BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0004.p (361 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4V2C4.1 C4V2C4_9FIRM ABC superfamily ATP binding cassette trans... 199 3e-49 B7AZB1.1 B7AZB1_9FIRM Putative uncharacterized protein 187 1e-45 B2RJ31.1 B2RJ31_PORG3 Putative uncharacterized protein 166 2e-39 Q7MUV1.1 Q7MUV1_PORGI ABC transporter, periplasmic substrate-bin... 166 2e-39 C3J7U1.1 C3J7U1_9PORP Putative ABC transporter, periplasmic subs... 162 4e-38 >C4V2C4.1 C4V2C4_9FIRM ABC superfamily ATP binding cassette transporter, substrate-binding protein Length = 313 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 151/253 (59%), Gaps = 1/253 (0%) Query: 91 DAIPFIIAHEQGFDKEHNVNLEIQTFKSAKDRDVAFQAGKVDGISADLVAISIYNEAGLD 150 D+IPFIIA E+G+ E V +E+Q FKSA DRD A Q+G +DG +DL+A+ G D Sbjct: 42 DSIPFIIAAERGYFAEEGVEVELQPFKSAMDRDAALQSGNLDGAVSDLLAVIFARSGGFD 101 Query: 151 VKITSTTTGEFDLLTGND-GVQEVKDLKGKTVILSKNTSTQYTVAMMLKQAGLTEEDIKV 209 V+ S T G ++L+ + G+ DL+GK + +SKNT +Y +L G+ EED+ Sbjct: 102 VRAVSYTDGNYNLVASDGAGIASPADLRGKEIAVSKNTIIEYVTDEILAANGMREEDVAK 161 Query: 210 TEVPQIPTRLELLKNQKADAAVLPEPYVTMGKAAGLRVLSSTKTAGINPFVLAFPQSVID 269 +PQIP RLE+L++ AAVLPEP ++ A+G + + GINP V+ F +S + Sbjct: 162 VVIPQIPVRLEMLRSGNLGAAVLPEPMASVAAASGSHYVIGSGDLGINPGVIVFSKSALQ 221 Query: 270 AKGQAIQDMYAAYDEAVAYMKSHDQSEYIDLIIKEVGYPDTLKDQITVPEYLPANQVDVK 329 K ++++ MY AY++AV Y+ + QSEY+DL+++ G+P +D + +P Y A Sbjct: 222 DKEKSVRAMYRAYNKAVDYLNNTPQSEYLDLVVERSGFPPAARDVLVLPSYRHAGSPAEP 281 Query: 330 EVEAAFAWAREKG 342 +V A W KG Sbjct: 282 DVTEAVRWVTSKG 294 >B7AZB1.1 B7AZB1_9FIRM Putative uncharacterized protein Length = 318 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 156/265 (58%), Gaps = 1/265 (0%) Query: 91 DAIPFIIAHEQGFDKEHNVNLEIQTFKSAKDRDVAFQAGKVDGISADLVAISIYNEAGLD 150 D++PF+IA E+G+ + + ++++ FKSA DRD A Q+G +DG +D++A + + G D Sbjct: 48 DSLPFLIAEEKGYFADEGLEVDLKQFKSAMDRDSALQSGNLDGAVSDMLAAAFAKDGGFD 107 Query: 151 VKITSTTTGEFDLLTG-NDGVQEVKDLKGKTVILSKNTSTQYTVAMMLKQAGLTEEDIKV 209 VK+TS T G + L+ G +G +VK L+GK V +S+NT +Y +L + GL EDI Sbjct: 108 VKVTSATDGSYKLVAGKTEGAVDVKGLQGKDVSVSRNTIIEYVTDEILAKDGLKGEDINK 167 Query: 210 TEVPQIPTRLELLKNQKADAAVLPEPYVTMGKAAGLRVLSSTKTAGINPFVLAFPQSVID 269 +PQIPTRLE+L+N K AA LPEP ++ G ++ S+ GINP ++ F Sbjct: 168 VIIPQIPTRLEMLQNGKLAAATLPEPMASIAIHNGAHLVKSSDDLGINPGIILFTDKAAK 227 Query: 270 AKGQAIQDMYAAYDEAVAYMKSHDQSEYIDLIIKEVGYPDTLKDQITVPEYLPANQVDVK 329 K + IQ MY AY+ AV Y+ + + +YID +I++ G+P K+ + +P Y A + Sbjct: 228 DKQKEIQAMYRAYNRAVDYLNTAPREDYIDFVIEKAGFPAAAKEALKLPTYHKAALPKEQ 287 Query: 330 EVEAAFAWAREKGLLTKNIPAEEVI 354 +V W K L+ + ++++ Sbjct: 288 DVTDCIKWLNAKDLVKETYGYDDLV 312 >B2RJ31.1 B2RJ31_PORG3 Putative uncharacterized protein Length = 312 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 151/267 (56%), Gaps = 1/267 (0%) Query: 89 SIDAIPFIIAHEQGFDKEHNVNLEIQTFKSAKDRDVAFQAGKVDGISADLVAISIYNEAG 148 S+D +PF++A + G + LEI F S +RD AF +G V+G D ++ G Sbjct: 45 SMDYLPFVVAQKTGIYDSLGLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGG 104 Query: 149 LDVKITSTTTGEFDLLTGNDGVQE-VKDLKGKTVILSKNTSTQYTVAMMLKQAGLTEEDI 207 +D+++ G F L+ D E ++ LKGK + +S+NT +YT ++ AGL E +I Sbjct: 105 IDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEI 164 Query: 208 KVTEVPQIPTRLELLKNQKADAAVLPEPYVTMGKAAGLRVLSSTKTAGINPFVLAFPQSV 267 TEV +IP RLE+L++ + DAAVLP+P++T+ A G+ L ST+ GI F SV Sbjct: 165 TKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSV 224 Query: 268 IDAKGQAIQDMYAAYDEAVAYMKSHDQSEYIDLIIKEVGYPDTLKDQITVPEYLPANQVD 327 I K +AI + YD AV Y+ SHD+ +++I++VG P+ L D + +P+Y + Sbjct: 225 IREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPT 284 Query: 328 VKEVEAAFAWAREKGLLTKNIPAEEVI 354 +++++ W K L+ + +++I Sbjct: 285 IEDLQQTIDWLHAKKLVPSDYTGKDLI 311 >Q7MUV1.1 Q7MUV1_PORGI ABC transporter, periplasmic substrate-binding protein, putative Length = 312 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 151/267 (56%), Gaps = 1/267 (0%) Query: 89 SIDAIPFIIAHEQGFDKEHNVNLEIQTFKSAKDRDVAFQAGKVDGISADLVAISIYNEAG 148 S+D +PF++A + G + LEI F S +RD AF +G V+G D ++ G Sbjct: 45 SMDYLPFVVAQKTGIYDSLRLKLEIVKFYSPNERDAAFHSGNVEGTVIDYTGAAMQQAGG 104 Query: 149 LDVKITSTTTGEFDLLTGNDGVQE-VKDLKGKTVILSKNTSTQYTVAMMLKQAGLTEEDI 207 +D+++ G F L+ D E ++ LKGK + +S+NT +YT ++ AGL E +I Sbjct: 105 IDLQLVMRLDGYFRLVMSKDYTGESLETLKGKNLGISRNTVIEYTTDRIINTAGLDESEI 164 Query: 208 KVTEVPQIPTRLELLKNQKADAAVLPEPYVTMGKAAGLRVLSSTKTAGINPFVLAFPQSV 267 TEV +IP RLE+L++ + DAAVLP+P++T+ A G+ L ST+ GI F SV Sbjct: 165 TKTEVNKIPLRLEMLRSGQIDAAVLPDPFITIAMADGMMSLVSTQDLGIFVTGAMFAGSV 224 Query: 268 IDAKGQAIQDMYAAYDEAVAYMKSHDQSEYIDLIIKEVGYPDTLKDQITVPEYLPANQVD 327 I K +AI + YD AV Y+ SHD+ +++I++VG P+ L D + +P+Y + Sbjct: 225 IREKQEAIDILLRGYDLAVDYILSHDRKAIRNILIEDVGVPEPLVDDVILPDYTHGQKPT 284 Query: 328 VKEVEAAFAWAREKGLLTKNIPAEEVI 354 +++++ W K L+ + +++I Sbjct: 285 IEDLQQTIDWLHAKKLVPSDYTGKDLI 311 >C3J7U1.1 C3J7U1_9PORP Putative ABC transporter, periplasmic substrate-binding protein Length = 314 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/267 (32%), Positives = 150/267 (56%), Gaps = 2/267 (0%) Query: 89 SIDAIPFIIAHEQGFDKEHNVNLEIQTFKSAKDRDVAFQAGKVDGISADLVAISIYNEAG 148 S+D +PF +A ++G ++L ++ F S +RD A Q G +DG D + ++ N A Sbjct: 48 SVDYLPFAVALDKGIYDSLGLDLRLEHFFSPVERDAALQGGVLDGAVTDYTSAALLNAAQ 107 Query: 149 LDVKITSTTTGEFDLLTG-NDGVQEVKDLKGKTVILSKNTSTQYTVAMMLKQAGLTEEDI 207 L + + G F L+ G + ++DLKGK + LS NT +YT +L QAG+ E++ Sbjct: 108 LPIVLDMKCDGAFRLIVGQGKSISSLQDLKGKKLALSSNTVIEYTTDKLLDQAGIAPEEV 167 Query: 208 KVTEVPQIPTRLELLKNQKADAAVLPEPYVTMGKAAGLRVLSSTKTAGINPFVLAFPQSV 267 + E+ +IP RLE+L+N + DAAVLPEP+ TM +GL L STK GIN +A + Sbjct: 168 EKVEIVKIPLRLEMLRNGEVDAAVLPEPFATMALESGLTSLISTKELGINLTGIALTREA 227 Query: 268 IDAKGQAIQDMYAAYDEAVAYMKSHDQSEYIDLIIKEVGYPDTLKDQITVPEYLPANQVD 327 + K +A+ ++ Y+ V YM+ H + E++ ++I E+G +T + +P++ P Sbjct: 228 SERK-EAVNLLHQGYNLGVQYMQQHPREEWVKVLISELGISETAALVMELPDFTPVATPT 286 Query: 328 VKEVEAAFAWAREKGLLTKNIPAEEVI 354 +E+E W + K L+ + ++++ Sbjct: 287 PQELEEMNRWLKSKKLVDEGYSTQQLL 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,783,001,921 Number of extensions: 66444210 Number of successful extensions: 169758 Number of sequences better than 1.0e-05: 153 Number of HSP's gapped: 170125 Number of HSP's successfully gapped: 153 Length of query: 361 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 224 Effective length of database: 1,770,017,148 Effective search space: 396483841152 Effective search space used: 396483841152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)