BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0010.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8GGH3.1 B8GGH3_METPE Pentapeptide repeat protein 442 e-122 B1D539.1 B1D539_9BACL Pentapeptide repeat protein 427 e-118 Q0RMN1.1 Q0RMN1_FRAAA Putative uncharacterized protein 328 3e-88 A6M095.1 A6M095_CLOB8 Pentapeptide repeat protein 166 3e-39 A0YKR1.1 A0YKR1_9CYAN Putative uncharacterized protein 95 8e-18 >B8GGH3.1 B8GGH3_METPE Pentapeptide repeat protein Length = 290 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/290 (79%), Positives = 251/290 (86%), Gaps = 3/290 (1%) Query: 1 MYEKLTSYLNGVFAPYDGVKSATELKADLLSDLQERFRELKAEGKDDETAFEMTISSIGD 60 M EKLT+YLNGVFAPYDGVKS ELKADLLSDLQERFREL AEGKDD+TAF+MTI SIGD Sbjct: 1 MNEKLTNYLNGVFAPYDGVKSIDELKADLLSDLQERFRELIAEGKDDKTAFQMTIDSIGD 60 Query: 61 IEQTVQEVANLSRSLERQVVTNFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTG 120 IEQTV+E A LSRSLERQ++ NFS+SNL KSDFAGVTAHKGKFE SAL GSDFSGADLTG Sbjct: 61 IEQTVREAAGLSRSLERQLLINFSASNLLKSDFAGVTAHKGKFEASALRGSDFSGADLTG 120 Query: 121 SSFKASDVREAHFDGANLTDCNFFALDLAGASFRQSILVRTNFSKSWLAGANFIDAKLTD 180 S FKASDV EA+FDGANLTDC F LDLAGASF QSILVRTNFS S LAGA FID KLTD Sbjct: 121 SLFKASDVGEANFDGANLTDCTFSTLDLAGASFHQSILVRTNFSMSELAGAKFIDVKLTD 180 Query: 181 VNLTMCDLSKTIFENCIFDGVDFKSSNLTGLCLDGMTFLGVKFDKAALNEVSFKGATLKN 240 V++TM DL KTIFE+CIF+GVDFK +L GL LDG TF+GVKF +A LNEV+FKGATLKN Sbjct: 181 VSITMSDLRKTIFESCIFNGVDFKYCDLRGLSLDGQTFIGVKFGEAMLNEVTFKGATLKN 240 Query: 241 VSF-PTSNL--SKKYYRAIKTVCFDGAMMDKLTYAALKGMEADLSKVTVI 287 VSF P +L +KKYY AIKT+ FDG+MMDKLTY +LKGM ADLSKVTVI Sbjct: 241 VSFTPPFSLTKTKKYYNAIKTIRFDGSMMDKLTYNSLKGMGADLSKVTVI 290 >B1D539.1 B1D539_9BACL Pentapeptide repeat protein Length = 289 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 218/285 (76%), Positives = 240/285 (84%), Gaps = 1/285 (0%) Query: 4 KLTSYLNGVFAPYDGVKSATELKADLLSDLQERFRELKAEGKDDETAFEMTISSIGDIEQ 63 KL YLN VF PYDGVKS TELKADLLSDLQER+ ELKAEGKDDETAF+ TI SIGDIEQ Sbjct: 5 KLNDYLNSVFTPYDGVKSVTELKADLLSDLQERYNELKAEGKDDETAFKTTIESIGDIEQ 64 Query: 64 TVQEVANLSRSLERQVVTNFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTGSSF 123 T+ EVANLSRSLERQVVTNF+ SNL+ SDFAGV AHKG+F+GSAL GSDFSGADLTGSSF Sbjct: 65 TILEVANLSRSLERQVVTNFNGSNLADSDFAGVKAHKGQFKGSALHGSDFSGADLTGSSF 124 Query: 124 KASDVREAHFDGANLTDCNFFALDLAGASFRQSILVRTNFSKSWLAGANFIDAKLTDVNL 183 K+SDVR+A+FDGANLTDC+F ALDL ASF +S LVRTNFSKS L G F AKLTDV + Sbjct: 125 KSSDVRQANFDGANLTDCSFSALDLTNASFNKSTLVRTNFSKSGLDGVKFTGAKLTDVTM 184 Query: 184 TMCDLSKTIFENCIFDGVDFKSSNLTGLCLDGMTFLGVKFDKAALNEVSFKGATLKNVSF 243 T+ DL KT FE C+FDGVDFK S+LT C DG TF+GVKF+KAAL E SFKGAT KNVSF Sbjct: 185 TLTDLRKTKFEGCLFDGVDFKFSDLTKQCFDGQTFIGVKFEKAALTEASFKGATFKNVSF 244 Query: 244 -PTSNLSKKYYRAIKTVCFDGAMMDKLTYAALKGMEADLSKVTVI 287 P L+KKYYR IKTV FDGA MDKLT+A LKGM+ADLSKVTV+ Sbjct: 245 QPGFTLTKKYYRMIKTVNFDGATMDKLTFAHLKGMDADLSKVTVV 289 >Q0RMN1.1 Q0RMN1_FRAAA Putative uncharacterized protein Length = 285 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 168/286 (58%), Positives = 213/286 (74%), Gaps = 2/286 (0%) Query: 1 MYEKLTSYLNGVFAPYDGVKSATELKADLLSDLQERFRELKAEGKDDETAFEMTISSIGD 60 M + + Y++G+FAPY+ KS +ELKADLL+DLQERFREL+AEGKD+ AFE+T+ SIGD Sbjct: 1 MNDGIREYVDGIFAPYEDTKSLSELKADLLADLQERFRELRAEGKDEHAAFELTVDSIGD 60 Query: 61 IEQTVQEVANLSRSLERQVVTNFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTG 120 IE TVQE+++LSR LER++VT F +S+L KSDF+GV+ G+FE SAL GSDFS ADLTG Sbjct: 61 IENTVQEMSSLSRQLERKMVTRFDASDLRKSDFSGVSGRGGRFERSALRGSDFSHADLTG 120 Query: 121 SSFKASDVREAHFDGANLTDCNFFALDLAGASFRQSILVRTNFSKSWLAGANFIDAKLTD 180 SSF++SD+ EA+FDGANLTD N D ASF S LVRT+FS S LA F DA LTD Sbjct: 121 SSFRSSDLTEANFDGANLTDANLTMADFTRASFHGSQLVRTDFSTSGLAETRFTDAALTD 180 Query: 181 VNLTMCDLSKTIFENCIFDGVDFKSSNLTGLCLDGMTFLGVKFDKAALNEVSFKGATLKN 240 V+ L +T +C F GVDF ++L GL LDG TF+ V+FD AAL +VSF+GATL++ Sbjct: 181 VSFQKAYLRRTTLTHCTFTGVDFSYADLRGLNLDGGTFISVRFDMAALEDVSFRGATLRD 240 Query: 241 VSFPTSNLSKKYYRAIKTVCFDGAMMDKLTYAALKGMEADLSKVTV 286 VSF + S+KY AI+TV FDGA +DKLTYA LKG+ A++ V Sbjct: 241 VSFRGT--SRKYRNAIRTVNFDGARIDKLTYAGLKGLGANVDNAQV 284 >A6M095.1 A6M095_CLOB8 Pentapeptide repeat protein Length = 238 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/287 (37%), Positives = 146/287 (50%), Gaps = 49/287 (17%) Query: 1 MYEKLTSYLNGVFAPYDGVKSATELKADLLSDLQERFRELKAEGKDDETAFEMTISSIGD 60 M EKL +L+ +F PY+ + + E+K +L DLQE+ +LK G D++ A+ TI SIG+ Sbjct: 1 MSEKLRKHLDYIFTPYNDLMAVKEIKEELFIDLQEKLNDLKNNGYDEDEAYNKTIESIGE 60 Query: 61 IEQTVQEVANLSRSLERQVVTNFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTG 120 + + V+ + + +R L++ V +FS S L SDF GV GKF SAL ++FS ++L Sbjct: 61 VSEIVESITSKTRELQQLVGIDFSKSPLEDSDFKGVEIVNGKFNYSALKNANFSNSNLRD 120 Query: 121 SSFKASDVREAHFDGANLTDCNFFALDLAGASFRQSILVRTNFSKSWLAGANFIDAKLTD 180 SSFK SD+ A+FDGANL+ L GASF+ +IL T+FS S L+G Sbjct: 121 SSFKCSDLSNANFDGANLSGAKINKASLKGASFKDTILDNTDFSYSDLSG---------- 170 Query: 181 VNLTMCDLSKTIFENCIFDGVDFKSSNLTGLCLDGMTFLGVKFDKAALNEVSFKGATLKN 240 +C FDG L G D G F A L VSFK Sbjct: 171 ----LC-----------FDG-----QKLNGTIFDYSGLRGTSFKNAILRNVSFK------ 204 Query: 241 VSFPTSNLSKKYYRAIKTVCFDGAMMDKLTYAALKGMEADLSKVTVI 287 +K FDGA MDKLTYA LKG +A L VT+I Sbjct: 205 -------------TEVKKAIFDGATMDKLTYAILKGFKAKLDNVTII 238 >A0YKR1.1 A0YKR1_9CYAN Putative uncharacterized protein Length = 285 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 95/168 (56%), Gaps = 7/168 (4%) Query: 81 TNFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTGSSFKASDVREAHFDGANLTD 140 TNF NLS ++FAGV F GS L ++F G +LT ++F D+ +A+F GANLTD Sbjct: 100 TNFVGVNLSNTNFAGVDLIGANFFGSNLTDTNFVGVNLTNTNFAGVDLIDANFFGANLTD 159 Query: 141 CNFFALDLAGASFRQSILVRTNFSKSWLAGANFIDAKLTDVNLTMCDLSKTIFENCIFDG 200 NF ++L+ +F L+R NF + L +NF+ L++ NLT +L+ + F G Sbjct: 160 TNFVGVNLSNTNFAGVDLIRANFLGANLTESNFVGVNLSEANLTGVNLTDSNFI-----G 214 Query: 201 VDFKSSNLTGLCLDGMTFLGVKFDKAALN--EVSFKGATLKNVSFPTS 246 V+ +NLTG+ L G+ +GV LN +++ K A++ SF S Sbjct: 215 VNLSKANLTGVNLAGINLIGVNLTDTLLNGEKITDKIASVPEPSFLVS 262 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 25/187 (13%) Query: 82 NFSSSNLSKSDFAGVTAHKGKFEGSALLGSDFSGADLTGSSFKASDVREAHFDGANLTDC 141 NF+ NL ++F GV F G L G++F+G DL G++F+ ++ + +F G NL++ Sbjct: 51 NFAGLNLGGANFQGVNLSDTNFSGVNLGGANFAGVDLIGANFQGVNLNDTNFVGVNLSNT 110 Query: 142 NFFALDLAGASFRQSILVRTNF-----SKSWLAG-----ANFIDAKLTDVNLTMCDLSKT 191 NF +DL GA+F S L TNF + + AG ANF A LTD N +LS T Sbjct: 111 NFAGVDLIGANFFGSNLTDTNFVGVNLTNTNFAGVDLIDANFFGANLTDTNFVGVNLSNT 170 Query: 192 IFENC---------------IFDGVDFKSSNLTGLCLDGMTFLGVKFDKAALNEVSFKGA 236 F F GV+ +NLTG+ L F+GV KA L V+ G Sbjct: 171 NFAGVDLIRANFLGANLTESNFVGVNLSEANLTGVNLTDSNFIGVNLSKANLTGVNLAGI 230 Query: 237 TLKNVSF 243 L V+ Sbjct: 231 NLIGVNL 237 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 12/181 (6%) Query: 108 LLGSDFSGADLTGSSFKASDVREAHFDGANLTDCNFFALDLAGASFRQSILVRTNFSKSW 167 L G++ G +L G++F ++ A+F G NL+D NF ++L GA NF+ Sbjct: 37 LNGNNCVGCNLAGANFAGLNLGGANFQGVNLSDTNFSGVNLGGA----------NFAGVD 86 Query: 168 LAGANFIDAKLTDVNLTMCDLSKTIFENCIFDGVDFKSSNLTGLCLDGMTFLGVKFDKAA 227 L GANF L D N +LS T F G +F SNLT G+ F Sbjct: 87 LIGANFQGVNLNDTNFVGVNLSNTNFAGVDLIGANFFGSNLTDTNFVGVNLTNTNFAGVD 146 Query: 228 LNEVSFKGATLKNVSFPTSNLSKKYYRAIKTV--CFDGAMMDKLTYAALKGMEADLSKVT 285 L + +F GA L + +F NLS + + + F GA + + + + EA+L+ V Sbjct: 147 LIDANFFGANLTDTNFVGVNLSNTNFAGVDLIRANFLGANLTESNFVGVNLSEANLTGVN 206 Query: 286 V 286 + Sbjct: 207 L 207 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 22/164 (13%) Query: 105 GSALLGSDFSGADLTGSSFKASDVREAHFDGANLTDCNFFALDLAGASFRQSI------- 157 G L G++F+G +L G++F+ ++ + +F G NL NF +DL GA+F Q + Sbjct: 44 GCNLAGANFAGLNLGGANFQGVNLSDTNFSGVNLGGANFAGVDLIGANF-QGVNLNDTNF 102 Query: 158 ----LVRTNFSKSWLAGANFIDAKLTDVNLTMCDLSKTIFENCIFDGVDFKSSNLTGLCL 213 L TNF+ L GANF + LTD N +L+ T F GVD +N G L Sbjct: 103 VGVNLSNTNFAGVDLIGANFFGSNLTDTNFVGVNLTNTNFA-----GVDLIDANFFGANL 157 Query: 214 DGMTFLGVKFDKAALNEVSFKGATLKNVSFPTSNLSKKYYRAIK 257 F+GV L+ +F G L +F +NL++ + + Sbjct: 158 TDTNFVGVN-----LSNTNFAGVDLIRANFLGANLTESNFVGVN 196 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,483,747,409 Number of extensions: 56543524 Number of successful extensions: 229256 Number of sequences better than 1.0e-05: 1054 Number of HSP's gapped: 213270 Number of HSP's successfully gapped: 2321 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)