BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0008.p (779 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9VFW3.1 A9VFW3_BACWK Putative uncharacterized protein 827 0.0 C2PW24.1 C2PW24_BACCE ABC transporter, permease protein 825 0.0 C2Y3D5.1 C2Y3D5_BACCE ABC transporter, permease protein 814 0.0 C3A5Z9.1 C3A5Z9_BACMY ABC transporter, permease protein 812 0.0 C2SKC9.1 C2SKC9_BACCE ABC transporter, permease protein 811 0.0 >A9VFW3.1 A9VFW3_BACWK Putative uncharacterized protein Length = 779 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/780 (51%), Positives = 573/780 (73%), Gaps = 2/780 (0%) Query: 1 MLLQMVKRDIRRNKIISVGLVLFIMLSALLAASATHILVELSGSLRSLLVQAQAPHFVQM 60 M+ +M+KRD +NK+I L +FIMLS+LL ASA+ ++ L S L + APHFVQM Sbjct: 1 MIRRMLKRDFSQNKMIITILFMFIMLSSLLIASASSNVINLLNSTDQLFKVSNAPHFVQM 60 Query: 61 HSGPINADAIREFTANNPLVKQQQTQEMLNIDGSRVYLGESTRSEGSSVMDISFVRQNPA 120 H+G IN +I F A P VK+QQT EM+ I GS +++ + ++E +SVMDISFV+QN Sbjct: 61 HAGEINQKSIDSFVAQTPFVKKQQTAEMVQIGGSNIFIKKKNQAEHNSVMDISFVKQNTI 120 Query: 121 FDYLLNLDNQIIEVPEGNIAVPIYYMQQNNLHIGDQVKVSDGPDEWIYTISDFVRDVQMN 180 FD+LL+L+N+ I+V +G I VPIYYMQ+ NL IGD++ V +E +TIS FVRDVQMN Sbjct: 121 FDFLLDLNNESIDVRKGEIGVPIYYMQKYNLRIGDKIWVVKNNNELEFTISAFVRDVQMN 180 Query: 181 PSLVSSKRFVVNESDYRLLKGKLGEIEYLIEFQLNDSSRLAEFRNAYKASNLPDKGPNID 240 PSLVSSKRFV+++ D+ +KG GE EYLIEFQL D +++ EF Y++SNLP KGP+I Sbjct: 181 PSLVSSKRFVISDEDFERIKGNFGESEYLIEFQLTDLTKINEFETLYQSSNLPQKGPSIT 240 Query: 241 YPLLKTLNALTDGIIAIVIIAASMLLIVIACLCLRFTLLATLEEDYREIGVMKAIGISRK 300 Y L KTLN+LTDGIIA V+I S LL++IA LC+RFT++ ++EEDYREIGVMKAIGI K Sbjct: 241 YSLFKTLNSLTDGIIAAVLIIISALLMLIAILCIRFTIMTSMEEDYREIGVMKAIGIQSK 300 Query: 301 DIRKLYFGKYFILAALACCGGYGLSFAVLGLFTSNISLYMGTAPASLLKIMVPIFAAGLI 360 DI+KLY KY +++A+ C GY LS V +FTSNI+LYMGTA S+L +VP+ L+ Sbjct: 301 DIQKLYVTKYVVISAIGCICGYILSLFVTKIFTSNIALYMGTANKSILYYVVPLIVTTLL 360 Query: 361 FGLVMFFCRIILGRFGRISAAKALRTGTLGTGHRHNRRY-QLSRRKYVHVNIFLGIKDVC 419 F V+ FCRIIL F RI+A ALR+ G R RR+ L + K +VNIF+GI+DV Sbjct: 361 FLAVILFCRIILRNFRRITAIDALRSRD-KLGKRKIRRFFSLYQTKITNVNIFIGIQDVV 419 Query: 420 RRFSMFGILFVVMVICLFLIIVPVNLLHTLKSPNFISYMGVGQSDLRIDLQSAGDTEQRY 479 +RF ++ +L +V++I +F+I+VPVN L+T++SP F++YMG G+SD+RIDLQ + + E+R+ Sbjct: 420 KRFKLYRVLSIVLIIAVFMIVVPVNFLYTIQSPQFVNYMGTGKSDIRIDLQQSENIEKRF 479 Query: 480 HVMLSALKNDPDIERLSPLVTSRFKVLGNDGLWANLNVETGDFSIFPLSYLHGTAPEAGN 539 + ++S + ND ++E+ + VTS FK++ DG NLNVE GDF+ FP+ Y+ G AP+ N Sbjct: 480 NDVISYVGNDEEVEKYAAFVTSTFKMVKADGTHENLNVEVGDFAQFPIEYVQGMAPKNEN 539 Query: 540 EIALSDLNARELNKKVGDILILEAGGKKLDVTVSGIYQDITNGGRTAKARIGYDRKNVLW 599 EIALS +NA EL K +GD ++L GK+ +T+SGIYQD+TNGG+TAKA Y+++N+LW Sbjct: 540 EIALSYMNANELKKNIGDEIVLFVEGKEKMLTISGIYQDVTNGGKTAKASFSYNKENILW 599 Query: 600 YIVALDLKPGVSATDKMKQYEQSFSSAKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLA 659 Y+V +D+KP V+ +K+K+Y+Q+F+SAKIT D+YLSQTLG TI +L+LVT +AI +++ Sbjct: 600 YVVNVDMKPKVNLQEKVKEYKQNFNSAKITDTDNYLSQTLGETIKQLRLVTQVAILIAIL 659 Query: 660 VTIMMTSLFLKMLLAKDTSQIAIMKSMGFTHRDICWQYLTKIVSVASIGIVSGTFASGTI 719 +++++T++F KMLL KD+SQI IMKS+GF+++DI QY+T+ +S+ +GI++GTF + T Sbjct: 660 ISVLITAMFFKMLLVKDSSQILIMKSIGFSYKDIRIQYVTRSISIVLVGILTGTFIAATF 719 Query: 720 GEALVRLLGSMMGASRIELAAQPLLAYLVLPCGYLLTVGLAAIISTLSVKRVSNAQHTAE 779 GE L+ LGS MGA+ I+ P+++Y++ P ++V +A I S+ +VK+ ++ + E Sbjct: 720 GETLISWLGSFMGAAHIKFVVNPIISYVICPAILFISVTVATIFSSFTVKQTNDLKLNGE 779 >C2PW24.1 C2PW24_BACCE ABC transporter, permease protein Length = 775 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/776 (51%), Positives = 570/776 (73%), Gaps = 2/776 (0%) Query: 5 MVKRDIRRNKIISVGLVLFIMLSALLAASATHILVELSGSLRSLLVQAQAPHFVQMHSGP 64 M+KRD +NK+I L +FIMLS+LL ASA+ ++ L S L + APHFVQMH+G Sbjct: 1 MLKRDFSQNKMIITILFMFIMLSSLLIASASSNVINLLNSTDQLFKVSNAPHFVQMHAGE 60 Query: 65 INADAIREFTANNPLVKQQQTQEMLNIDGSRVYLGESTRSEGSSVMDISFVRQNPAFDYL 124 IN +I F A P VK+QQT EM+ I GS +++ + ++E +SVMDISFV+QN FD+L Sbjct: 61 INQKSIDSFVAQTPFVKKQQTAEMVQIGGSNIFIKKKNQAEHNSVMDISFVKQNTIFDFL 120 Query: 125 LNLDNQIIEVPEGNIAVPIYYMQQNNLHIGDQVKVSDGPDEWIYTISDFVRDVQMNPSLV 184 L+L+N++I+V +G I VPIYYMQ+ NL IGD++ V +E +TIS FVRDVQMNPSLV Sbjct: 121 LDLNNELIDVRKGEIGVPIYYMQKYNLRIGDKIWVVKNNNELEFTISAFVRDVQMNPSLV 180 Query: 185 SSKRFVVNESDYRLLKGKLGEIEYLIEFQLNDSSRLAEFRNAYKASNLPDKGPNIDYPLL 244 SSKRFV++++D+ +KG GE EYLIEFQL D +++ EF Y++SNLP KGP+I Y L Sbjct: 181 SSKRFVISDADFERIKGNFGESEYLIEFQLTDLTKINEFETLYQSSNLPQKGPSITYSLF 240 Query: 245 KTLNALTDGIIAIVIIAASMLLIVIACLCLRFTLLATLEEDYREIGVMKAIGISRKDIRK 304 KTLN+LTDGIIA V+I S LL++IA LC+RFT++ ++EEDYREIGVMKAIGI KDI+K Sbjct: 241 KTLNSLTDGIIAAVLIIISALLMLIAILCIRFTIMTSMEEDYREIGVMKAIGIQSKDIQK 300 Query: 305 LYFGKYFILAALACCGGYGLSFAVLGLFTSNISLYMGTAPASLLKIMVPIFAAGLIFGLV 364 LY KY +++A+ C GY LS V +FTSNI+LYMGTA S+L +VP+ L+F V Sbjct: 301 LYVTKYVVISAIGCICGYILSLFVTKIFTSNIALYMGTANKSILYYVVPLIVTTLLFLAV 360 Query: 365 MFFCRIILGRFGRISAAKALRTGTLGTGHRHNRRY-QLSRRKYVHVNIFLGIKDVCRRFS 423 + FCRIIL F RI+A ALR+ G R RR+ L + K +VNIF+GI+DV +RF Sbjct: 361 ILFCRIILRNFRRITAIDALRSRD-KLGKRKIRRFFSLYQTKITNVNIFIGIQDVVKRFK 419 Query: 424 MFGILFVVMVICLFLIIVPVNLLHTLKSPNFISYMGVGQSDLRIDLQSAGDTEQRYHVML 483 ++ +L +V++I +F+I+VPVN L+T++SP F++YMG G+SD+RIDLQ + + E+R++ ++ Sbjct: 420 LYRVLSIVLIIAVFMIVVPVNFLYTIQSPQFVNYMGTGKSDIRIDLQQSENIEKRFNDVI 479 Query: 484 SALKNDPDIERLSPLVTSRFKVLGNDGLWANLNVETGDFSIFPLSYLHGTAPEAGNEIAL 543 S + ND ++ER + VTS FK++ DG NLNVE GDF+ FP+ Y+ G AP+ NEIAL Sbjct: 480 SYVGNDEEVERYAAFVTSTFKMVKADGTHENLNVEVGDFAQFPIEYVKGMAPKNENEIAL 539 Query: 544 SDLNARELNKKVGDILILEAGGKKLDVTVSGIYQDITNGGRTAKARIGYDRKNVLWYIVA 603 S +NA EL K +GD ++L GK+ +T+SGIYQD+TNGG+TAKA Y+++N+LWY+V Sbjct: 540 SYMNANELKKNIGDEIVLFVEGKEKMLTISGIYQDVTNGGKTAKASFSYNKENILWYVVN 599 Query: 604 LDLKPGVSATDKMKQYEQSFSSAKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLAVTIM 663 +D+KP V+ +K+K+Y+Q+F+ AKIT D+YLSQTLG TI +L+LVT +AI +++ ++++ Sbjct: 600 VDMKPKVNLQEKVKEYKQNFNFAKITDTDNYLSQTLGETIKQLRLVTQVAILIAILISVL 659 Query: 664 MTSLFLKMLLAKDTSQIAIMKSMGFTHRDICWQYLTKIVSVASIGIVSGTFASGTIGEAL 723 +T++F KMLL KD+SQI IMKS+GF+++DI QY+T+ +S+ +GI++GTF + T GE L Sbjct: 660 ITAMFFKMLLVKDSSQIVIMKSIGFSYKDIRIQYVTRSISIVLVGILTGTFIAATFGETL 719 Query: 724 VRLLGSMMGASRIELAAQPLLAYLVLPCGYLLTVGLAAIISTLSVKRVSNAQHTAE 779 + LGS MGA+ I+ P+++Y++ P ++V +A + S+ +VK+ + + E Sbjct: 720 ISWLGSFMGAAHIKFVVNPIISYVICPAILFISVTVATLFSSFTVKQTKDLKLNGE 775 >C2Y3D5.1 C2Y3D5_BACCE ABC transporter, permease protein Length = 775 Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/776 (50%), Positives = 568/776 (73%), Gaps = 2/776 (0%) Query: 5 MVKRDIRRNKIISVGLVLFIMLSALLAASATHILVELSGSLRSLLVQAQAPHFVQMHSGP 64 M+KRD +NK+I L +FI+LS+LL ASA+ ++ L S L + APHFVQMH+G Sbjct: 1 MLKRDFSQNKMIITILFMFIILSSLLIASASSNVINLLNSTDQLFKVSNAPHFVQMHAGE 60 Query: 65 INADAIREFTANNPLVKQQQTQEMLNIDGSRVYLGESTRSEGSSVMDISFVRQNPAFDYL 124 IN +I F A P VK+QQT EM+ I GS +++ + ++E +SVMDISFV+QN FD+L Sbjct: 61 INQKSIDSFVAQTPFVKKQQTAEMVQIGGSNIFIKKKNQAEHNSVMDISFVKQNTIFDFL 120 Query: 125 LNLDNQIIEVPEGNIAVPIYYMQQNNLHIGDQVKVSDGPDEWIYTISDFVRDVQMNPSLV 184 L+L+N++I+V +G I VPIYYMQ+ NL IGD++ V +E +TIS FVRDVQMNPSLV Sbjct: 121 LDLNNELIDVRKGEIGVPIYYMQKYNLRIGDKIWVVKNNNELEFTISAFVRDVQMNPSLV 180 Query: 185 SSKRFVVNESDYRLLKGKLGEIEYLIEFQLNDSSRLAEFRNAYKASNLPDKGPNIDYPLL 244 SSKRFV+++ D+ +KG GE EYLIEFQL D +++ EF Y++SNLP KGP+I Y L Sbjct: 181 SSKRFVISDDDFERIKGNFGESEYLIEFQLTDLNKINEFETLYQSSNLPQKGPSITYSLF 240 Query: 245 KTLNALTDGIIAIVIIAASMLLIVIACLCLRFTLLATLEEDYREIGVMKAIGISRKDIRK 304 KTLN+LTDGIIA V+I S LL++IA LC+RFT++ ++EEDYREIGVMKAIGI KDI+K Sbjct: 241 KTLNSLTDGIIAAVLIIISALLMLIAILCIRFTIMTSMEEDYREIGVMKAIGIQSKDIQK 300 Query: 305 LYFGKYFILAALACCGGYGLSFAVLGLFTSNISLYMGTAPASLLKIMVPIFAAGLIFGLV 364 LY KY +++A+ C GY LS V +FTSNI+LYMGT S+L +VP+ L+F V Sbjct: 301 LYVTKYVVISAIGCICGYILSLFVTKIFTSNIALYMGTVNKSILYYVVPLIVTTLLFLAV 360 Query: 365 MFFCRIILGRFGRISAAKALRTGTLGTGHRHNRRY-QLSRRKYVHVNIFLGIKDVCRRFS 423 + FCRIIL F RI+A ALR+ G R RR+ L + K +VNIF+GI+DV +RF Sbjct: 361 ILFCRIILRNFRRITAIDALRSRD-KLGKRKIRRFFSLYQTKITNVNIFIGIQDVVKRFK 419 Query: 424 MFGILFVVMVICLFLIIVPVNLLHTLKSPNFISYMGVGQSDLRIDLQSAGDTEQRYHVML 483 ++ +L +V++I +F+I+VPVN L+T++SP F++YMG G+SD+RIDLQ + + E+R++ ++ Sbjct: 420 LYRVLSIVLIIAVFMIVVPVNFLYTIQSPQFVNYMGTGKSDIRIDLQQSENIEKRFNDVI 479 Query: 484 SALKNDPDIERLSPLVTSRFKVLGNDGLWANLNVETGDFSIFPLSYLHGTAPEAGNEIAL 543 S + ND ++E+ + VTS FK++ DG NLNVE GDF+ FP+ Y+ G AP+ NEIAL Sbjct: 480 SYVGNDEEVEKYAAFVTSTFKMVKADGTHENLNVEVGDFAQFPIEYVKGMAPKNENEIAL 539 Query: 544 SDLNARELNKKVGDILILEAGGKKLDVTVSGIYQDITNGGRTAKARIGYDRKNVLWYIVA 603 S +NA EL K +GD ++L GK+ +T+SGIYQD+TNGG+TAKA Y+++N+LWY+V Sbjct: 540 SYMNANELKKNIGDEIVLFVEGKEKMLTISGIYQDVTNGGKTAKASFSYNKENILWYVVN 599 Query: 604 LDLKPGVSATDKMKQYEQSFSSAKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLAVTIM 663 +D+KP V+ +K+K+Y+Q+F+SAKIT D+YLSQTLG TI +L+LVT + I +++ ++++ Sbjct: 600 VDMKPKVNLQEKVKEYKQNFNSAKITDTDNYLSQTLGETIKQLRLVTQVVILIAILISVL 659 Query: 664 MTSLFLKMLLAKDTSQIAIMKSMGFTHRDICWQYLTKIVSVASIGIVSGTFASGTIGEAL 723 +T++ KMLL KD+SQI IMKS+GF+++DI QY+T+ +S+ +GI++GTF + T GE L Sbjct: 660 ITAMVFKMLLVKDSSQILIMKSIGFSYKDIRIQYVTRSISIVLVGILTGTFIAATFGETL 719 Query: 724 VRLLGSMMGASRIELAAQPLLAYLVLPCGYLLTVGLAAIISTLSVKRVSNAQHTAE 779 + LGS MGA+ I+ P+++Y++ P ++V +A + S+ +VK+ ++ + E Sbjct: 720 ISWLGSFMGAAHIKFVVNPIISYVICPAILFISVTVATLFSSFTVKQTNDLKLNGE 775 >C3A5Z9.1 C3A5Z9_BACMY ABC transporter, permease protein Length = 775 Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/776 (50%), Positives = 569/776 (73%), Gaps = 2/776 (0%) Query: 5 MVKRDIRRNKIISVGLVLFIMLSALLAASATHILVELSGSLRSLLVQAQAPHFVQMHSGP 64 M+KRD +NK+I L +FIMLS+LL ASA+ ++ L S L + APHFVQMH+G Sbjct: 1 MLKRDFSQNKMIITILFMFIMLSSLLIASASSNVINLLNSTDQLFKVSNAPHFVQMHAGE 60 Query: 65 INADAIREFTANNPLVKQQQTQEMLNIDGSRVYLGESTRSEGSSVMDISFVRQNPAFDYL 124 IN +I F A P VK+QQT EM+ I GS +++ + ++E +SVMDISFV+QN FD+L Sbjct: 61 INQKSIDSFVAQTPFVKKQQTAEMVQIGGSNIFIKKKNQAEHNSVMDISFVKQNTIFDFL 120 Query: 125 LNLDNQIIEVPEGNIAVPIYYMQQNNLHIGDQVKVSDGPDEWIYTISDFVRDVQMNPSLV 184 L+L+N++I+V +G I VPIYYMQ+ +L IGD++ V +E +TIS FVRDVQMNPSLV Sbjct: 121 LDLNNELIDVRKGEIGVPIYYMQKYHLRIGDKIWVVKNNNELEFTISAFVRDVQMNPSLV 180 Query: 185 SSKRFVVNESDYRLLKGKLGEIEYLIEFQLNDSSRLAEFRNAYKASNLPDKGPNIDYPLL 244 SSKRFV+++ D+ +KG GE EYLIEFQL D +++ EF Y++SNLP KGP+I Y L Sbjct: 181 SSKRFVISDEDFERIKGNFGESEYLIEFQLTDLNKINEFETLYQSSNLPQKGPSITYSLF 240 Query: 245 KTLNALTDGIIAIVIIAASMLLIVIACLCLRFTLLATLEEDYREIGVMKAIGISRKDIRK 304 KTLN+LTDGIIA V+I S LL++IA LC+RFT++ ++EEDYREIGVMKAIGI KDI+K Sbjct: 241 KTLNSLTDGIIAAVLIIISALLMLIAILCIRFTIITSMEEDYREIGVMKAIGIQSKDIQK 300 Query: 305 LYFGKYFILAALACCGGYGLSFAVLGLFTSNISLYMGTAPASLLKIMVPIFAAGLIFGLV 364 LY KY +++A+ C GY LS V +FTSNI+LYMGTA S+L +VP+ L+F V Sbjct: 301 LYVTKYVVISAIGCICGYILSLFVTKIFTSNIALYMGTANKSILYYVVPLIVTTLLFLAV 360 Query: 365 MFFCRIILGRFGRISAAKALRTGTLGTGHRHNRRY-QLSRRKYVHVNIFLGIKDVCRRFS 423 + FCRIIL F RI+A ALR+ G R RR+ L + K +VNIF+GI+DV +RF Sbjct: 361 ILFCRIILRNFRRITAIDALRSRD-KLGKRKIRRFFSLYQTKITNVNIFIGIQDVVKRFK 419 Query: 424 MFGILFVVMVICLFLIIVPVNLLHTLKSPNFISYMGVGQSDLRIDLQSAGDTEQRYHVML 483 ++ +L +V++I +F+I+VPVN L+T++SP F++YMG G+SD+RIDLQ + + E+R++ ++ Sbjct: 420 LYRVLSIVLIIAVFMIVVPVNFLYTIQSPQFVNYMGTGKSDMRIDLQQSENIEKRFNDVI 479 Query: 484 SALKNDPDIERLSPLVTSRFKVLGNDGLWANLNVETGDFSIFPLSYLHGTAPEAGNEIAL 543 S + ND ++E+ + VTS FK++ DG NLNVE GDF+ FP+ Y+ G AP+ NEIAL Sbjct: 480 SYIGNDEEVEKYAAFVTSTFKMVKADGTNGNLNVEVGDFAQFPIEYVKGMAPKNENEIAL 539 Query: 544 SDLNARELNKKVGDILILEAGGKKLDVTVSGIYQDITNGGRTAKARIGYDRKNVLWYIVA 603 S +NA EL K +GD ++L GK+ +T+SGIYQD+TNGG+TAKA Y+++++LWY+V Sbjct: 540 SYMNANELKKNIGDEIVLFVEGKEKMLTISGIYQDVTNGGKTAKASFSYNKEDILWYVVN 599 Query: 604 LDLKPGVSATDKMKQYEQSFSSAKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLAVTIM 663 +D+KP V+ +K+K+Y+Q+ +SAKIT D+YLSQTLG TI +L+LVT +AI +++ ++++ Sbjct: 600 VDMKPKVNLQEKVKEYKQNLNSAKITDTDNYLSQTLGETIKQLRLVTQVAILIAILISVL 659 Query: 664 MTSLFLKMLLAKDTSQIAIMKSMGFTHRDICWQYLTKIVSVASIGIVSGTFASGTIGEAL 723 +T++F KMLL KD+SQI IMKS+GF+++ I QY+T+ +++ +GI++GTF + T GE L Sbjct: 660 ITAMFFKMLLVKDSSQILIMKSIGFSYKYIRIQYVTRSIAIVLVGILTGTFIAATFGETL 719 Query: 724 VRLLGSMMGASRIELAAQPLLAYLVLPCGYLLTVGLAAIISTLSVKRVSNAQHTAE 779 + LGS MGA+ I+ P+++Y++ P ++V +A + S+ +VK+ ++ + E Sbjct: 720 ISWLGSFMGAAHIKFVVNPIISYVICPAILFISVTVATLFSSFTVKQKNDLKLNGE 775 >C2SKC9.1 C2SKC9_BACCE ABC transporter, permease protein Length = 775 Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/776 (50%), Positives = 568/776 (73%), Gaps = 2/776 (0%) Query: 5 MVKRDIRRNKIISVGLVLFIMLSALLAASATHILVELSGSLRSLLVQAQAPHFVQMHSGP 64 M+KRD +NK+I L +FIMLS+LL ASA+ ++ L S L + APHFVQMH+G Sbjct: 1 MLKRDFSQNKMIITILFMFIMLSSLLIASASSNVINLLNSTDQLFKVSNAPHFVQMHAGE 60 Query: 65 INADAIREFTANNPLVKQQQTQEMLNIDGSRVYLGESTRSEGSSVMDISFVRQNPAFDYL 124 IN +I F A P VK+QQT EM+ I GS +++ + ++E +SVMDISFV+QN FD+L Sbjct: 61 INQKSIDSFVAQTPFVKKQQTAEMVQIGGSNIFIKKKNQAEHNSVMDISFVKQNTIFDFL 120 Query: 125 LNLDNQIIEVPEGNIAVPIYYMQQNNLHIGDQVKVSDGPDEWIYTISDFVRDVQMNPSLV 184 L+L+N++I+V +G I VPIYYMQ+ +L IGD++ V +E +TIS FVRDVQMNPSLV Sbjct: 121 LDLNNELIDVRKGEIGVPIYYMQKYHLRIGDKIWVVKNNNELEFTISAFVRDVQMNPSLV 180 Query: 185 SSKRFVVNESDYRLLKGKLGEIEYLIEFQLNDSSRLAEFRNAYKASNLPDKGPNIDYPLL 244 SSKRFV+++ D+ +KG GE EYLIEFQL D +++ EF Y++SNLP KGP+I Y L Sbjct: 181 SSKRFVISDEDFERIKGNFGESEYLIEFQLTDLNKINEFETLYQSSNLPQKGPSITYSLF 240 Query: 245 KTLNALTDGIIAIVIIAASMLLIVIACLCLRFTLLATLEEDYREIGVMKAIGISRKDIRK 304 KTLN+LTDGIIA V+I S LL++IA LC+RFT++ ++EE YREIGVMKAIGI KDI+K Sbjct: 241 KTLNSLTDGIIAAVLIIISALLMLIAILCIRFTIITSMEEGYREIGVMKAIGIQSKDIQK 300 Query: 305 LYFGKYFILAALACCGGYGLSFAVLGLFTSNISLYMGTAPASLLKIMVPIFAAGLIFGLV 364 LY KY +++A+ C GY LS V +FTSNI+LYMGTA S+L VP+ L+F V Sbjct: 301 LYVTKYVVISAIGCICGYILSLFVTKIFTSNIALYMGTANKSILYYFVPLIVTTLLFLAV 360 Query: 365 MFFCRIILGRFGRISAAKALRTGTLGTGHRHNRRY-QLSRRKYVHVNIFLGIKDVCRRFS 423 + FCRIIL F RI+A ALR+ G R RR+ L + K +VNIF+GI+DV +RF Sbjct: 361 ILFCRIILRNFRRITAIDALRSRD-KLGKRKIRRFFSLYQTKITNVNIFIGIQDVVKRFK 419 Query: 424 MFGILFVVMVICLFLIIVPVNLLHTLKSPNFISYMGVGQSDLRIDLQSAGDTEQRYHVML 483 ++ +L +V++I +F+I+VPVN L+T++SP F++YMG G+SD+RIDLQ + + E+R++ ++ Sbjct: 420 LYRVLSIVLIIAVFMIVVPVNFLYTIQSPQFVNYMGTGKSDMRIDLQQSENIEKRFNDVI 479 Query: 484 SALKNDPDIERLSPLVTSRFKVLGNDGLWANLNVETGDFSIFPLSYLHGTAPEAGNEIAL 543 S + ND ++E+ + VTS FK++ DG NLNVE GDF+ FP+ Y+ G AP+ NEIAL Sbjct: 480 SYIGNDEEVEKYAAFVTSTFKMVKADGTNGNLNVEVGDFAQFPIEYVKGMAPKNENEIAL 539 Query: 544 SDLNARELNKKVGDILILEAGGKKLDVTVSGIYQDITNGGRTAKARIGYDRKNVLWYIVA 603 S +NA EL K +GD ++L GK+ +T+SGIYQD+TNGG+TAKA Y+++++LWY+V Sbjct: 540 SYMNANELKKNIGDEIVLFVEGKEKMLTISGIYQDVTNGGKTAKASFSYNKEDILWYVVN 599 Query: 604 LDLKPGVSATDKMKQYEQSFSSAKITHLDSYLSQTLGNTIARLKLVTGLAIAVSLAVTIM 663 +D+KP V+ +K+K+Y+Q+ +SAKIT D+YLSQTLG TI +L+LVT +AI +++ ++++ Sbjct: 600 VDMKPKVNLQEKVKEYKQNLNSAKITDTDNYLSQTLGETIKQLRLVTQVAILIAILISVL 659 Query: 664 MTSLFLKMLLAKDTSQIAIMKSMGFTHRDICWQYLTKIVSVASIGIVSGTFASGTIGEAL 723 +T++F KMLL KD+SQI IMKS+GF+++DI QY+T+ +++ +GI++GTF + T GE L Sbjct: 660 ITAMFFKMLLVKDSSQILIMKSIGFSYKDIRIQYVTRSIAIVLVGILTGTFIAATFGETL 719 Query: 724 VRLLGSMMGASRIELAAQPLLAYLVLPCGYLLTVGLAAIISTLSVKRVSNAQHTAE 779 + LGS MGA+ I+ P+++Y++ P ++V +A + S+ +VK+ ++ + E Sbjct: 720 ISWLGSFMGAAHIKFVVNPIISYVICPAILFISVTVATLFSSFTVKQKNDLKLNGE 775 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,246,945,541 Number of extensions: 177414342 Number of successful extensions: 637593 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 637539 Number of HSP's successfully gapped: 81 Length of query: 779 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 635 Effective length of database: 1,704,070,043 Effective search space: 1082084477305 Effective search space used: 1082084477305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 135 (56.6 bits)