V++DIQ+ G F+PP E KA+I GK VATF+NY+V + T+GKG + Sbjct: 544 VLSDIQKLKGSFNPP----ETIDNKAIIKGKGSVATFMNYSVEFISFTKGKGKFNFIFDG 599 Query: 604 YQPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMH 652 Y CH + VI Y+K+AD Y S+SIFC+KGQ++ V +DEA+ +MH Sbjct: 600 YDICHNEKEVIEKIGYDKNADIEYTSTSIFCSKGQAFLVKYDEAENYMH 648 >C1I503.1 C1I503_9CLOT Putative uncharacterized protein Length = 650 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/648 (52%), Positives = 475/648 (73%), Gaps = 6/648 (0%) Query: 5 TIGLLAHVDAGKTTFAEQLLYHTRAIRSRGRVDHKDTFLDTHEIEKARGITVFADQAEFI 64 TIG+LAHVDAGKTTF+EQ+LYHT++IR+RGRVDHK++FLDTH+IEK RGITVF++QA F Sbjct: 4 TIGILAHVDAGKTTFSEQILYHTKSIRNRGRVDHKNSFLDTHDIEKERGITVFSEQATFQ 63 Query: 65 LGGTRYFLLDTPGHVDFSPEMERALQVLDYAVVIVSAVEGVEGHTETVWQLLRNHGIPTF 124 +G + Y+L+DTPGH+DFS EMERAL +LDYA++++S VEG++GHTET+W LLR + IPTF Sbjct: 64 IGSSTYYLIDTPGHIDFSTEMERALSILDYAILLISGVEGIQGHTETIWNLLRKYNIPTF 123 Query: 125 FFINKTDRTGADPQRVFEEIRSGLSSSAWLLPQSECGKISEELKVFLAERDERLLDAYLE 184 FINK DRTGAD +R EEI L+ + +SEEL F++ER+E LL+ Y Sbjct: 124 IFINKMDRTGADLERTLEEINENLTKDICHIDS--IHGMSEELIEFISERNEDLLERYFN 181 Query: 185 GSLNDTGWREALRSMVREGTIFPCMEGSALQDVGIDVFLDVLKSLTVTDYDAGLPFAGRV 244 G+ +T W L+ +++E +FPC+ GSALQD GID FL++ LT T+YD F+GRV Sbjct: 182 GTYEETIWITELKKLIKENKVFPCLSGSALQDEGIDNFLNIFNELTYTNYDEDDEFSGRV 241 Query: 245 YKIRHDEKGTRITYIKALQGVLKVREELKYGASEDAEPERITGIRKVNGLKYASVDWAAA 304 +KIR+D GTRIT+IKA+ G LKVR+E+ Y ++ E+++ IR NG K+ +V+ +A Sbjct: 242 HKIRYDNNGTRITFIKAISGSLKVRDEVTYETLDEEIAEKVSSIRFYNGSKFTTVEKISA 301 Query: 305 GELFAVTGLSAVRPGDGVGVLQDRRDSELVPTLKSRVLFEPPVHLKEVLTAFQLLGAEDP 364 G++FAVTG++ PG+G+G ++ ++PTL S+V+F+ ++KEVL F++L +EDP Sbjct: 302 GDIFAVTGITKAMPGEGIGKNRENIKFNMIPTLMSKVIFDKSYNVKEVLGYFRILESEDP 361 Query: 365 SLNVSWDMTLQELHIQVMGQIQLEILEQILRERFMIPVAFGPPEILYKETIAAPVYGCGH 424 +LN+ W+ T QE+ + +MG+IQLE+L+++ RF + + FGP EI+YKETI + YG GH Sbjct: 362 ALNIIWNETHQEIQVSIMGKIQLEVLKEVALNRFNLKIEFGPCEIMYKETIDSKTYGYGH 421 Query: 425 FEPLKHYAEVLLRIEPGERGSGLVFINECHTDDLAAGYQHQVGQYLLESGHHGLLTGSPL 484 FEPLKHYAEV L++EP +RG G+ F N+CH DDL G Q+ + ++ E HHGLLTGSP+ Sbjct: 422 FEPLKHYAEVHLKMEPNKRGEGITFENKCHADDLTTGNQNLIKTHIFERNHHGLLTGSPI 481 Query: 485 TDLRMTLLSGRAHNKHTHGGDFREAALRALRQGLEQAENILLEPVYDLKIRIDTGDLGKV 544 TD+++TLL+GRAHNKHT GGDFREA R++RQGLE+A NILLEP Y KI ++ +GKV Sbjct: 482 TDMKITLLTGRAHNKHTEGGDFREATFRSIRQGLEKANNILLEPFYKFKIDVELDYMGKV 541 Query: 545 MTDIQQANGRFSPPXXXXEITGTKAVISGKVPVATFLNYAVRLAALTQGKGALSLKVAEY 604 ++DIQ+ NG F PP E K I+G+ PVATF++Y+ + T+GKG++SL Y Sbjct: 542 ISDIQRLNGSFDPP----ETKINKVSITGRGPVATFMDYSSEILTFTKGKGSVSLIFDGY 597 Query: 605 QPCHQTESVIALKNYNKDADPAYPSSSIFCAKGQSYSVPWDEAQAHMH 652 CH TE VI Y+K+AD Y SSSIFC+KGQ + V WD+ + ++H Sbjct: 598 DVCHNTEEVIEKIGYDKNADIEYSSSSIFCSKGQGFVVHWDKVEEYIH 645 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,928,421,986 Number of extensions: 168472471 Number of successful extensions: 430536 Number of sequences better than 1.0e-05: 11624 Number of HSP's gapped: 410443 Number of HSP's successfully gapped: 13766 Length of query: 659 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 516 Effective length of database: 1,713,491,058 Effective search space: 884161385928 Effective search space used: 884161385928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)