BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0336.0001.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z7F0.1 C0Z7F0_BREBN Glutamine ABC transporter ATP binding protein 374 e-102 C5DAH4.1 C5DAH4_9BACI ABC transporter related 362 2e-98 B1DI88.1 B1DI88_9BACL ABC transporter related 361 4e-98 C3J4C7.1 C3J4C7_9BACI ABC transporter related 360 5e-98 B7YEI4.1 B7YEI4_9BACI ABC transporter related protein 360 5e-98 >C0Z7F0.1 C0Z7F0_BREBN Glutamine ABC transporter ATP binding protein Length = 242 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 173/242 (71%), Positives = 205/242 (84%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I FHQV KHYG FHVLKNI+LH KSTM+RCINRLET+T G L V Sbjct: 1 MISFHQVNKHYGSFHVLKNINLHINQGEVVVVIGPSGSGKSTMVRCINRLETVTDGELVV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 DG+ VN + TDINKLR++IGMVFQHFNLYPHK V+ NITLAP KVLG+++ EAE+TA+YY Sbjct: 61 DGVKVNGKNTDINKLRRDIGMVFQHFNLYPHKTVLQNITLAPTKVLGVSQKEAEETALYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI +KA+ +P+QLSGGQQQRVAIARGLAM+PKIMLFDEPTSALDPE +GEVLDVM+ Sbjct: 121 LEKVGIPEKAEMFPTQLSGGQQQRVAIARGLAMRPKIMLFDEPTSALDPETIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMDQG I+E++ PE+FFA+P+EER R FLSR+L Sbjct: 181 KLAKEGMTMVVVTHEMGFAREVADRIVFMDQGTILEDSTPEEFFASPREERARLFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 >C5DAH4.1 C5DAH4_9BACI ABC transporter related Length = 242 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 170/242 (70%), Positives = 202/242 (83%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I FHQV K+YG FHVLK+I+L KST++RCINRLETI+SG L V Sbjct: 1 MIYFHQVNKYYGDFHVLKDINLTIHQGEVVVIIGPSGSGKSTLVRCINRLETISSGELIV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 D + VN++ DIN+LR+ IGMVFQHFNLYPH V+ NITLAP+KVL + + EA++TAMYY Sbjct: 61 DNVKVNDKNIDINQLRRNIGMVFQHFNLYPHMTVLQNITLAPMKVLRIPEKEAKETAMYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA +YPS+LSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPE +GEVLDVM+ Sbjct: 121 LEKVGIPDKANAYPSELSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPETIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMDQG+I+EEA PE+FFANP+EER + FLSR+L Sbjct: 181 QLAKEGMTMVVVTHEMGFAREVADRIVFMDQGRILEEAPPEEFFANPKEERAKVFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 >B1DI88.1 B1DI88_9BACL ABC transporter related Length = 242 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 176/242 (72%), Positives = 198/242 (81%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I+F QVEKHYG FHVLK IDL KST+LRC+NRLE ITSG LTV Sbjct: 1 MIEFQQVEKHYGDFHVLKGIDLRVAQGEVVVVVGPSGSGKSTLLRCVNRLEAITSGRLTV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 + + V ++KTDINKLR+EIGMVFQHFNLYPH KVIDNITLAP+K LG+ K A +TA Y Sbjct: 61 NDVDVADKKTDINKLRREIGMVFQHFNLYPHMKVIDNITLAPMKSLGVPKPHAVETAKMY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA ++PSQLSGGQQQRVAIAR LAMKPKIMLFDEPTSALDPEMVGEVLDVM+ Sbjct: 121 LEKVGIEDKAGAFPSQLSGGQQQRVAIARALAMKPKIMLFDEPTSALDPEMVGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADRV+FMD+GQIVE + PE+FF P+EER R FL+RVL Sbjct: 181 TLAQEGMTMVVVTHEMGFAREVADRVVFMDKGQIVEISPPEEFFEQPREERARLFLNRVL 240 Query: 249 SH 250 H Sbjct: 241 RH 242 >C3J4C7.1 C3J4C7_9BACI ABC transporter related Length = 242 Score = 360 bits (925), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 171/242 (70%), Positives = 200/242 (82%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I FHQV K+YG FHVLK+I+L KST++RCINRLETI+SG L V Sbjct: 1 MIYFHQVNKYYGDFHVLKDINLTINQGEVVVIIGPSGSGKSTLVRCINRLETISSGELIV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 DGI VN++ +IN+LR+ IGMVFQHFNLYPH V+ NITLAP KVLG+++ EA + AMYY Sbjct: 61 DGIKVNDKHININELRRNIGMVFQHFNLYPHMTVLQNITLAPRKVLGMSEKEANEIAMYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA +YPS LSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPE +GEVLDVM+ Sbjct: 121 LEKVGIPDKANAYPSALSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPETIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMDQG+I+EEA PE+FFA P+EER R FLSR+L Sbjct: 181 QLAKEGMTMVVVTHEMGFAREVADRIVFMDQGRILEEAPPEEFFAAPKEERARVFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 >B7YEI4.1 B7YEI4_9BACI ABC transporter related protein Length = 242 Score = 360 bits (925), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 171/242 (70%), Positives = 200/242 (82%) Query: 9 LIDFHQVEKHYGQFHVLKNIDLHXXXXXXXXXXXXXXXXKSTMLRCINRLETITSGGLTV 68 +I FHQV K+YG FHVLK+I+L KST++RCINRLETI+SG L V Sbjct: 1 MIYFHQVNKYYGDFHVLKDINLTINQGEVVVIIGPSGSGKSTLVRCINRLETISSGELIV 60 Query: 69 DGITVNERKTDINKLRKEIGMVFQHFNLYPHKKVIDNITLAPVKVLGLTKAEAEKTAMYY 128 DGI VN++ +IN+LR+ IGMVFQHFNLYPH V+ NITLAP KVLG+++ EA + AMYY Sbjct: 61 DGIKVNDKHININELRRNIGMVFQHFNLYPHMTVLQNITLAPRKVLGMSEKEANEIAMYY 120 Query: 129 LEKVGIADKAQSYPSQLSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPEMVGEVLDVMR 188 LEKVGI DKA +YPS LSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPE +GEVLDVM+ Sbjct: 121 LEKVGIPDKANAYPSALSGGQQQRVAIARGLAMKPKIMLFDEPTSALDPETIGEVLDVMK 180 Query: 189 NLAREGMTMVVVTHEMGFAREVADRVIFMDQGQIVEEAEPEQFFANPQEERTRTFLSRVL 248 LA+EGMTMVVVTHEMGFAREVADR++FMDQG+I+EEA PE+FFA P+EER R FLSR+L Sbjct: 181 QLAKEGMTMVVVTHEMGFAREVADRIVFMDQGRILEEAPPEEFFAAPKEERARVFLSRIL 240 Query: 249 SH 250 +H Sbjct: 241 NH 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,269,947,528 Number of extensions: 43955290 Number of successful extensions: 368779 Number of sequences better than 1.0e-05: 89589 Number of HSP's gapped: 264765 Number of HSP's successfully gapped: 96618 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)