BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0011.p (249 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KJQ5.1 A9KJQ5_CLOPH Abortive infection protein 85 5e-15 B6FMW8.1 B6FMW8_9CLOT Putative uncharacterized protein 76 3e-12 C0BEI9.1 C0BEI9_9FIRM Putative uncharacterized protein 76 3e-12 C2GG01.1 C2GG01_9CORY Abortive infection protein 63 2e-08 C0VTY6.1 C0VTY6_9CORY Abortive infection protein 63 2e-08 >A9KJQ5.1 A9KJQ5_CLOPH Abortive infection protein Length = 253 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 1/218 (0%) Query: 1 MKEHLAKKGHPVLFSLMLGIVLTLLVXXXXXXXXIMELDDTGGRFAQACAFFLMAVIVTV 60 MKE +K HP +++G++ ++ LD + I + Sbjct: 1 MKESFIQK-HPYFSVILVGLLCVFFTGIGTAIPQLIGLDINEQIVVTTVFLIISIAIGII 59 Query: 61 YMSRSSRPRGSYGFKRFEGVKEKRALYYIPLLVIALIQPAMAGINTKLSWIEVGSILLLT 120 M ++ YGF+ + + +YIPLL + ++ +AG ++++S ++ +L T Sbjct: 60 IMRKTRFTLSDYGFQLSKKDTNHKVWWYIPLLAVEILPIVLAGFSSEVSVLQYFILLFFT 119 Query: 121 VCVGFTEETIFRGIIREKLRFKGPVFYIVFSSVFFGILHMANALNGTDLIHIVLQVINAX 180 V VGF EE FRG+ + + KG I+ SS+ FG+LH+AN NG +++VLQ+ A Sbjct: 120 VAVGFNEEIYFRGLALKFMEGKGRKTAIIGSSIVFGVLHLANVFNGKSTLYLVLQLFFAF 179 Query: 181 XXXXXXXXXIETTDNIIPLIAFHFIYDALAMVCNENPD 218 + T ++ +I +H +D ++ + + D Sbjct: 180 LVGFVFAEIVSITKSLWAVIFWHAAHDYISSITGDALD 217 >B6FMW8.1 B6FMW8_9CLOT Putative uncharacterized protein Length = 247 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 3/171 (1%) Query: 55 AVIVTVYMSRSSRPRGSYGFKRFEGVKEKRALYYIPLLVIALIQPAMAGINTKLSWIEVG 114 +++ V++S+ + + YG F G + LY+ PLL+I I G+ KLS +E Sbjct: 49 TLLLLVFVSKHNL-KEKYGLCSFNG-SLRNFLYFTPLLLIMSIN-LWNGVTMKLSVLETV 105 Query: 115 SILLLTVCVGFTEETIFRGIIREKLRFKGPVFYIVFSSVFFGILHMANALNGTDLIHIVL 174 +L +CVGF EE IFRG + + L IV SSV FGI H+ N LNG DLI +L Sbjct: 106 LYILSMLCVGFIEEIIFRGFLFKALYNDNVKLAIVISSVTFGIGHIVNLLNGKDLIPTLL 165 Query: 175 QVINAXXXXXXXXXXIETTDNIIPLIAFHFIYDALAMVCNENPDMEIPAVA 225 QV A +++P I H ++ ++ EN M+ ++ Sbjct: 166 QVCYAIAIGFLFTIIFYKGKSLLPCIIAHSFVNSSSVFAVENSSMKFHIIS 216 >C0BEI9.1 C0BEI9_9FIRM Putative uncharacterized protein Length = 192 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 69 RGSYGFKRFEGVKEKRALYYIPLLVIALIQPAMAGINTKLSWIEVGSILLLTVCVGFTEE 128 + YG F G + LY+ PLL+I I G+ KLS +E +L +CVGF EE Sbjct: 7 KEKYGLCSFNG-SLRNFLYFTPLLLIMSIN-LWNGVTMKLSVLETVLYILSMLCVGFIEE 64 Query: 129 TIFRGIIREKLRFKGPVFYIVFSSVFFGILHMANALNGTDLIHIVLQVINAXXXXXXXXX 188 IFRG + + L IV SSV FGI H+ N LNG DLI +LQV A Sbjct: 65 IIFRGFLFKALYNDNVKLAIVISSVTFGIGHIVNLLNGKDLIPTLLQVCYAIAIGFLFTI 124 Query: 189 XIETTDNIIPLIAFHFIYDALAMVCNENPDMEIPAVA 225 +++P I H ++ ++ EN M+ ++ Sbjct: 125 IFYKGKSLLPCIIAHSFVNSSSVFAVENSSMKFHIIS 161 >C2GG01.1 C2GG01_9CORY Abortive infection protein Length = 246 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 37 ELDDTGG-RFAQACAFFLMAVIVTVYMSRSSRPRGSYGFKRFEGVKEKRALYYIPLLVIA 95 L+DT G +F+ + F I+ R YG R + KR ++YIPLL+ Sbjct: 29 SLNDTVGIKFSFSALFAATQTIILYLFLRRHGLFQRYGI-RSPQLSAKRFVFYIPLLI-- 85 Query: 96 LIQPAMA-GINTKLSWIEVGSILLLTVCVGFTEETIFRGIIREKLRFKGPVFYIVFSSVF 154 LI A+ GI + + +E G + L CVGF EE IFRG + + + IV SSV Sbjct: 86 LISGALWNGIGLRYTVVETGFYICLMACVGFLEELIFRGFLFRAMAEESLRQAIVVSSVT 145 Query: 155 FGILHMANALNGT--DLIHIVLQVINAXXXXXXXXXXIETTDNIIPLIAFH 203 FGI H+ N++NG+ L +LQ++ A + ++ P I H Sbjct: 146 FGIGHIVNSVNGSGQSLTVTLLQIVFAIAVGFLFVTIVYRGGSLWPCIITH 196 >C0VTY6.1 C0VTY6_9CORY Abortive infection protein Length = 246 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%) Query: 37 ELDDTGG-RFAQACAFFLMAVIVTVYMSRSSRPRGSYGFKRFEGVKEKRALYYIPLLVIA 95 L+DT G +F+ + F I+ R YG R + KR ++YIPLL+ Sbjct: 29 SLNDTVGIKFSFSALFAATQTIILYLFLRRHGLFQRYGI-RSPQLSAKRFVFYIPLLI-- 85 Query: 96 LIQPAMA-GINTKLSWIEVGSILLLTVCVGFTEETIFRGIIREKLRFKGPVFYIVFSSVF 154 LI A+ GI + + +E G + L CVGF EE IFRG + + + IV SSV Sbjct: 86 LISGALWNGIGLRYTVVETGFYICLMACVGFLEELIFRGFLFRAMAEESLRQAIVVSSVT 145 Query: 155 FGILHMANALNGT--DLIHIVLQVINAXXXXXXXXXXIETTDNIIPLIAFH 203 FGI H+ N++NG+ L +LQ++ A + ++ P I H Sbjct: 146 FGIGHIVNSVNGSGQSLTVTLLQIVFAIAVGFLFVTIVYRGGSLWPCIITH 196 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,190,586,813 Number of extensions: 41302241 Number of successful extensions: 89808 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 89847 Number of HSP's successfully gapped: 12 Length of query: 249 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 117 Effective length of database: 1,817,122,223 Effective search space: 212603300091 Effective search space used: 212603300091 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)