BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0337.0002.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7AZB3.1 B7AZB3_9FIRM Putative uncharacterized protein 196 1e-48 C4V0V0.1 C4V0V0_9FIRM ABC superfamily ATP binding cassette trans... 190 8e-47 C3J7T9.1 C3J7T9_9PORP ABC transporter, permease protein 166 1e-39 B2RJ33.1 B2RJ33_PORG3 Probable ABC transporter permease protein 163 2e-38 A8U6Z2.1 A8U6Z2_9LACT Putative uncharacterized protein 156 2e-36 >B7AZB3.1 B7AZB3_9FIRM Putative uncharacterized protein Length = 249 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 144/227 (63%) Query: 24 WYIAYLLMHHPILPSPGAVYEAMFQLGAKDVALNVGYSLLRIFEGVXXXXXXXXXXXXXM 83 W+ LL+ PI+P+P V + + ++D+ + +SL RI G+ M Sbjct: 22 WWAIALLLALPIVPTPDKVLVRLAHIFSRDIFAHAAWSLWRIAAGLGLAVCVGYPLGVLM 81 Query: 84 GRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVIISVRDGV 143 G +R L PVVYLTYPIPKIALLP++ML G+GE SK+LMI LI++FQVI++VRD + Sbjct: 82 GYFRRADRYLSPVVYLTYPIPKIALLPILMLLAGVGELSKILMIFLIIVFQVIVAVRDAI 141 Query: 144 KAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTEIYGTEHG 203 + +PE Y L S+GAS Q F V LP +L ++ +R+++ TA+SVLFFTE +GT++G Sbjct: 142 RTLPEERYAPLYSLGASFAQVFRFVILPASLPKFITAVRVAMATAVSVLFFTETFGTQYG 201 Query: 204 MGFFIMDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDVMDYKFMKWRR 250 MG++IMDAWLR++Y EMYAGI+ DV + +W+R Sbjct: 202 MGYYIMDAWLRVNYLEMYAGILVLSAMGLLLFGLIDVFERAACRWQR 248 >C4V0V0.1 C4V0V0_9FIRM ABC superfamily ATP binding cassette transporter permease protein Length = 248 Score = 190 bits (483), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 146/229 (63%) Query: 22 LVWYIAYLLMHHPILPSPGAVYEAMFQLGAKDVALNVGYSLLRIFEGVXXXXXXXXXXXX 81 L+W A L P++PSP V+ + +A++ YSL+RI GV Sbjct: 19 LLWAGAAELFQKPVIPSPVQVFFRLTATFTGTIAIHAAYSLMRIAVGVLVAVAVGYPLGI 78 Query: 82 XMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVIISVRD 141 MG N LL P++YLTYPIPKIALLP+VML FG+GETSK+L++ LI++FQVI++VRD Sbjct: 79 LMGYFRRVNHLLAPILYLTYPIPKIALLPIVMLLFGVGETSKLLLVFLIIVFQVIVTVRD 138 Query: 142 GVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTEIYGTE 201 V AIP +TY L +GAS GQ ++ +P +L ++ +R+++ TAISVLFFTE +GT+ Sbjct: 139 AVAAIPPATYFPLRVLGASFGQMVRHIIVPASLPKFITAVRVAMATAISVLFFTETFGTQ 198 Query: 202 HGMGFFIMDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDVMDYKFMKWRR 250 +G+G++IMDAWLR++Y +MYAGI+ D+ + + W R Sbjct: 199 YGIGYYIMDAWLRVNYLDMYAGIVVLSAIGLLLFILLDLAERRLCAWNR 247 >C3J7T9.1 C3J7T9_9PORP ABC transporter, permease protein Length = 252 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 137/222 (61%) Query: 29 LLMHHPILPSPGAVYEAMFQLGAKDVALNVGYSLLRIFEGVXXXXXXXXXXXXXMGRSPL 88 L+M +LP+P AVY M + +A ++ SL RI G+ M R Sbjct: 29 LVMQKALLPTPWAVYTHMPTAWQEGMAGHLTASLGRIGVGLALALLIALIIALAMHRYRH 88 Query: 89 WNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVIISVRDGVKAIPE 148 + ++ + +Y +YPIPK+ALLP+VML GLGE +K++MI+LI+LFQ+I+S+RD + AIP+ Sbjct: 89 FGKVFNAFIYFSYPIPKLALLPIVMLLGGLGEGTKIIMILLIVLFQLIVSLRDALAAIPK 148 Query: 149 STYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTEIYGTEHGMGFFI 208 Y V+ S+GAST ++ LP + +LS +RI++GTA+SVLF TE YGT GMG++I Sbjct: 149 DNYIVMHSLGASTPAMLRHLLLPALVPALLSALRIAIGTAVSVLFVTETYGTSRGMGYYI 208 Query: 209 MDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDVMDYKFMKWRR 250 ++AW+R+DY +MYAGI D +Y WRR Sbjct: 209 VNAWMRVDYLDMYAGIAFLGATGFLLFVLTDCAEYLLAPWRR 250 >B2RJ33.1 B2RJ33_PORG3 Probable ABC transporter permease protein Length = 249 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 141/227 (62%) Query: 24 WYIAYLLMHHPILPSPGAVYEAMFQLGAKDVALNVGYSLLRIFEGVXXXXXXXXXXXXXM 83 WY A LL++ P+L +P VY + + + ++ ++ SLLRI G+ M Sbjct: 22 WYPAALLLNTPVLVNPLTVYSQIGTVWQQSMSAHLMASLLRIVIGISIALVLGFMVALSM 81 Query: 84 GRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGETSKVLMIMLILLFQVIISVRDGV 143 R + R++D VY YPIPK+ALLP++ML GLG+ +K++MI+LI++FQ+I+++RD + Sbjct: 82 FRYKNFGRVMDSFVYFCYPIPKLALLPIIMLLAGLGDVTKIIMIVLIIIFQIIVNLRDSL 141 Query: 144 KAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILSTIRISLGTAISVLFFTEIYGTEHG 203 + I + ++ VLTS+GA+ Q ++ LP LST+R+++GTAISVLF TE YGT G Sbjct: 142 RNISKESFLVLTSLGATHAQLMRHLILPAITPEALSTLRVAIGTAISVLFVTETYGTNKG 201 Query: 204 MGFFIMDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDVMDYKFMKWRR 250 MGFFI+DAW+R+ Y EMY GI+ D ++ +WR Sbjct: 202 MGFFIVDAWMRISYTEMYVGIVVLGMAGFFLFLLVDGLETALCRWRN 248 >A8U6Z2.1 A8U6Z2_9LACT Putative uncharacterized protein Length = 249 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 3/250 (1%) Query: 1 MVKKRRFPHLLRLLFVFLGMNLVWYIAYLLMHHPILPSPGAVYEAMFQLGAKDVALNVGY 60 M +K + P L +G+ L+W Y ++HP++P P L + ++ Sbjct: 1 MNQKTKMP--FDTLIGLVGLFLIWEGLYFFINHPVIPEPIETIRLFIHLFPSLIP-HILS 57 Query: 61 SLLRIFEGVXXXXXXXXXXXXXMGRSPLWNRLLDPVVYLTYPIPKIALLPVVMLFFGLGE 120 SL RI + +G S +RLL P+VYL YPIPK+A LPV ML +GLG+ Sbjct: 58 SLYRILMAILISFLIGVPLGIWIGASKWADRLLSPLVYLIYPIPKVAFLPVFMLLYGLGD 117 Query: 121 TSKVLMIMLILLFQVIISVRDGVKAIPESTYDVLTSIGASTGQKFWNVTLPGALSVILST 180 SK+ +++ I++FQ+I+SVRDG+ I S Y V+ + AS Q F + P + I+S Sbjct: 118 ASKISLVVWIIVFQLILSVRDGISQIDRSYYQVMRMMHASKWQTFIYLLCPAIIPQIISG 177 Query: 181 IRISLGTAISVLFFTEIYGTEHGMGFFIMDAWLRLDYPEMYAGIMXXXXXXXXXXXXXDV 240 +R+ +G AI+ LFF E Y T++G+G++IM+AW +DY EM+ GI+ D+ Sbjct: 178 LRVCIGIAIASLFFAENYATKYGLGYYIMNAWSVIDYSEMFCGILALCLLGFLLFKLIDI 237 Query: 241 MDYKFMKWRR 250 ++ + W++ Sbjct: 238 LERLLVPWKK 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.146 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,310,008,992 Number of extensions: 46575147 Number of successful extensions: 164901 Number of sequences better than 1.0e-05: 2930 Number of HSP's gapped: 164876 Number of HSP's successfully gapped: 2933 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)