BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0336.0003.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAC3.1 B3KAC3_9BACI Putative uncharacterized protein 350 5e-95 B1D8Z4.1 B1D8Z4_9BACL Putative uncharacterized protein 258 2e-67 A4ISD9.1 A4ISD9_GEOTN Putative Pit accessory protein 194 5e-48 B4BSE5.1 B4BSE5_9BACI Putative uncharacterized protein 194 5e-48 C1T9F2.1 C1T9F2_9FIRM Phosphate transport regulator related to PhoU 193 1e-47 >B3KAC3.1 B3KAC3_9BACI Putative uncharacterized protein Length = 204 Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 169/205 (82%), Positives = 189/205 (92%), Gaps = 1/205 (0%) Query: 25 MKLRKKDIFFETLENMADTIVQAADYFAQNITTLRENVENFAGVMKKYESQCDTYTHTVI 84 MK++KKDIFF+TLENMADT+VQAADYF+Q+++ L E+V FA MKKYESQCDTYTHT+I Sbjct: 1 MKMKKKDIFFQTLENMADTVVQAADYFSQHVSNL-EDVLEFANEMKKYESQCDTYTHTII 59 Query: 85 KELNKTFITPLERDDIMDLITSMDDVIDGLEASASRFYMYNLLEPDEYIVQFAEILRQSA 144 ELNKTFITP+ERDDIMDL TSMDDV+DGLEA+ASRFYMY L +PDEY+VQFAEILRQSA Sbjct: 60 TELNKTFITPIERDDIMDLTTSMDDVMDGLEATASRFYMYQLGKPDEYMVQFAEILRQSA 119 Query: 145 YEIQKAVHLLSQKKLLAIREYTIRLNDLENQGDEVLRICTKALFESVKDPIELIKRKELY 204 YEIQKA+HLLSQKKLLAIREYTIRLNDLENQGDE+LRIC K LF +V DPI LIK+KE+Y Sbjct: 120 YEIQKAIHLLSQKKLLAIREYTIRLNDLENQGDELLRICIKDLFATVSDPILLIKKKEIY 179 Query: 205 ERLETTTDKCEDVANMLESIIMRNS 229 ERLETTTD CEDVANMLESIIMRNS Sbjct: 180 ERLETTTDTCEDVANMLESIIMRNS 204 >B1D8Z4.1 B1D8Z4_9BACL Putative uncharacterized protein Length = 203 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 128/203 (63%), Positives = 162/203 (79%), Gaps = 1/203 (0%) Query: 27 LRKKDIFFETLENMADTIVQAADYFAQNITTLRENVENFAGVMKKYESQCDTYTHTVIKE 86 +KKDIFF+T E MADT+V A +YFA ++ L +V FA MK++ES+ D Y HT++KE Sbjct: 2 FKKKDIFFKTFEEMADTLVDAIEYFANGVSDLS-DVTQFAKTMKEHESRGDQYVHTILKE 60 Query: 87 LNKTFITPLERDDIMDLITSMDDVIDGLEASASRFYMYNLLEPDEYIVQFAEILRQSAYE 146 LNKTFITP+ER+DIM L +S+DDV+DG+EA ASRF MYN+ E DEYI F +IL +SA + Sbjct: 61 LNKTFITPIEREDIMALTSSLDDVLDGIEACASRFEMYNIQEKDEYITLFGDILLRSANQ 120 Query: 147 IQKAVHLLSQKKLLAIREYTIRLNDLENQGDEVLRICTKALFESVKDPIELIKRKELYER 206 I+KA++LL+ KKLLAIRE I LN+LENQ D++LR+ K+LF +V DPIEL+KRKE+YE Sbjct: 121 IKKAIYLLTDKKLLAIREPNIALNELENQADDLLRVSIKSLFTNVTDPIELMKRKEIYEM 180 Query: 207 LETTTDKCEDVANMLESIIMRNS 229 LE TTD CEDVAN LESIIMRNS Sbjct: 181 LEQTTDYCEDVANTLESIIMRNS 203 >A4ISD9.1 A4ISD9_GEOTN Putative Pit accessory protein Length = 206 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/205 (48%), Positives = 142/205 (69%), Gaps = 8/205 (3%) Query: 29 KKDIFFETLENMADTIVQAADYFA----QNITTLRENVENFAGVMKKYESQCDTYTHTVI 84 KKD+FF+ L +++ + +AA YF Q+++ L+E FA VMK+YE + D+Y H ++ Sbjct: 6 KKDVFFDMLFTISENVKEAAQYFVEYKIQSVSDLKE----FARVMKEYERKGDSYIHELV 61 Query: 85 KELNKTFITPLERDDIMDLITSMDDVIDGLEASASRFYMYNLLEPDEYIVQFAEILRQSA 144 LNKTFITP+ER+DI L MDDV+DG E ++RF M++ + DE++V+F + + QS Sbjct: 62 VHLNKTFITPIEREDIHQLAMKMDDVLDGFEQCSARFEMFSFTDIDEHMVKFFDYIYQST 121 Query: 145 YEIQKAVHLLSQKKLLAIREYTIRLNDLENQGDEVLRICTKALFESVKDPIELIKRKELY 204 EI A+ LLS KKLL +R++ I++ D E + DE+LR K LF + KDPI+LI+ KELY Sbjct: 122 IEIVHALELLSHKKLLDMRQHAIKIKDYETKCDEILRASIKNLFVTQKDPIKLIQYKELY 181 Query: 205 ERLETTTDKCEDVANMLESIIMRNS 229 E LE D CEDVAN LE+IIMRN+ Sbjct: 182 EMLEEIADSCEDVANTLETIIMRNA 206 >B4BSE5.1 B4BSE5_9BACI Putative uncharacterized protein Length = 206 Score = 194 bits (493), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/205 (48%), Positives = 142/205 (69%), Gaps = 8/205 (3%) Query: 29 KKDIFFETLENMADTIVQAADYFA----QNITTLRENVENFAGVMKKYESQCDTYTHTVI 84 KKD+FF+ L +++ + +AA YF Q+++ L+E FA VMK+YE + D+Y H ++ Sbjct: 6 KKDVFFDMLFTISENVKEAAQYFVEYKIQSVSDLKE----FARVMKEYERKGDSYIHELV 61 Query: 85 KELNKTFITPLERDDIMDLITSMDDVIDGLEASASRFYMYNLLEPDEYIVQFAEILRQSA 144 LNKTFITP+ER+DI L MDDV+DG E ++RF M++ + DE++V+F + + QS Sbjct: 62 VHLNKTFITPIEREDIHQLAMKMDDVLDGFEQCSARFEMFSFTDIDEHMVKFFDYIYQST 121 Query: 145 YEIQKAVHLLSQKKLLAIREYTIRLNDLENQGDEVLRICTKALFESVKDPIELIKRKELY 204 EI A+ LLS KKLL +R++ I++ D E + DE+LR K LF + KDPI+LI+ KELY Sbjct: 122 IEIVHALELLSHKKLLDMRQHAIKIKDYETKCDEILRASIKNLFVTQKDPIKLIQYKELY 181 Query: 205 ERLETTTDKCEDVANMLESIIMRNS 229 E LE D CEDVAN LE+IIMRN+ Sbjct: 182 EMLEEIADSCEDVANTLETIIMRNA 206 >C1T9F2.1 C1T9F2_9FIRM Phosphate transport regulator related to PhoU Length = 204 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/205 (48%), Positives = 144/205 (70%), Gaps = 1/205 (0%) Query: 25 MKLRKKDIFFETLENMADTIVQAADYFAQNITTLRENVENFAGVMKKYESQCDTYTHTVI 84 M +KKDIFFET+ D + +AA F + I L ++ E++A +K E + D YTHT++ Sbjct: 1 MFFKKKDIFFETIILDVDNLKEAAYLFQEEIHNLHDS-EHYAEKIKTLEDKGDGYTHTIM 59 Query: 85 KELNKTFITPLERDDIMDLITSMDDVIDGLEASASRFYMYNLLEPDEYIVQFAEILRQSA 144 LN+TFITPLER+DI L + +DDV+DG+EA A R +YN+ E D+Y+ FA+++ S Sbjct: 60 HALNRTFITPLEREDIFGLASKLDDVLDGIEACADRMELYNVKESDDYMKLFAQMIVNSV 119 Query: 145 YEIQKAVHLLSQKKLLAIREYTIRLNDLENQGDEVLRICTKALFESVKDPIELIKRKELY 204 EI A+ LL QKK++ + + R+N+LEN+ D++LR K LFE + +PI +IK+K+LY Sbjct: 120 DEISFAIKLLVQKKMMEMSRHINRINELENEADQLLREAIKTLFEEIDNPILIIKKKDLY 179 Query: 205 ERLETTTDKCEDVANMLESIIMRNS 229 E LE+ TD CEDVA++LES+IMRNS Sbjct: 180 EVLESVTDACEDVADLLESLIMRNS 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,156,479,446 Number of extensions: 42464662 Number of successful extensions: 142913 Number of sequences better than 1.0e-05: 432 Number of HSP's gapped: 142245 Number of HSP's successfully gapped: 432 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)