BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0011.p (253 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D538.1 B1D538_9BACL ABC transporter related 439 e-122 B9DWS8.1 B9DWS8_CLOK1 Putative uncharacterized protein 435 e-120 A5N329.1 A5N329_CLOK5 Predicted ABC transporter, ATPase component 435 e-120 C4EAE7.1 C4EAE7_STRRS ABC-type multidrug transport system, ATPas... 395 e-108 C2N3Q6.1 C2N3Q6_BACCE ABC transporter 386 e-106 >B1D538.1 B1D538_9BACL ABC transporter related Length = 253 Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/253 (83%), Positives = 241/253 (95%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 MQTKSIQVKGL+KSY+QL+VLKGVDFEVE+GSIFALLGSNGAGKTTVVKIL+TLL D G Sbjct: 1 MQTKSIQVKGLRKSYKQLEVLKGVDFEVEQGSIFALLGSNGAGKTTVVKILTTLLAADGG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 T +VNGFDV+++ +VRQSISLTGQFAAVDEILTGRENLIMIA+LR+L +PRQVA+D+L+ Sbjct: 61 TAAVNGFDVSSQQDEVRQSISLTGQFAAVDEILTGRENLIMIAKLRYLKNPRQVAEDMLK 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RFGLT+AADR+AS YSGGMRRRLDIA+SLVG P++IFLDEPTTGLDPEARIE WK+VKEL Sbjct: 121 RFGLTEAADRRASTYSGGMRRRLDIALSLVGNPKIIFLDEPTTGLDPEARIEVWKVVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 ADGGTTV LTTQYLEEAEQLADRIAILH+GRIIA+GTL++LKKLFP+ KVEY+EKQP+LE Sbjct: 181 ADGGTTVLLTTQYLEEAEQLADRIAILHQGRIIANGTLSDLKKLFPTTKVEYIEKQPSLE 240 Query: 241 EIFLAIIGKKEAV 253 EIFL+IIGKKEA+ Sbjct: 241 EIFLSIIGKKEAM 253 >B9DWS8.1 B9DWS8_CLOK1 Putative uncharacterized protein Length = 252 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/248 (85%), Positives = 230/248 (92%) Query: 4 KSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSGTVS 63 K+IQVKGLQKSY++ VLKGVDFEVEKGSIFALLGSNGAGKTT+VKIL+TLLK DSG + Sbjct: 3 KAIQVKGLQKSYKKFHVLKGVDFEVEKGSIFALLGSNGAGKTTIVKILTTLLKQDSGAAT 62 Query: 64 VNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLRRFG 123 VNGFDVAA+P VRQSISLTGQFAAVDEILTGRENLIMIA+LRHL +PRQ+ADDLL+RFG Sbjct: 63 VNGFDVAARPDYVRQSISLTGQFAAVDEILTGRENLIMIAKLRHLANPRQIADDLLKRFG 122 Query: 124 LTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKELADG 183 L DA DR+ S YSGGM RRLDIAMSL+G PQLIFLDEPTTGLDPEARI+ WK VKELA+G Sbjct: 123 LIDAGDRRVSTYSGGMHRRLDIAMSLIGNPQLIFLDEPTTGLDPEARIKVWKTVKELAEG 182 Query: 184 GTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLEEIF 243 GTTVFLTTQYLEEAEQLADRIAILHEG+IIA+GTL ELK+LFP AKVEYVEKQPTLEEIF Sbjct: 183 GTTVFLTTQYLEEAEQLADRIAILHEGKIIANGTLDELKRLFPPAKVEYVEKQPTLEEIF 242 Query: 244 LAIIGKKE 251 LAIIGKKE Sbjct: 243 LAIIGKKE 250 >A5N329.1 A5N329_CLOK5 Predicted ABC transporter, ATPase component Length = 252 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/248 (85%), Positives = 230/248 (92%) Query: 4 KSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSGTVS 63 K+IQVKGLQKSY++ VLKGVDFEVEKGSIFALLGSNGAGKTT+VKIL+TLLK DSG + Sbjct: 3 KAIQVKGLQKSYKKFHVLKGVDFEVEKGSIFALLGSNGAGKTTIVKILTTLLKQDSGAAT 62 Query: 64 VNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLRRFG 123 VNGFDVAA+P VRQSISLTGQFAAVDEILTGRENLIMIA+LRHL +PRQ+ADDLL+RFG Sbjct: 63 VNGFDVAARPDYVRQSISLTGQFAAVDEILTGRENLIMIAKLRHLANPRQIADDLLKRFG 122 Query: 124 LTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKELADG 183 L DA DR+ S YSGGM RRLDIAMSL+G PQLIFLDEPTTGLDPEARI+ WK VKELA+G Sbjct: 123 LIDAGDRRVSTYSGGMHRRLDIAMSLIGNPQLIFLDEPTTGLDPEARIKVWKTVKELAEG 182 Query: 184 GTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLEEIF 243 GTTVFLTTQYLEEAEQLADRIAILHEG+IIA+GTL ELK+LFP AKVEYVEKQPTLEEIF Sbjct: 183 GTTVFLTTQYLEEAEQLADRIAILHEGKIIANGTLDELKRLFPPAKVEYVEKQPTLEEIF 242 Query: 244 LAIIGKKE 251 LAIIGKKE Sbjct: 243 LAIIGKKE 250 >C4EAE7.1 C4EAE7_STRRS ABC-type multidrug transport system, ATPase component Length = 275 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/248 (76%), Positives = 221/248 (89%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 +Q +I+V+GL+KSY++L+VL+GVDF+V +GSIFALLGSNGAGKTT VKILSTLLK D+G Sbjct: 6 VQGPAIRVQGLEKSYKELRVLRGVDFDVARGSIFALLGSNGAGKTTAVKILSTLLKADAG 65 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 T SVNGFDVA + DVR+SISLTGQFAAVDEIL+GRENL+++ARLRHL P ++ADDLL Sbjct: 66 TASVNGFDVATQAADVRESISLTGQFAAVDEILSGRENLVLVARLRHLKDPGKIADDLLD 125 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LTDA RKAS YSGGMRRRLDIAMSLVG P +IFLDEPTTGLDP+ARIE W+ V+EL Sbjct: 126 RFSLTDAGARKASTYSGGMRRRLDIAMSLVGNPPVIFLDEPTTGLDPQARIEVWQTVREL 185 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 AD GTTV LTTQYL+EAEQLADRIAILHEGRII +GTLAELK+L P AKVEYVEKQPTLE Sbjct: 186 ADRGTTVLLTTQYLDEAEQLADRIAILHEGRIIVNGTLAELKQLLPPAKVEYVEKQPTLE 245 Query: 241 EIFLAIIG 248 ++FL ++G Sbjct: 246 DVFLTLVG 253 >C2N3Q6.1 C2N3Q6_BACCE ABC transporter Length = 253 Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/251 (74%), Positives = 216/251 (86%) Query: 1 MQTKSIQVKGLQKSYRQLQVLKGVDFEVEKGSIFALLGSNGAGKTTVVKILSTLLKPDSG 60 M +I VKGL+KS++ +VLKG+DFEV++G IFALLGSNGAGKTT V ILSTL+K D G Sbjct: 1 MSHAAISVKGLKKSFKDKEVLKGIDFEVQRGEIFALLGSNGAGKTTTVNILSTLMKQDGG 60 Query: 61 TVSVNGFDVAAKPGDVRQSISLTGQFAAVDEILTGRENLIMIARLRHLDHPRQVADDLLR 120 VS+ GFDV +P VRQSISLTGQFAA+D +LTGRENLIMIARLR + +P QVAD+LL Sbjct: 61 EVSICGFDVQRQPNHVRQSISLTGQFAALDGMLTGRENLIMIARLRGVSNPAQVADNLLA 120 Query: 121 RFGLTDAADRKASVYSGGMRRRLDIAMSLVGKPQLIFLDEPTTGLDPEARIEAWKIVKEL 180 RF LTDAA+++A YSGGM+RRLDIAMSL+G P +IFLDEPTTGLDPEARIE W VKEL Sbjct: 121 RFSLTDAANQRADQYSGGMKRRLDIAMSLIGAPAVIFLDEPTTGLDPEARIEVWDTVKEL 180 Query: 181 ADGGTTVFLTTQYLEEAEQLADRIAILHEGRIIASGTLAELKKLFPSAKVEYVEKQPTLE 240 AD GTT+ LTTQYLEEAEQLADRIAILH G+II +GTLAELK++FP AKVEY+EKQPTLE Sbjct: 181 ADSGTTILLTTQYLEEAEQLADRIAILHGGKIITTGTLAELKEMFPPAKVEYIEKQPTLE 240 Query: 241 EIFLAIIGKKE 251 EIFLAIIGKKE Sbjct: 241 EIFLAIIGKKE 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,424,069,348 Number of extensions: 57634917 Number of successful extensions: 508215 Number of sequences better than 1.0e-05: 95299 Number of HSP's gapped: 388344 Number of HSP's successfully gapped: 104031 Length of query: 253 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 120 Effective length of database: 1,807,701,208 Effective search space: 216924144960 Effective search space used: 216924144960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)