BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0335.0012.p
         (183 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KCZ8.1 B3KCZ8_9BACI Putative uncharacterized protein                 97   8e-19

>B3KCZ8.1 B3KCZ8_9BACI Putative uncharacterized protein
          Length = 138

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 1/114 (0%)

Query: 70  EMENGSGPVPHDGVLFIREMRQRGGGGFKNTFTTVPDYGKELVIQIKNNGSQGTVIANVT 129
           E+E      P   V +I   + +    ++NTFTT+P+ G +L +++ N  S G V+  V 
Sbjct: 25  EVEGADSNTPFT-VQYINLDKYQSVNAYENTFTTMPEQGSKLTVKVHNKNSTGHVMLKVY 83

Query: 130 RGSHEYGFVDVKPGESLTRTFRMSDGSGMTGHWKVYVTTEDGHKIDISVEAGQH 183
           RG+ E+G+ DVK G   TRTF M DG G+TG WKVY+T+ +G  +++ ++AGQH
Sbjct: 84  RGTEEFGYADVKAGTEGTRTFAMHDGRGVTGDWKVYITSRNGQIMNLQIQAGQH 137


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,014,119,479
Number of extensions: 38845798
Number of successful extensions: 84688
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 84688
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 56
Effective length of database: 1,864,227,298
Effective search space: 104396728688
Effective search space used: 104396728688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)