BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0019.p (445 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q87M64.1 Q87M64_VIBPA Sodium:galactoside symporter family protein 189 4e-46 A6AZJ0.1 A6AZJ0_VIBPA Sodium:galactoside symporter family protein 189 4e-46 A7K364.1 A7K364_9VIBR Sugar (Glycoside-Pentoside-Hexuronide) tra... 189 7e-46 A6D1Y7.1 A6D1Y7_9VIBR Sodium:galactoside symporter family protein 188 8e-46 A5FA18.1 A5FA18_FLAJ1 Sugar (Glycoside-Pentoside-Hexuronide) tra... 181 2e-43 >Q87M64.1 Q87M64_VIBPA Sodium:galactoside symporter family protein Length = 462 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/434 (29%), Positives = 200/434 (46%), Gaps = 5/434 (1%) Query: 1 LTTKVSLAEKMVFSGGLLGQNMLYSFMSMYILFFYTDLLGISTSTASAILVTASIVDACL 60 L K++ E M + G +GQ + + +IL+FYTD+LGIS AS I + A + DA Sbjct: 4 LQNKLTNKELMSYFGYGVGQCFSFGLVGSFILYFYTDILGISPIAASTIFLIARVWDAVN 63 Query: 61 DPVMGMITDKTRSRWGKFRPYLLFAPVLIAAATVLCFMDFDTSSALTVTIAAFSYLLWGM 120 DP++ D SR+GKFRPY+LF PVLI TV F + D ++ V A +Y+LWG Sbjct: 64 DPLIAGYMDTLDSRFGKFRPYMLFTPVLIVLVTVAAFYNIDADTSTKVMYAGITYILWGT 123 Query: 121 LYTVCDTPLWALSSVISKDPAERTLVVTLGKXXXXXXXXXXXXXXXQLLLAFGGERSTKX 180 LYT+ D P W++SSV++ +P ER T +L F R+ + Sbjct: 124 LYTISDVPFWSMSSVMTDEPQERAKAATCAMLGVNAGIGATLVVFPKLSAYFADGRADQG 183 Query: 181 XXXXXXXXXXXXXXXXFLTGMLSRERV-VPSTERISFRNNLQTVYKNKPXXXXXXXXXXX 239 ++ER+ S E+++ + Q V KNKP Sbjct: 184 YLPAVIVLMIAGLFFMLNGFYNTKERISTKSCEKVTLKQTFQAVRKNKPLFFILAAFFMN 243 Query: 240 XXVTGIRQSIQLYYVVYVWGDASYGTQVG-ISLVAGMLLGMIATPRLLGYFSKKSVFIGS 298 + + +++ Y GDA + +G I+LV+ + +ATP L F K+ +FI Sbjct: 244 VFFN-LVNGLYIFFFTYNMGDAGLVSLIGTITLVSA--IACLATPVLTKRFKKRDIFIAL 300 Query: 299 CILGSLSCLVPYLFGDQNXXXXXXXXXXXXXXXXXXXIVSTSMLLDTIDYSEWKLGFRGE 358 C+L ++ + Y G N + ++M+ DT++YS + G R Sbjct: 301 CVLEIIARIGFYFTGYDNPTVVMAWLAVITGIFMMTNPLISAMIADTVEYSYYHSGKRTA 360 Query: 359 GIVFSTNTFITKFSGAVSRLIIGASLGVLNYVENQPVTPGLRHGLSLVMFLLPALCFLAA 418 I FS TF K S AV+ + G L ++ YV N T +G+ + LLPAL L Sbjct: 361 AITFSGQTFTGKLSVAVAGGLTGLILTMIGYVPNAAQTETALNGMFFCIALLPALGALVR 420 Query: 419 IIPILFYTISDKQR 432 I + YT ++ Q Sbjct: 421 IFIMSRYTFTEDQH 434 >A6AZJ0.1 A6AZJ0_VIBPA Sodium:galactoside symporter family protein Length = 462 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/434 (29%), Positives = 200/434 (46%), Gaps = 5/434 (1%) Query: 1 LTTKVSLAEKMVFSGGLLGQNMLYSFMSMYILFFYTDLLGISTSTASAILVTASIVDACL 60 L K++ E M + G +GQ + + +IL+FYTD+LGIS AS I + A + DA Sbjct: 4 LQNKLTNKELMSYFGYGVGQCFSFGLVGSFILYFYTDILGISPIAASTIFLIARVWDAVN 63 Query: 61 DPVMGMITDKTRSRWGKFRPYLLFAPVLIAAATVLCFMDFDTSSALTVTIAAFSYLLWGM 120 DP++ D SR+GKFRPY+LF PVLI TV F + D ++ V A +Y+LWG Sbjct: 64 DPLIAGYMDTLDSRFGKFRPYMLFTPVLIVLVTVAAFYNIDADTSTKVMYAGITYILWGT 123 Query: 121 LYTVCDTPLWALSSVISKDPAERTLVVTLGKXXXXXXXXXXXXXXXQLLLAFGGERSTKX 180 LYT+ D P W++SSV++ +P ER T +L F R+ + Sbjct: 124 LYTISDVPFWSMSSVMTDEPQERAKAATCAMLGVNAGIGATLVVFPKLSAYFADGRADQG 183 Query: 181 XXXXXXXXXXXXXXXXFLTGMLSRERV-VPSTERISFRNNLQTVYKNKPXXXXXXXXXXX 239 ++ER+ S E+++ + Q V KNKP Sbjct: 184 YLPAVIVLMIAGLFFMLNGFYNTKERISTKSCEKVTLKQTFQAVRKNKPLFFILAAFFMN 243 Query: 240 XXVTGIRQSIQLYYVVYVWGDASYGTQVG-ISLVAGMLLGMIATPRLLGYFSKKSVFIGS 298 + + +++ Y GDA + +G I+LV+ + +ATP L F K+ +FI Sbjct: 244 VFFN-LVNGLYIFFFTYNMGDAGLVSLIGTITLVSA--IACLATPVLTKRFKKRDIFIAL 300 Query: 299 CILGSLSCLVPYLFGDQNXXXXXXXXXXXXXXXXXXXIVSTSMLLDTIDYSEWKLGFRGE 358 C+L ++ + Y G N + ++M+ DT++YS + G R Sbjct: 301 CVLEIIARIGFYFTGYDNPTVVMAWLAVITGIFMMTNPLISAMIADTVEYSYYHSGKRTA 360 Query: 359 GIVFSTNTFITKFSGAVSRLIIGASLGVLNYVENQPVTPGLRHGLSLVMFLLPALCFLAA 418 I FS TF K S AV+ + G L ++ YV N T +G+ + LLPAL L Sbjct: 361 AITFSGQTFTGKLSVAVAGGLTGLILTMIGYVPNAAQTETALNGMFFCIALLPALGALVR 420 Query: 419 IIPILFYTISDKQR 432 I + YT ++ Q Sbjct: 421 IFIMSRYTFTEDQH 434 >A7K364.1 A7K364_9VIBR Sugar (Glycoside-Pentoside-Hexuronide) transporter subfamily Length = 462 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 129/434 (29%), Positives = 199/434 (45%), Gaps = 5/434 (1%) Query: 1 LTTKVSLAEKMVFSGGLLGQNMLYSFMSMYILFFYTDLLGISTSTASAILVTASIVDACL 60 L K++ E M + G +GQ + + +IL+FYTD+LGIS AS I + A + DA Sbjct: 4 LQNKLTNKELMSYFGYGVGQCFSFGLVGSFILYFYTDILGISPIAASTIFLIARVWDAVN 63 Query: 61 DPVMGMITDKTRSRWGKFRPYLLFAPVLIAAATVLCFMDFDTSSALTVTIAAFSYLLWGM 120 DP++ D SR+GKFRPY+LF P+LI TV F + D ++ V A +Y+LWG Sbjct: 64 DPLIAGYMDTLDSRFGKFRPYMLFTPILIVLVTVAAFYNIDADTSTKVMYAGITYILWGT 123 Query: 121 LYTVCDTPLWALSSVISKDPAERTLVVTLGKXXXXXXXXXXXXXXXQLLLAFGGERSTKX 180 LYT+ D P W++SSV++ +P ER T +L F R+ + Sbjct: 124 LYTISDVPFWSMSSVMTDEPQERAKAATCAMLGVNAGIGATLVVFPKLSAYFADGRADQG 183 Query: 181 XXXXXXXXXXXXXXXXFLTGMLSRERV-VPSTERISFRNNLQTVYKNKPXXXXXXXXXXX 239 ++ER+ S E+++ + Q V KNKP Sbjct: 184 YLPAVIVLMIAGLFFMLNGFYNTKERISTKSCEKVTLKQTFQAVRKNKPLFFILAAFFMN 243 Query: 240 XXVTGIRQSIQLYYVVYVWGDASYGTQVG-ISLVAGMLLGMIATPRLLGYFSKKSVFIGS 298 + + +++ Y GDA + +G I+LV+ + +ATP L F K+ +FI Sbjct: 244 VFFN-LVNGLYIFFFTYNMGDAGLVSLIGTITLVSA--IACLATPVLTKRFKKRDIFIAL 300 Query: 299 CILGSLSCLVPYLFGDQNXXXXXXXXXXXXXXXXXXXIVSTSMLLDTIDYSEWKLGFRGE 358 C+L ++ + Y G N + ++M+ DT++YS + G R Sbjct: 301 CVLEIIARIGFYFTGYDNPTVVMAWLAVITGIFMMTNPLISAMIADTVEYSYYHSGKRTA 360 Query: 359 GIVFSTNTFITKFSGAVSRLIIGASLGVLNYVENQPVTPGLRHGLSLVMFLLPALCFLAA 418 I FS TF K S AV+ + G L ++ YV N T G+ + LLPAL L Sbjct: 361 AITFSGQTFTGKLSVAVAGGLTGVILTMIGYVPNAAQTETALSGMFFCIALLPALGALVR 420 Query: 419 IIPILFYTISDKQR 432 I + YT ++ Q Sbjct: 421 IFIMSRYTFTEDQH 434 >A6D1Y7.1 A6D1Y7_9VIBR Sodium:galactoside symporter family protein Length = 448 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 125/423 (29%), Positives = 196/423 (46%), Gaps = 4/423 (0%) Query: 11 MVFSGGLLGQNMLYSFMSMYILFFYTDLLGISTSTASAILVTASIVDACLDPVMGMITDK 70 M + G +GQ + + +IL+FYTD+LGIS AS I + A + DA DP++ D Sbjct: 1 MSYFGYGVGQCFSFGLVGSFILYFYTDILGISPIAASTIFLIARVWDAVNDPIIAGYMDT 60 Query: 71 TRSRWGKFRPYLLFAPVLIAAATVLCFMDFDTSSALTVTIAAFSYLLWGMLYTVCDTPLW 130 SR+GKFRPY+LF PVLI T+ F + D ++ V A +Y+LWG LYT+ D P W Sbjct: 61 LESRFGKFRPYMLFTPVLIVLVTIASFYNIDADTSTKVMYAGITYILWGTLYTISDVPFW 120 Query: 131 ALSSVISKDPAERTLVVTLGKXXXXXXXXXXXXXXXQLLLAFGGERSTKXXXXXXXXXXX 190 ++SSV++ +P ER T +L F R+ + Sbjct: 121 SMSSVMTDEPQERAKAATCAMLGVNAGIGATLVLFPKLSAYFADGRADQGYLPAVIVLMV 180 Query: 191 XXXXXXFLTGMLSRERVVPSTERISFRNNLQTVYKNKPXXXXXXXXXXXXXVTGIRQSIQ 250 + ++ER+ ++E+++ + Q V KNKP + + Sbjct: 181 AGLLFMWNGFYNTKERISTASEKVTLKQTFQAVRKNKPLFFILAAFFMNVFFN-LVNGLY 239 Query: 251 LYYVVYVWGDASYGTQVG-ISLVAGMLLGMIATPRLLGYFSKKSVFIGSCILGSLSCLVP 309 +++ Y GDA + +G I+LV+ + +ATP L F K+ +FI C+L ++ + Sbjct: 240 IFFFTYNMGDAGLVSLIGTITLVSA--IACLATPVLTKRFKKRDIFITLCVLEIIARVGF 297 Query: 310 YLFGDQNXXXXXXXXXXXXXXXXXXXIVSTSMLLDTIDYSEWKLGFRGEGIVFSTNTFIT 369 Y+ G N + ++M+ DT++YS + G R I FS TF Sbjct: 298 YMTGYDNPTVVMSWLAVITAIFMMTNPLISAMIADTVEYSYYHSGKRTAAITFSGQTFTG 357 Query: 370 KFSGAVSRLIIGASLGVLNYVENQPVTPGLRHGLSLVMFLLPALCFLAAIIPILFYTISD 429 K S AV+ + G L + YV N T G+ + LLPAL L I + YT ++ Sbjct: 358 KLSVAVAGGLTGLILASIGYVPNAEQTETALDGMFFCIALLPALGALIRIFIMSKYTFTE 417 Query: 430 KQR 432 Q Sbjct: 418 DQH 420 >A5FA18.1 A5FA18_FLAJ1 Sugar (Glycoside-Pentoside-Hexuronide) transporter Length = 463 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/459 (26%), Positives = 207/459 (45%), Gaps = 20/459 (4%) Query: 1 LTTKVSLAEKMVFSGGLLGQNMLYSFMSMYILFFYTDLLGISTSTASAILVTASIVDACL 60 + K+SL EK+ + G +M + SMY+LFFYTD+ G++ + + + I D+C Sbjct: 1 MHDKISLKEKIGYGLGDAASSMFWKIFSMYLLFFYTDIFGLAPAIVGTMFLITRIWDSCF 60 Query: 61 DPVMGMITDKTRSRWGKFRPYLLFAPVLIAAATVLCFM--DFDTSSALTVTIAAFSYLLW 118 DP++G+I D+T+++WGKFRPYLL+ V A VL F DFD + +S ++ Sbjct: 61 DPIVGIIADRTKTKWGKFRPYLLWVAVPFAVIGVLTFYTPDFDEKGKIIYAYVTYSLMM- 119 Query: 119 GMLYTVCDTPLWALSSVISKDPAERTLVVTLGKXXXXXXXXXXXXXXXQLLLAFGGERST 178 M+Y++ + P +L V+S D +R + + L+ FGG ++ Sbjct: 120 -MIYSLINVPYASLLGVMSSDRKDRNTLSSYRMVFAFGGSLLALWLIEPLVNYFGGNLNS 178 Query: 179 KXXXXXXXXXXXXXXXXXFLTG-MLSRERVVP-STERISFRNNLQTVYKNKPXXXXXXXX 236 K F ++ERV P E+ + + +L+ + KNKP Sbjct: 179 KTGWLATISVFGVITTLFFWACFFFTKERVKPIENEQSNLKEDLKDLLKNKPWWILLGAG 238 Query: 237 XXXXXVTGIRQSIQLYYVVY-----------VWGDASYGTQVGISLVAGM---LLGMIAT 282 IR +YY Y ++G + T I LV G ++G+I Sbjct: 239 IGTLVFNSIRDGAAVYYFKYYVSSNVNFDFSLFGTDFHMTPTSIYLVLGQAANIIGVIIA 298 Query: 283 PRLLGYFSKKSVFIGSCILGSLSCLVPYLFGDQNXXXXXXXXXXXXXXXXXXXIVSTSML 342 + KK F G+ + ++ L+ Y FG ++ + SM Sbjct: 299 TPIANKIGKKKTFFGAMAIAAILSLIFYFFGKEDVFLIMSFQVLISICAGCIFPLIWSMY 358 Query: 343 LDTIDYSEWKLGFRGEGIVFSTNTFITKFSGAVSRLIIGASLGVLNYVENQPVTPGLRHG 402 D+ DYSEWK G R G+VFS ++ KF + G LG + N T ++G Sbjct: 359 ADSADYSEWKQGRRATGLVFSASSMSQKFGWTIGGAGTGWLLGYYGFQANVEQTAVTQNG 418 Query: 403 LSLVMFLLPALCFLAAIIPILFYTISDKQRTQILMDIHS 441 + L++ +LPA+ +++ ILFY +S+++ I D++ Sbjct: 419 IQLMLSILPAIAAAISVVFILFYPLSEEKLQTIEQDLNE 457 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,059,867,231 Number of extensions: 70501194 Number of successful extensions: 249672 Number of sequences better than 1.0e-05: 1142 Number of HSP's gapped: 248359 Number of HSP's successfully gapped: 1564 Length of query: 445 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 306 Effective length of database: 1,751,175,118 Effective search space: 535859586108 Effective search space used: 535859586108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)