BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0010.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BKJ0.1 C3BKJ0_9BACI TetR family transcriptional regulator 260 5e-68 C3B3Q4.1 C3B3Q4_BACMY TetR family transcriptional regulator 256 8e-67 C3ALQ1.1 C3ALQ1_BACMY TetR family transcriptional regulator 255 2e-66 C3EKU9.1 C3EKU9_BACTK TetR family transcriptional regulator 254 4e-66 C2XBT8.1 C2XBT8_BACCE TetR family transcriptional regulator 254 4e-66 >C3BKJ0.1 C3BKJ0_9BACI TetR family transcriptional regulator Length = 211 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 127/211 (60%), Positives = 157/211 (74%), Gaps = 1/211 (0%) Query: 1 MRISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAV 60 MR KE ERRNEILDTAE LF +KGY KTTVNDIL+EIGIAKGTFY+YFKSKEEVMDA+ Sbjct: 1 MRTVKEYEERRNEILDTAEKLFVSKGYMKTTVNDILREIGIAKGTFYHYFKSKEEVMDAI 60 Query: 61 VMRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTV-RKEKMIEQFHEAENAQIHQK 119 + R + S P +TV DKL QI+M Q P KEKMIEQFH+ NA++HQK Sbjct: 61 ITRIVNADVVAAKKIASSPNITVLDKLFQILMVQVPKAGGNKEKMIEQFHQPNNAEMHQK 120 Query: 120 SLAETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLR 179 SL + IL LTPVLTEVI QGI+EK+F T YP+ETMEFL+A++Q + DEG+F W P E ++ Sbjct: 121 SLVQAILHLTPVLTEVIEQGIKEKIFETAYPQETMEFLIASAQVIFDEGLFQWQPHEAMQ 180 Query: 180 KIQAFIHIMEVTLGAEPGSFAYVTQMFSQTS 210 + +AFI+IME TLGA+ G+F Y+ + + S Sbjct: 181 RAKAFINIMETTLGAKKGTFNYILDILMRQS 211 >C3B3Q4.1 C3B3Q4_BACMY TetR family transcriptional regulator Length = 211 Score = 256 bits (655), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 126/211 (59%), Positives = 156/211 (73%), Gaps = 1/211 (0%) Query: 1 MRISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAV 60 MR KE ERRNEILDTAE LF +KGY KTTVNDIL+EIGIAKGTFY+YFKSKEEVMDA+ Sbjct: 1 MRTVKEYEERRNEILDTAEKLFVSKGYMKTTVNDILREIGIAKGTFYHYFKSKEEVMDAI 60 Query: 61 VMRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTV-RKEKMIEQFHEAENAQIHQK 119 + R + S P + V DKL QI+M Q P KEKMIEQFH+ NA++HQK Sbjct: 61 ITRIVNAGVVAAKKIASSPNIPVLDKLFQILMVQVPKAGGNKEKMIEQFHQPNNAEMHQK 120 Query: 120 SLAETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLR 179 SL + IL LTPVLTEVI QGI+EK+F T YP+ETMEFL+A++Q + DEG+F W P E ++ Sbjct: 121 SLVQAILYLTPVLTEVIEQGIKEKIFETAYPQETMEFLIASAQVIFDEGLFQWQPHEAMQ 180 Query: 180 KIQAFIHIMEVTLGAEPGSFAYVTQMFSQTS 210 + +AFI+IME TLGA+ G+F Y+ + + S Sbjct: 181 RAKAFINIMETTLGAKKGTFNYILDILMRQS 211 >C3ALQ1.1 C3ALQ1_BACMY TetR family transcriptional regulator Length = 211 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/211 (59%), Positives = 156/211 (73%), Gaps = 1/211 (0%) Query: 1 MRISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAV 60 MR KE ERRNEILDTAE LF +KGY KTTVNDIL+EIGIAKGTFY+YFKSKEEVMDA+ Sbjct: 1 MRTVKEYEERRNEILDTAEKLFVSKGYMKTTVNDILREIGIAKGTFYHYFKSKEEVMDAI 60 Query: 61 VMRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTV-RKEKMIEQFHEAENAQIHQK 119 + + + S P + V DKL QI+M Q P KEKMIEQFH+ NA++HQK Sbjct: 61 ITQIVNADVVAAKKIASSPNIPVLDKLFQILMVQVPKAGGNKEKMIEQFHQPNNAEMHQK 120 Query: 120 SLAETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLR 179 SL + IL LTPVLTEVI QGI+EK+F T YP+ETMEFL+A++Q + DEG+F W P E ++ Sbjct: 121 SLVQAILHLTPVLTEVIEQGIKEKIFETAYPQETMEFLIASAQVIFDEGLFQWQPHEAMQ 180 Query: 180 KIQAFIHIMEVTLGAEPGSFAYVTQMFSQTS 210 + +AFI+IME TLGA+ G+F Y+ + + S Sbjct: 181 RAKAFINIMETTLGAKKGTFNYILDILMRQS 211 >C3EKU9.1 C3EKU9_BACTK TetR family transcriptional regulator Length = 211 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 160/207 (77%), Gaps = 1/207 (0%) Query: 1 MRISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAV 60 MRI KE ERR EIL+TAE LF TKGY KTTVNDIL+EIGIAKGTFY+YFKSKEEVMD + Sbjct: 1 MRIVKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEI 60 Query: 61 VMRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTVR-KEKMIEQFHEAENAQIHQK 119 +MR I+ S+P + V DKL +I+M Q P + KEKMIEQFH+ NA++HQK Sbjct: 61 IMRIIKEDVTKAKRIVSNPDIPVLDKLFKILMEQSPKSGDVKEKMIEQFHQPNNAEMHQK 120 Query: 120 SLAETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLR 179 SL ++I+ L+PVLTEV+ QGIEE +F TPYP+ET+E LL+++Q + D+G+F W PEEM+R Sbjct: 121 SLVQSIIHLSPVLTEVLEQGIEEGIFSTPYPQETIELLLSSAQVIFDDGLFQWKPEEMMR 180 Query: 180 KIQAFIHIMEVTLGAEPGSFAYVTQMF 206 + +A+I +MEV++GA+ GSF Y+ ++ Sbjct: 181 RAKAYIKMMEVSVGAKEGSFDYMIEVL 207 >C2XBT8.1 C2XBT8_BACCE TetR family transcriptional regulator Length = 211 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 121/207 (58%), Positives = 160/207 (77%), Gaps = 1/207 (0%) Query: 1 MRISKEPIERRNEILDTAEGLFFTKGYNKTTVNDILQEIGIAKGTFYYYFKSKEEVMDAV 60 MRI KE ERR EIL+TAE LF TKGY KTTVNDIL+EIGIAKGTFY+YFKSKEEVMD + Sbjct: 1 MRIVKEYEERRKEILETAERLFLTKGYTKTTVNDILKEIGIAKGTFYHYFKSKEEVMDEI 60 Query: 61 VMRFIEXXXXXXXXXXSDPKLTVHDKLLQIIMAQKPDTVR-KEKMIEQFHEAENAQIHQK 119 +MR I+ S+P + V DKL +I+M Q P + KEKMIEQFH+ NA++HQK Sbjct: 61 IMRIIKEDVTKAKRIVSNPDIPVLDKLFKILMEQSPKSGDVKEKMIEQFHQPNNAEMHQK 120 Query: 120 SLAETILQLTPVLTEVINQGIEEKLFRTPYPKETMEFLLAASQFLLDEGIFMWTPEEMLR 179 SL ++I+ L+PVLTEV+ QGIEE +F TPYP+ET+E LL+++Q + D+G+F W PEEM+R Sbjct: 121 SLVQSIIHLSPVLTEVLEQGIEEGIFSTPYPQETIELLLSSAQVIFDDGLFQWKPEEMMR 180 Query: 180 KIQAFIHIMEVTLGAEPGSFAYVTQMF 206 + +A+I +MEV++GA+ GSF Y+ ++ Sbjct: 181 RAKAYIKMMEVSVGAKEGSFDYMIEVL 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,120,089,689 Number of extensions: 39069666 Number of successful extensions: 121765 Number of sequences better than 1.0e-05: 702 Number of HSP's gapped: 121693 Number of HSP's successfully gapped: 702 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)