BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0336.0004.p (355 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAC2.1 B3KAC2_9BACI Putative uncharacterized protein 394 e-108 B1D8Z3.1 B1D8Z3_9BACL YerB 320 2e-85 C0Z4B8.1 C0Z4B8_BREBN Putative uncharacterized protein yerB 244 6e-63 B7GFU7.1 B7GFU7_ANOFW Predicted extracellular solute-binding pro... 189 3e-46 A4IJY1.1 A4IJY1_GEOTN Putative uncharacterized protein 185 5e-45 >B3KAC2.1 B3KAC2_9BACI Putative uncharacterized protein Length = 360 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 195/309 (63%), Positives = 233/309 (75%), Gaps = 14/309 (4%) Query: 54 LTGLPLEGSSLPRPLAVMINNAPAARPQSGISEADILYEVLAEGGITRLIGIFQSHTGVV 113 LTGLPLE S RPLAVMINNAPAARPQSG+S+AD++YEVLAEGGITRLIGIFQS + + Sbjct: 51 LTGLPLEASLTQRPLAVMINNAPAARPQSGLSQADMVYEVLAEGGITRLIGIFQSQSDIE 110 Query: 114 KIGPIRSIRPYLIDIGESYGGVTVHAGGSPAAYAILQKEKKEDMDEIGRAGAYFWRDKER 173 KIGPIRSIRPYLI++GESYGGV VHAGGSP AY+I+Q++ K+DMDEIG AGAYFWR K+R Sbjct: 111 KIGPIRSIRPYLINLGESYGGVLVHAGGSPEAYSIIQRQGKQDMDEIGNAGAYFWRAKDR 170 Query: 174 KAPHNLYSNAAKLREGADKLGYAGTAEVPGYLFT----------DKDDVPAE---GEPAA 220 KAPHNLYS+ KLREGA KL Y +VP Y F ++ P E GE A Sbjct: 171 KAPHNLYSSDEKLREGAAKLNYGNDVKVPEYTFYPEAIAASADGEEGTEPVEVISGEAAE 230 Query: 221 EFNINFLLKSYTVSYKYSSERGTYLRGVNGKPHLDLNNGNPVEAANVIVMGADHKVLDDV 280 + I FLL SY V Y+Y TY R +NG PH+DLN+ +EAANVIV+GADHKVLDDV Sbjct: 231 KVEIKFLLDSYVVDYQYDGSSNTYKRSINGSPHVDLNDNVQLEAANVIVLGADHKVLDDV 290 Query: 281 GRLQIDIELGGEAVLFQRGQAVKGRWSRKPEDVIRFVKRDGKEAAMYPGVTHILIVPNSP 340 GRL +++E GGEA+LFQRG+ +KG+W R D IRFVK DGKE + PG T+ IVPN+P Sbjct: 291 GRLAVNVEAGGEAMLFQRGEVIKGQWVRAAGDAIRFVK-DGKEVPLVPGTTYFNIVPNTP 349 Query: 341 TFSSHMKVS 349 +F SH+ +S Sbjct: 350 SFESHVTIS 358 >B1D8Z3.1 B1D8Z3_9BACL YerB Length = 356 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 161/298 (54%), Positives = 204/298 (68%), Gaps = 3/298 (1%) Query: 50 ITSGLTGLPLEGSSLPRPLAVMINNAPAARPQSGISEADILYEVLAEGGITRLIGIFQS- 108 T+ LTGL + + RP+AVMINN ARPQSG++ AD+++EVLAEGGITRL+ IFQS Sbjct: 58 FTAPLTGLKRDSEAEARPVAVMINNLKPARPQSGLTNADVVWEVLAEGGITRLVAIFQST 117 Query: 109 HTGVVKIGPIRSIRPYLIDIGESYGGVTVHAGGSPAAYAILQKEKKEDMDEIGRAGAYFW 168 G +GPIRSIRPYLIDIGESYG + H+G S AY ILQ + K +DEI AG YFW Sbjct: 118 DKGTDAVGPIRSIRPYLIDIGESYGAILAHSGASNDAYDILQHQDKPYLDEISNAGPYFW 177 Query: 169 RDKERKAPHNLYSNAAKLREGADKLGYAGTAEVPGYLFTDKDDVPAEGEPAAEFNINFLL 228 R K+RKAPHNLYS KLR GA+K GY VP Y F + + A G A+ I FLL Sbjct: 178 RSKDRKAPHNLYSELDKLRAGAEKKGYRSDVSVPAYTFAE-EGATASGAAASSIQIKFLL 236 Query: 229 KSYTVSYKYSSERGTYLRGVNGKPHLDLNNGNPVEAANVIVMGADHKVLDDVGRLQIDIE 288 K Y VSY+Y + G Y R +N +PH DLNNG + AANV+V+GA+HK LDDVGRL +D+ Sbjct: 237 KDYKVSYEYDAASGLYKRLINDEPHTDLNNGEQLTAANVVVLGANHKTLDDVGRLSVDLH 296 Query: 289 LGGEAVLFQRGQAVKGRWSRKPEDVIRFVKRDGKEAAMYPGVTHILIVPNSPTFSSHM 346 GG A+LFQ+G+ V+ W R ++++R +K DG E PG T +VPN+PTF+ H+ Sbjct: 297 AGGSALLFQKGKVVECEWVRASDNMVRLMK-DGAELPFVPGKTFFQVVPNTPTFAEHV 353 >C0Z4B8.1 C0Z4B8_BREBN Putative uncharacterized protein yerB Length = 351 Score = 244 bits (624), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 132/286 (46%), Positives = 178/286 (62%), Gaps = 10/286 (3%) Query: 66 RPLAVMINNAPAARPQSGISEADILYEVLAEGGITRLIGIFQSHTGVVKIGPIRSIRPYL 125 RP+ VMINNAP ARPQ+GI++AD++YEVL+EG +TR + IFQS V IGP+RSIRPY Sbjct: 70 RPIMVMINNAPPARPQTGINKADMIYEVLSEGEMTRFLAIFQSQKPEV-IGPVRSIRPYF 128 Query: 126 IDIGESYGGVTVHAGGSPAAYAILQKEKKEDMDEIGRAGAYFWRDKERKAPHNLYSNAAK 185 I IG + V VHAGGSP A L ++ +DEI G YFWR+K RK PHNLY+ Sbjct: 129 IQIGTGFDAVLVHAGGSPDALETLARKDLSHLDEIPN-GKYFWREKFRKMPHNLYTKPEL 187 Query: 186 LREGADKLGYAGTAEVPGYLFTDKDDVPAEGEPAAEFNINF--LLKSYTVSYKYSSERGT 243 L + G TAEVP + F +D EGEPA + ++ F L K+ ++ Y +E+ Sbjct: 188 LEKAMQDKGMRQTAEVPRFTFLPEDTEIKEGEPATQVDLTFHSLNKA---AFTYDAEQKK 244 Query: 244 YLRGVNGKPHLDLNNGNPVEAANVIVMGADHKVLDDVGRLQIDIELGGEAVLFQRGQAVK 303 Y+R GKPHLDL++ + N++V+ A H+VLD GRL +D+ G+ LFQ+G+A K Sbjct: 245 YMRFTAGKPHLDLSDKKQLSTTNLLVISAKHRVLDKEGRLSVDVIGPGDGYLFQQGKARK 304 Query: 304 GRWSRKPEDVIRFVKRDG--KEAAMYPGVTHILIVPNSPTFSSHMK 347 +W R VIR + +EA + PG T I I+PNSP S +K Sbjct: 305 IKWKRS-NGVIRAYEDAALTQEAPLLPGNTWISILPNSPGLSKSLK 349 >B7GFU7.1 B7GFU7_ANOFW Predicted extracellular solute-binding protein, TRAP-type Length = 340 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 158/289 (54%), Gaps = 8/289 (2%) Query: 51 TSGLTGLPLEGSSLPRPLAVMINNAPAARPQSGISEADILYEVLAEGGITRLIGIFQSHT 110 T LTG+P + ++ R +AVMINN PAARPQSG+ +ADI+YEVLAEG ITR + I+QS Sbjct: 52 TFPLTGMPAKEKAMQRAVAVMINNYPAARPQSGLHKADIVYEVLAEGDITRFLAIYQSEQ 111 Query: 111 GVVKIGPIRSIRPYLIDIGESYGGVTVHAGGSPAAYAILQKEKKEDMDEIGRAGAYFWRD 170 + IGP+RS R Y I + + + V G SP A +L+ + ++ + G FWRD Sbjct: 112 PDM-IGPVRSARDYFIQLSNGFHALYVCHGWSPEAQKLLKSGAADYVNGLFYDGTLFWRD 170 Query: 171 KERKAPHNLYSNAAKLREGADKLGYAGTAEVPGYLFTDKDDVPAEGEPAAEFNINFLLKS 230 + RKAPHN Y + +++GA+K GYA EV F D A A ++ + +S Sbjct: 171 RTRKAPHNSYISFENIKKGAEKNGYAFEEEVKPLPFFTNDLTNA--VKATNIDVVYSKRS 228 Query: 231 YT-VSYKYSSERGTYLRGVNGKPHLDLNNGNPVEAANVIVMGADHKVLDDVGRLQIDIEL 289 Y V Y Y + Y+R GKP +D P+ NV V+ A H+++DD GR ID Sbjct: 229 YAHVHYAYDGTK--YVRSSGGKPTVDRETNTPIAVENVFVIEATHQIIDDYGRRDIDFTS 286 Query: 290 GGEAVLFQRGQAVKGRWSRKPEDVIRFVKRDGKEAAMYPGVTHILIVPN 338 GG+ LFQ G + W ++ + +DG G T I +VPN Sbjct: 287 GGKGYLFQEGTMQEVEWKNIDGRLLPY--KDGVPLGFTRGKTWIQVVPN 333 >A4IJY1.1 A4IJY1_GEOTN Putative uncharacterized protein Length = 339 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 111/285 (38%), Positives = 157/285 (55%), Gaps = 7/285 (2%) Query: 54 LTGLPLEGSSLPRPLAVMINNAPAARPQSGISEADILYEVLAEGGITRLIGIFQSHTGVV 113 LTGLP EG R ++VMINN P ARPQSG+ +ADI+YEVLAEG ITR + ++QS Sbjct: 53 LTGLPTEGDIDQRVVSVMINNHPKARPQSGLHQADIVYEVLAEGDITRFLALYQSELP-E 111 Query: 114 KIGPIRSIRPYLIDIGESYGGVTVHAGGSPAAYAILQKEKKEDMDEIGRAGAYFWRDKER 173 ++GP+RS R Y ID+ + Y + V G SP A L++ + ++ + G F R R Sbjct: 112 RVGPVRSAREYYIDLSDGYHALYVCHGWSPEAKTRLEQGNTDYLNGLFYDGTLFQRVSFR 171 Query: 174 KAPHNLYSNAAKLREGADKLGYAGTAEVPGYLFTDKDDVPAEGEPAAEFNINFLLKSYT- 232 KAPHN Y A + +GA++ GY T ++ LF +DD P+ GE I + ++Y Sbjct: 172 KAPHNSYITFANIEKGAEQNGYVWTDDIDPLLF--RDDEPS-GEQVETVRITYSHRAYAQ 228 Query: 233 VSYKYSSERGTYLRGVNGKPHLDLNNGNPVEAANVIVMGADHKVLDDVGRLQIDIELGGE 292 V Y+Y+ E+ Y R G+ +D + PV NV+++ A H+V+D GR ID GG+ Sbjct: 229 VEYRYAPEQKGYYRYSGGEQTVDYDTHEPVVVQNVMIIAARHQVIDSYGRRDIDFTSGGQ 288 Query: 293 AVLFQRGQAVKGRWSRKPEDVIRFVKRDGKEAAMYPGVTHILIVP 337 L Q G W ++ + RDG PG T I IVP Sbjct: 289 GYLLQNGVMQPIEWKNVDGRLLPY--RDGVPVGFVPGKTWINIVP 331 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,042,435,756 Number of extensions: 91341344 Number of successful extensions: 198191 Number of sequences better than 1.0e-05: 96 Number of HSP's gapped: 197967 Number of HSP's successfully gapped: 96 Length of query: 355 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 218 Effective length of database: 1,770,017,148 Effective search space: 385863738264 Effective search space used: 385863738264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)