BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0337.0009.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D540.1 B1D540_9BACL Transcriptional regulator, PadR-like family     209   1e-52
B8GGH4.1 B8GGH4_METPE Transcriptional regulator, PadR-like family     203   5e-51
Q0RMN0.1 Q0RMN0_FRAAA Putative PadR family transcriptional regul...   191   2e-47
A6M096.1 A6M096_CLOB8 Transcriptional regulator, PadR-like family     140   3e-32
Q8ET68.1 Q8ET68_OCEIH Hypothetical conserved protein                  136   6e-31

>B1D540.1 B1D540_9BACL Transcriptional regulator, PadR-like family
          Length = 109

 Score =  209 bits (531), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 13  MSENKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLE 72
           MSENKITSDLLRGHTDTM+LRLLSEADRYGYEIVKLIAERS+GEYELKEATMYSS RRLE
Sbjct: 1   MSENKITSDLLRGHTDTMVLRLLSEADRYGYEIVKLIAERSEGEYELKEATMYSSFRRLE 60

Query: 73  ADGDIEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           ADGDIEWYWGDESQGGRRKYFRITEKGK  Y RNKSNWEYAKRVLENLL
Sbjct: 61  ADGDIEWYWGDESQGGRRKYFRITEKGKETYIRNKSNWEYAKRVLENLL 109


>B8GGH4.1 B8GGH4_METPE Transcriptional regulator, PadR-like family
          Length = 109

 Score =  203 bits (516), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/109 (91%), Positives = 104/109 (95%)

Query: 13  MSENKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLE 72
           MSENKITSDLLRGHTDTM+LRLLS+ADRYGYEIVKLIAERS GEYELKEATMYSSVRRLE
Sbjct: 1   MSENKITSDLLRGHTDTMVLRLLSKADRYGYEIVKLIAERSGGEYELKEATMYSSVRRLE 60

Query: 73  ADGDIEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           ADGDIEWYWGDESQGGRRKYFRITEKG+A YA NK NWEYAKRVL+ LL
Sbjct: 61  ADGDIEWYWGDESQGGRRKYFRITEKGRATYASNKGNWEYAKRVLDKLL 109


>Q0RMN0.1 Q0RMN0_FRAAA Putative PadR family transcriptional regulator
          Length = 109

 Score =  191 bits (485), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/109 (84%), Positives = 102/109 (93%)

Query: 13  MSENKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLE 72
           MS+ K+TSDLLRG+TDTMILRLLSE+DRYGYEIVKLIAERS GEYELKEATMYSSVRRLE
Sbjct: 1   MSDRKVTSDLLRGNTDTMILRLLSESDRYGYEIVKLIAERSQGEYELKEATMYSSVRRLE 60

Query: 73  ADGDIEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           ADGDI WYWGDE+QGGRRKYFRITEKG+  Y RNK+NW++AKRVL+ LL
Sbjct: 61  ADGDITWYWGDETQGGRRKYFRITEKGRQTYLRNKANWDHAKRVLDTLL 109


>A6M096.1 A6M096_CLOB8 Transcriptional regulator, PadR-like family
          Length = 109

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 88/109 (80%)

Query: 13  MSENKITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLE 72
           M  +KI+SDL+RGH DT+IL+LL   D+YGYEI + +   S+GEYELKEATMYSS++RLE
Sbjct: 1   MLNSKISSDLVRGHIDTIILKLLLGGDKYGYEISRTVHSASNGEYELKEATMYSSLKRLE 60

Query: 73  ADGDIEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           ++  +  YWG+E+QGGRRKY++IT+KGK  Y  NK NWE AK++L+NL+
Sbjct: 61  SEACVMSYWGEETQGGRRKYYKITDKGKELYIENKKNWENAKKILDNLI 109


>Q8ET68.1 Q8ET68_OCEIH Hypothetical conserved protein
          Length = 111

 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 83/105 (79%)

Query: 17  KITSDLLRGHTDTMILRLLSEADRYGYEIVKLIAERSDGEYELKEATMYSSVRRLEADGD 76
           ++++DLLRGHTDT++L +L   D YGYEI K I ER+DG Y+LKEAT+YSS +RLE DG 
Sbjct: 4   RVSADLLRGHTDTIVLGILMNKDNYGYEIYKTILERTDGLYQLKEATLYSSYKRLEKDGL 63

Query: 77  IEWYWGDESQGGRRKYFRITEKGKAAYARNKSNWEYAKRVLENLL 121
           I  YWGDESQGGRRKY+RIT+ GK  Y +NK +WE+ +++L  LL
Sbjct: 64  IIAYWGDESQGGRRKYYRITDSGKERYRQNKVDWEFTQKILNQLL 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 718,418,388
Number of extensions: 26468868
Number of successful extensions: 56279
Number of sequences better than 1.0e-05: 565
Number of HSP's gapped: 56782
Number of HSP's successfully gapped: 565
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)