BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0016.p (664 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4BDW5.1 B4BDW5_CLOTM CheA signal transduction histidine kinase 486 e-135 A3DHQ7.1 A3DHQ7_CLOTH CheA signal transduction histidine kinases 486 e-135 Q2RKH9.1 Q2RKH9_MOOTA CheA signal transduction histidine kinases 481 e-134 Q3ADH0.1 Q3ADH0_CARHZ Chemotaxis protein CheA 467 e-129 A4J797.1 A4J797_DESRM CheA signal transduction histidine kinase 454 e-125 >B4BDW5.1 B4BDW5_CLOTM CheA signal transduction histidine kinase Length = 702 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 271/679 (39%), Positives = 421/679 (62%), Gaps = 41/679 (6%) Query: 11 FIEELNDQLERMDQSLLALEQSP-SAELIQTIFRAAHTIKGSSSTMGFKEMSDLTHEVEF 69 FI E+ +QL+ ++ +++ LE++ +AE++Q +FRAAHT+KGSS+TMGF++M LTHE+E Sbjct: 14 FIGEVEEQLQLLENNVVELEKNGGTAEVVQELFRAAHTLKGSSATMGFEKMKTLTHEMEN 73 Query: 70 ILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYISGSEY--TNCSSVVSEIKAL----- 122 +L+ +R EI+ +ID LF LD + +L+ +++S S T + V++++K + Sbjct: 74 VLDKIRNGLLEISRPVIDVLFECLDCLNMLKEDFVSDSNNVKTEITPVITKLKEISSENE 133 Query: 123 ---------LGKPAEPERNRLPLPVXXXXXXXXXXXXVGAGEQLIAVSITLKEDCLMKAA 173 + E R P+ V +G G+ ++ + + ED MK+ Sbjct: 134 TNNQNSDSDKAENLETGRREQPIFVLDEKQQEQINQALGIGQNVLVCEVEILEDSQMKSV 193 Query: 174 RHFILLQRMEAVCGTVIAVSLFPASAPGTDE---DDRYGRFTVVAATMKEQQQIQDQLGD 230 R +++ + GTVI + P E D G+ + T +++ ++ + Sbjct: 194 RACLIMNFLNE-WGTVINM------VPNVMEIPIDSDVGKVAFLVVTQMSADELRQKVQN 246 Query: 231 D-SDIQSLDIAPF----KLKQSKEAEKIEHAPEASTQQGNPKAEERGKGMHPTVRVNVER 285 D DI+ + + P+ + Q+K+ E + G A E + +H TVR++V+R Sbjct: 247 DLMDIKEVRVFPYFIQNSISQTKDGET--GVRDKDNSSGVKTATEEKRVVH-TVRIDVDR 303 Query: 286 LDHLMNLVGELLIEQTSLADLSAAGQRSDPA-RVLPDISSVSDHMGSIIKELQDGVMKTR 344 L+ +M+LVGEL+IEQ +A ++ P+ + D+ +S+ + +I ELQ+G+MKTR Sbjct: 304 LERMMDLVGELVIEQIRIAQVANNLYNQYPSDETIDDLIGISNRVSILINELQEGIMKTR 363 Query: 345 MLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIRNSADHG 404 M+P+ QLFSRFPR+VRDL+ L+K++ LV++GGETE+DR I+EE+SDPLIHLIRN+ DHG Sbjct: 364 MIPVQQLFSRFPRMVRDLSVSLNKEVNLVLEGGETEIDRTIMEEMSDPLIHLIRNAIDHG 423 Query: 405 IESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGIITEEQA 464 IE+P +R GKP +G + +T+ E+++V+I +EDDG GID +IK SA+ K I+TE++A Sbjct: 424 IENPEIRKKLGKPEQGTLRVTALPEDSNVIITVEDDGAGIDPQEIKQSAIKKRIVTEQEA 483 Query: 465 GYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPGKGTVFT 524 +T Q+ ++LIF+ GFST+ VS+VSGRGVGMDIV++ I +LNGIID+ET G GT F Sbjct: 484 NNMTEQQLINLIFQTGFSTSQKVSDVSGRGVGMDIVKTHIEKLNGIIDVETCAGSGTKFI 543 Query: 525 ----IRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGRIV 580 I+LPLTLAI+KGLLVK++ LPM NV EIVR EI+ + G+ + R + Sbjct: 544 IKLPIKLPLTLAILKGLLVKISNETYALPMNNVVEIVRKPKNEIESINGQAVAVIRDRAI 603 Query: 581 PLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTLNH 640 PL WL D PR T+ +V++ +K VDE+IGNQE+V+ +LG+Y+G + Sbjct: 604 PLIWLHDYFGIPRGNERKNTL-IVLLGIAEKRFGLVVDELIGNQEIVVTNLGSYIGKVEG 662 Query: 641 LSGATILGNGRVALILDAA 659 +SGATILG+ VA ILD Sbjct: 663 ISGATILGDRSVACILDVV 681 >A3DHQ7.1 A3DHQ7_CLOTH CheA signal transduction histidine kinases Length = 702 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 271/679 (39%), Positives = 421/679 (62%), Gaps = 41/679 (6%) Query: 11 FIEELNDQLERMDQSLLALEQSP-SAELIQTIFRAAHTIKGSSSTMGFKEMSDLTHEVEF 69 FI E+ +QL+ ++ +++ LE++ +AE++Q +FRAAHT+KGSS+TMGF++M LTHE+E Sbjct: 14 FIGEVEEQLQLLENNVVELEKNGGTAEVVQELFRAAHTLKGSSATMGFEKMKTLTHEMEN 73 Query: 70 ILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYISGSEY--TNCSSVVSEIKAL----- 122 +L+ +R EI+ +ID LF LD + +L+ +++S S T + V++++K + Sbjct: 74 VLDKIRNGLLEISRPVIDVLFECLDCLNMLKEDFVSDSNNVKTEITPVITKLKEISSENE 133 Query: 123 ---------LGKPAEPERNRLPLPVXXXXXXXXXXXXVGAGEQLIAVSITLKEDCLMKAA 173 + E R P+ V +G G+ ++ + + ED MK+ Sbjct: 134 TNNQNSDSDKAENLETGRREQPIFVLDEKQQEQINQALGIGQNVLVCEVEILEDSQMKSV 193 Query: 174 RHFILLQRMEAVCGTVIAVSLFPASAPGTDE---DDRYGRFTVVAATMKEQQQIQDQLGD 230 R +++ + GTVI + P E D G+ + T +++ ++ + Sbjct: 194 RACLIMNFLNE-WGTVINM------VPNVMEIPIDSDVGKVAFLVVTQMSADELRQKVQN 246 Query: 231 D-SDIQSLDIAPF----KLKQSKEAEKIEHAPEASTQQGNPKAEERGKGMHPTVRVNVER 285 D DI+ + + P+ + Q+K+ E + G A E + +H TVR++V+R Sbjct: 247 DLMDIKEVRVFPYFIQNSISQTKDGET--GVRDKDNSSGVKTATEEKRVVH-TVRIDVDR 303 Query: 286 LDHLMNLVGELLIEQTSLADLSAAGQRSDPA-RVLPDISSVSDHMGSIIKELQDGVMKTR 344 L+ +M+LVGEL+IEQ +A ++ P+ + D+ +S+ + +I ELQ+G+MKTR Sbjct: 304 LERMMDLVGELVIEQIRIAQVANNLYNQYPSDETVDDLIGISNRVSILINELQEGIMKTR 363 Query: 345 MLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIRNSADHG 404 M+P+ QLFSRFPR+VRDL+ L+K++ LV++GGETE+DR I+EE+SDPLIHLIRN+ DHG Sbjct: 364 MIPVQQLFSRFPRMVRDLSVSLNKEVNLVLEGGETEIDRTIMEEMSDPLIHLIRNAIDHG 423 Query: 405 IESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGIITEEQA 464 IE+P +R GKP +G + +T+ E+++V+I +EDDG GID +IK SA+ K I+TE++A Sbjct: 424 IENPEIRKKLGKPEQGTLRVTALPEDSNVIITVEDDGAGIDPQEIKQSAIKKRIVTEQEA 483 Query: 465 GYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPGKGTVFT 524 +T Q+ ++LIF+ GFST+ VS+VSGRGVGMDIV++ I +LNGIID+ET G GT F Sbjct: 484 NNMTEQQLINLIFQTGFSTSQKVSDVSGRGVGMDIVKTHIEKLNGIIDVETCAGSGTKFI 543 Query: 525 ----IRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGRIV 580 I+LPLTLAI+KGLLVK++ LPM NV EIVR EI+ + G+ + R + Sbjct: 544 IKLPIKLPLTLAILKGLLVKISNETYALPMNNVVEIVRKPKNEIESINGQAVAVIRDRAI 603 Query: 581 PLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTLNH 640 PL WL D PR T+ +V++ +K VDE+IGNQE+V+ +LG+Y+G + Sbjct: 604 PLIWLHDYFGIPRGNERKNTL-IVLLGIAEKRFGLVVDELIGNQEIVVTNLGSYIGKVEG 662 Query: 641 LSGATILGNGRVALILDAA 659 +SGATILG+ VA ILD Sbjct: 663 ISGATILGDRSVACILDVV 681 >Q2RKH9.1 Q2RKH9_MOOTA CheA signal transduction histidine kinases Length = 685 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 283/682 (41%), Positives = 429/682 (62%), Gaps = 32/682 (4%) Query: 2 MELSAYRDIFIEELNDQLERMDQSLLALEQSPS-AELIQTIFRAAHTIKGSSSTMGFKEM 60 +++S Y IF++E +QL+++D++++ LEQ+P EL+ TIFRAAHT+KGSS++MGF + Sbjct: 4 LDMSQYLGIFLDEAEEQLQQLDEAVVQLEQTPDDQELLNTIFRAAHTLKGSSASMGFNRL 63 Query: 61 SDLTHEVEFILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYISG-SEYTNCSSVVSEI 119 + LTH +E +L+ +R+ K ++ +ID L ++D ++ L+ +G E + + VV+ + Sbjct: 64 ATLTHRMESVLDSLRQGKLAVSREIIDILLASVDTLRALKDSIAAGKGEEGDVNEVVARL 123 Query: 120 KALLGKPAEPERNRLPLPVXXXXXXXXXXXXVGA---GEQLIAVSITLKEDCLMKAARHF 176 +A+L PA P N+ A G + + + L+ C MK+AR + Sbjct: 124 EAVLAGPAAPVANKAVANAELTLDDIEQNVIRAAEVKGFRAYEIRVQLEAGCQMKSARAY 183 Query: 177 ILLQRMEAVCGTVIAVSLFPASAPGTD--EDDRYG-RFTVVAATMKEQQQIQDQLGDDSD 233 ++ ++ + G +I S P T E +++ FT+ + ++ + + + S+ Sbjct: 184 LVFNNLKEL-GEIIK------SVPHTQDLEAEKFDDTFTLAFVSREDADTLANVVKSVSE 236 Query: 234 IQSLDIAPFKLKQSKEAEKIEHAPEASTQQGNPKAEERG--------KGMH---PTVRVN 282 I+ + + P L++ + A A A T G P E G G H TVRV+ Sbjct: 237 IKDVLVRPIVLEEDQPA-----AARAGTAPGKPGVEAAGGKNGTTAPAGEHHVNQTVRVD 291 Query: 283 VERLDHLMNLVGELLIEQTSLADL-SAAGQRSDPARVLPDISSVSDHMGSIIKELQDGVM 341 V+RL++LMNLVGEL+I++T L ++ + R +L + VS H+G I +LQ+ +M Sbjct: 292 VQRLENLMNLVGELVIDRTRLTEVGNGLKNRLGNEELLETLEEVSLHIGRITSDLQEEIM 351 Query: 342 KTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIRNSA 401 K RM PIDQ+F+RFPR+VRDLA+K K+I+ +I+G ETELDR +IEE+ DPLIHL+RN+ Sbjct: 352 KARMFPIDQVFNRFPRMVRDLARKAGKEIDFIIEGRETELDRTVIEEIGDPLIHLLRNAI 411 Query: 402 DHGIESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGIITE 461 DHGIE P VR+ +GKP G + L +FH+EN +VI +EDDG G+DA KIKA A+ +G+I+ Sbjct: 412 DHGIEEPEVRLRQGKPRHGTVRLKAFHQENQIVITVEDDGAGMDAEKIKAKAIARGLISP 471 Query: 462 EQAGYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPGKGT 521 E A L+ +EA+ LIF PG ST+ V++VSGRGVGMDIVR+ I ++NG IDI T PGKGT Sbjct: 472 ESAARLSRREALDLIFLPGLSTSDKVTDVSGRGVGMDIVRNHIEKINGTIDIRTTPGKGT 531 Query: 522 VFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGRIVP 581 FTI+LPLTLAI + LLV V GRV P+ NV EI+ + P+ IQ V +Q ++ GR++P Sbjct: 532 CFTIKLPLTLAINRSLLVHVDGRVYAFPLANVVEIIDVTPDSIQHVHRQQVVVVRGRVLP 591 Query: 582 LSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTLNHL 641 L +L L + T +VIV +K F VD++IG QE+VIKSLG ++G + + Sbjct: 592 LIYLGQALGLGTPIPAADTYAVVIVGLAEKQVGFIVDDLIGEQEIVIKSLGNFIGKIPGI 651 Query: 642 SGATILGNGRVALILDAAYLVS 663 +GATI+G+G VALILD L++ Sbjct: 652 AGATIMGDGSVALILDVRSLMN 673 >Q3ADH0.1 Q3ADH0_CARHZ Chemotaxis protein CheA Length = 698 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 277/680 (40%), Positives = 422/680 (62%), Gaps = 37/680 (5%) Query: 10 IFIEELNDQLERMDQSLLALEQS--PSAELIQTIFRAAHTIKGSSSTMGFKEMSDLTHEV 67 +F++EL ++++ + +LL LEQS +++Q IFRAAHTIKGSS+ MGF +MS LTHE+ Sbjct: 9 VFLDELEEKIQVLTDNLLLLEQSGEDDPKVLQEIFRAAHTIKGSSAVMGFTKMSSLTHEI 68 Query: 68 EFILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYIS-GSEYTNCSSVVSEIK-ALLGK 125 E I + +R + + TS LI+ LF ALDA+K+LR E ++ +E + + +++++K A+ G Sbjct: 69 ENIFDKMRNNELKPTSSLINVLFEALDALKILRDEIVAENAENYDTTEIIAKLKEAVAGT 128 Query: 126 PAEPERNRLPLPVXXXXXXXXXXXXVG---AGEQLIAVSITLKEDCLMKAARHFILLQRM 182 A+ + P G QL + + L +MK+ R FI+LQ++ Sbjct: 129 GAKSSETQAPKGETAEFSGDEIEKIREFELKGYQLSEIKVYLDPAAVMKSVRAFIVLQQL 188 Query: 183 EAVCGTVIAVSLFPASAPGTDEDDRYGRFTVVAATMKEQQQIQDQLGDDSDIQSLDIAPF 242 + + GTVI PA +D + F V AT +++ ++Q+ L +++ ++I+ Sbjct: 189 KEL-GTVIKT--VPAEEILVKTED-FNDFIVYLATNEDEDRLQNILLTIPEVERVEISAK 244 Query: 243 KLKQSKEAEKIEHAPEASTQQG----------NPKAEERGK----------GMHPTVRVN 282 +L+ + EA E E + Q P AE + K + TVRV+ Sbjct: 245 QLEDNIEARNEEQKVEKTDVQDIVSEKTATVEKPAAEVKTKTSAVAPAEEKKVTQTVRVD 304 Query: 283 VERLDHLMNLVGELLIEQTSLADLSAAGQRSDPAR----VLPDISSVSDHMGSIIKELQD 338 V++LD LMNLVGEL+I++T L LS + +R ++ ++ +S H+G I +LQD Sbjct: 305 VQKLDTLMNLVGELVIDRTRL--LSVIDKLYTLSRENNELVETLAEISSHVGQITTDLQD 362 Query: 339 GVMKTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHLIR 398 +MK RMLPI Q+F+RFPR+VRDLAQKL+K++E +I+G ETELDR +IE + DPLIHLIR Sbjct: 363 VIMKARMLPIAQVFNRFPRMVRDLAQKLNKEVEFIIEGKETELDRNVIEVIGDPLIHLIR 422 Query: 399 NSADHGIESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGKGI 458 N+ DHGIE P R GKP GR+ L + + EN++VI +EDDG+GID ++ A+ KG+ Sbjct: 423 NALDHGIEPPEEREKLGKPRAGRLRLAAAYLENNIVITVEDDGRGIDPDAVRKKAVEKGL 482 Query: 459 ITEEQAGYLTAQEAVHLIFEPGFSTASAVSEVSGRGVGMDIVRSQIGRLNGIIDIETEPG 518 I+E +A L+ +EA+ LIF G STA V+++SGRGVGMDIV+SQI ++NG + +E++ G Sbjct: 483 ISEREAEMLSDKEAIKLIFRSGLSTAQKVNDISGRGVGMDIVKSQIEQINGEVQVESQVG 542 Query: 519 KGTVFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIINHGR 578 KGT FTIRLPLTLAII+ LLV+ G++ P+ V E + + EE++ V ++ G+ Sbjct: 543 KGTTFTIRLPLTLAIIRALLVEHQGQIYAFPLNFVQETLIVGQEELRKVSDYDVMLLRGK 602 Query: 579 IVPLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYLGTL 638 ++PL L + P + + +VI+ + + VD ++G QE+VIKSLG YLG + Sbjct: 603 VLPLISLSKLFNLPEDQEQKQWYFVVILGTGNHRLGVIVDNLLGEQEIVIKSLGEYLGQV 662 Query: 639 NHLSGATILGNGRVALILDA 658 LSGATILG+GR+ LI+DA Sbjct: 663 KGLSGATILGDGRIGLIIDA 682 >A4J797.1 A4J797_DESRM CheA signal transduction histidine kinase Length = 696 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 272/687 (39%), Positives = 417/687 (60%), Gaps = 46/687 (6%) Query: 10 IFIEELNDQLERMDQSLLALEQSPSA-ELIQTIFRAAHTIKGSSSTMGFKEMSDLTHEVE 68 +FI+EL ++++ ++ LLALE+ S ++IQ IFRAAHT+KGSS MG++ M+ LTHE+E Sbjct: 9 VFIDELEEKIQVINDGLLALERDESNPDIIQEIFRAAHTVKGSSGIMGYQNMASLTHEME 68 Query: 69 FILEWVREKKPEITSVLIDTLFRALDAMKLLRTEYISGSEYTNCSSVVSEIKALL-GKPA 127 + + +R + +TS +I+ LF ALD +K L+ E + S VV +IKA + G A Sbjct: 69 NLFDKIRHGEIHVTSEMINVLFEALDTLKALKEEVTGEGPAVDTSVVVEKIKAFVTGGDA 128 Query: 128 EPERNRLPL--PVXXXXXXXXXXXXVGAGE--------------QLIAVSITLKEDCLMK 171 PE P PV + G+ Q ++I + DC MK Sbjct: 129 APEIPEPPKENPVASVKAAATVRQWLEIGDVEENVIREAELRGFQCYRIAIDIDRDCQMK 188 Query: 172 AARHFILLQRMEAVCGTVIAVSLFPASAPGTDEDDRYGR----FTVVAATMKEQQQIQDQ 227 R F++ + ++ V G +I S P ED + G+ F V+ T ++Q QI++ Sbjct: 189 NVRAFLVFETLQQV-GEIIK------SEPSA-EDIQEGKYDISFQVLLITKEDQDQIKNL 240 Query: 228 LGDDSDIQSLDIAPFKLKQSKEAEKIEHAPEAST---------QQGNP-KAEERGKGMHP 277 + S++ ++ P L E + P+A T Q+ N K E + Sbjct: 241 MVTISEVTEAEVQPVLLNS---IEAVIEQPKAQTTTTINRPVEQENNAVKLETTERKTVK 297 Query: 278 TVRVNVERLDHLMNLVGELLIEQTSLADLSAAGQ-RSDPARVLPDISSVSDHMGSIIKEL 336 TVRV+V +LD+LMNLVGEL+I++T L + + R ++ I+ +S+H+G + +L Sbjct: 298 TVRVDVTKLDNLMNLVGELVIDRTRLNRFAEIFESRFGSDEMVEAINEISNHLGQVTGDL 357 Query: 337 QDGVMKTRMLPIDQLFSRFPRLVRDLAQKLDKDIELVIQGGETELDRMIIEELSDPLIHL 396 Q+ +MK RMLP+ QLF+RFPR+VRD AQKL K+I+ V++G ETELDR +IE + DP+IHL Sbjct: 358 QEQIMKARMLPVAQLFNRFPRMVRDTAQKLGKEIDFVVEGKETELDRNVIEVIGDPIIHL 417 Query: 397 IRNSADHGIESPGVRISEGKPAKGRITLTSFHEENHVVIRLEDDGQGIDASKIKASALGK 456 IRNS DHGIE P R + GK G + L + + E+H+VI ++DDG+G+DA+KI+ A+ Sbjct: 418 IRNSIDHGIELPAERQAAGKNRVGTLLLKASYAESHIVITVKDDGRGMDANKIRNKAVEM 477 Query: 457 GIITEEQAGYLTAQEAVHLIFEPGFSTASA-VSEVSGRGVGMDIVRSQIGRLNGIIDIET 515 G + E A ++ ++A+ LIF+ GFST + VS++SGRGVGMD+V + I ++NG ++++T Sbjct: 478 GFVDRETADRMSDRDALQLIFKAGFSTKNNEVSDLSGRGVGMDVVNTAIEQINGTVELDT 537 Query: 516 EPGKGTVFTIRLPLTLAIIKGLLVKVAGRVLILPMYNVAEIVRIAPEEIQVVQGEQAIIN 575 + G GT TIRLPLTLAII+ L+V + +V P+ NV+E +RI +EI+ + + I+ Sbjct: 538 KLGAGTTITIRLPLTLAIIRALMVTLGNQVYAFPLTNVSETIRITDQEIRRIGNNEVIVV 597 Query: 576 HGRIVPLSWLRDKLHYPRAERSTRTIPLVIVRSVDKIAAFAVDEIIGNQEVVIKSLGAYL 635 +I+PL+ + + E S++ + +VI+ S DK A VD+++G QE+VIKSLG YL Sbjct: 598 RDKILPLARMGRLFNCAECEESSK-MYVVILGSGDKKIAVVVDKLLGEQEIVIKSLGDYL 656 Query: 636 GTLNHLSGATILGNGRVALILDAAYLV 662 G + LSGA ILG+G+VALI+D LV Sbjct: 657 GQVQGLSGACILGDGKVALIVDVRGLV 683 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,600,296,344 Number of extensions: 145400451 Number of successful extensions: 484877 Number of sequences better than 1.0e-05: 1644 Number of HSP's gapped: 481933 Number of HSP's successfully gapped: 2413 Length of query: 664 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 521 Effective length of database: 1,713,491,058 Effective search space: 892728841218 Effective search space used: 892728841218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)