BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0337.0018.p
         (51 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KA17.1 B3KA17_9BACI Regulatory protein LuxR                          99   1e-19
B1D787.1 B1D787_9BACL Transcriptional regulator, LuxR family           95   2e-18
C0Z9K3.1 C0Z9K3_BREBN Germination protein                              91   4e-17
A6CSF7.1 A6CSF7_9BACI Transcriptional regulator                        88   2e-16
Q81LA2.1 Q81LA2_BACAN Germination protein GerE                         88   3e-16

>B3KA17.1 B3KA17_9BACI Regulatory protein LuxR
          Length = 74

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/51 (98%), Positives = 50/51 (98%)

Query: 1  VQDKTTRDIAGLLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 51
          VQDKTTRDIAG LFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI
Sbjct: 24 VQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 74


>B1D787.1 B1D787_9BACL Transcriptional regulator, LuxR family
          Length = 74

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 1  VQDKTTRDIAGLLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 51
          VQDKTTRDIA  LFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGEL+I
Sbjct: 24 VQDKTTRDIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELQI 74


>C0Z9K3.1 C0Z9K3_BREBN Germination protein
          Length = 76

 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 49/51 (96%)

Query: 1  VQDKTTRDIAGLLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 51
          VQDKTT++IAG LFISEKTVRNHISNVMQKL VKGRSQAVVEL++LGEL+I
Sbjct: 26 VQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLGELEI 76


>A6CSF7.1 A6CSF7_9BACI Transcriptional regulator
          Length = 74

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 48/51 (94%)

Query: 1  VQDKTTRDIAGLLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 51
          VQDKTT++IAG LFISEKTVRNHISN MQKL VKGRSQAVVEL+++GELK+
Sbjct: 24 VQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGELKL 74


>Q81LA2.1 Q81LA2_BACAN Germination protein GerE
          Length = 74

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 48/51 (94%)

Query: 1  VQDKTTRDIAGLLFISEKTVRNHISNVMQKLNVKGRSQAVVELIKLGELKI 51
          VQDKTT++IAG LFISEKTVRNHISN MQKL VKGRSQAVVEL+++GEL++
Sbjct: 24 VQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGELEL 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.134    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 223,496,069
Number of extensions: 4898149
Number of successful extensions: 26971
Number of sequences better than 1.0e-05: 126
Number of HSP's gapped: 26974
Number of HSP's successfully gapped: 126
Length of query: 51
Length of database: 3,060,696,203
Length adjustment: 24
Effective length of query: 27
Effective length of database: 2,834,591,843
Effective search space: 76533979761
Effective search space used: 76533979761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)