BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0335.0007.p (260 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W881.1 C2W881_BACCE ABC transporter, ATP-binding protein 274 7e-72 A9KPS0.1 A9KPS0_CLOPH ABC transporter related 271 6e-71 C4C847.1 C4C847_9FUSO ABC-type antimicrobial peptide transport s... 267 7e-70 C2PW25.1 C2PW25_BACCE ABC transporter, ATP-binding protein 263 1e-68 C3A600.1 C3A600_BACMY ABC transporter, ATP-binding protein 263 1e-68 >C2W881.1 C2W881_BACCE ABC transporter, ATP-binding protein Length = 255 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 134/229 (58%), Positives = 170/229 (74%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 ILE L+K Y G++ VL++I L+I+ GEFV+VMGPSGSGKSTLLYTVSGMD +T+ Sbjct: 4 ILEVERLNKFYSLGKTAKHHVLKDINLRIEMGEFVSVMGPSGSGKSTLLYTVSGMDKMTS 63 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 GSV +RL +MGF+FQ+ L++NLNI DNI+L AY +R+ I Sbjct: 64 GSVKLAGKEIADLSEEELTKLRLYKMGFVFQKSTLMRNLNIFDNIILSAYLGKTGNRQKI 123 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 NK A+ELM+ TGI+ L++R+ITQVSGGQ+QR +ICRALIN P ++FGDEPTGALNSQA Sbjct: 124 NKRASELMKRTGIADLSDRDITQVSGGQLQRVSICRALINNPDIIFGDEPTGALNSQATN 183 Query: 189 EIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 E+M IL+ INQSGTT LL THD +VAAK RVL+MLDG ++ E+ LGKY Sbjct: 184 EVMDILSNINQSGTTTLLVTHDVKVAAKTGRVLFMLDGRISCEKNLGKY 232 >A9KPS0.1 A9KPS0_CLOPH ABC transporter related Length = 255 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 133/229 (58%), Positives = 166/229 (72%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 ILEA L+K+Y N Q +L+++ L+I+QGEF++VMGPSGSGKSTLLY +SGMD +T+ Sbjct: 4 ILEAKKLNKIYTIDSDNIQHILKDVDLEIRQGEFISVMGPSGSGKSTLLYNLSGMDKMTS 63 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 GSV F +RL +MGFIFQQ LLKNL I DNI+L AY A S + I Sbjct: 64 GSVKFCGNEISTMTEEELSKLRLTKMGFIFQQSSLLKNLCILDNIILSAYLAKDESLQKI 123 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 N A +LM TGI LA +ITQ SGGQ+QRAAICR+LIN P ++FGDEPTGALNS+A Sbjct: 124 NTRALQLMERTGIKELAGNDITQASGGQLQRAAICRSLINNPQIVFGDEPTGALNSKATG 183 Query: 189 EIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 E+M ILA+IN GTTILL THD +VAAK ERVL+M+DG + S++ +GKY Sbjct: 184 EVMDILADINNEGTTILLVTHDAKVAAKTERVLFMIDGKIVSKKIIGKY 232 >C4C847.1 C4C847_9FUSO ABC-type antimicrobial peptide transport system, ATPase component Length = 265 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 126/230 (54%), Positives = 166/230 (72%) Query: 8 VILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPIT 67 ILE + K Y ++ Q VL+NI ++I++GEFV+VMGPSGSGKSTLLY +SGMD IT Sbjct: 16 TILETKDIKKTYVFDKNIKQDVLKNINIKIKKGEFVSVMGPSGSGKSTLLYNISGMDRIT 75 Query: 68 TGSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRS 127 +G++ F +RL ++GFIFQ ++ LKN+NI DNI PAY A + SR+ Sbjct: 76 SGNLIFEGNEISGFSENEFSKLRLEKIGFIFQHINFLKNMNIYDNIAFPAYVAKKQSRKE 135 Query: 128 INKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAA 187 INK ELM+ TGI LAE++IT+VSGGQ+QRA ICRALIN P +LFGDEPTGALNS+ A Sbjct: 136 INKKTEELMKKTGIFELAEKDITEVSGGQLQRAGICRALINNPCILFGDEPTGALNSKYA 195 Query: 188 TEIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 ++M I+ IN+ GTT+LL THD +VA ++ER+L+M DG++ E LGKY Sbjct: 196 NDVMDIICGINKEGTTVLLVTHDIKVALRSERILFMKDGSITGEYHLGKY 245 >C2PW25.1 C2PW25_BACCE ABC transporter, ATP-binding protein Length = 256 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/229 (56%), Positives = 166/229 (72%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 ILE L+K Y + +L+NI L+I +GEF++VMGPSGSGKSTLLY +SGMD +++ Sbjct: 7 ILEVKQLNKKYAMDGNKTYHMLKNINLEIYEGEFISVMGPSGSGKSTLLYNISGMDQMSS 66 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 GSV +RL+EMGFIFQQ +LL+NLN+ DNI+LPAY A SR+ I Sbjct: 67 GSVKVDSKEITCMKEEVLAKLRLSEMGFIFQQSNLLRNLNLFDNIVLPAYLAKFESRKII 126 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 NK A ELM+ GIS +A NIT+ SGG++QR +ICRALIN+P ++F DEPTGALN +A Sbjct: 127 NKRALELMKKMGISQIATNNITEASGGELQRVSICRALINKPNIIFADEPTGALNLKATE 186 Query: 189 EIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 E+MGILA IN+ GTTILL THD +VAAK ERVL+M+DG + SE +GKY Sbjct: 187 EVMGILANINRMGTTILLVTHDVKVAAKTERVLFMVDGEIVSEIQMGKY 235 >C3A600.1 C3A600_BACMY ABC transporter, ATP-binding protein Length = 256 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 130/229 (56%), Positives = 166/229 (72%) Query: 9 ILEASGLHKVYDNGQSNPQPVLRNIKLQIQQGEFVAVMGPSGSGKSTLLYTVSGMDPITT 68 ILE L+K Y + +L+NI L+I +GEF++VMGPSGSGKSTLLY +SGMD +++ Sbjct: 7 ILEVKQLNKKYAMDGNKTCHMLKNINLEIYEGEFISVMGPSGSGKSTLLYNISGMDQMSS 66 Query: 69 GSVAFXXXXXXXXXXXXXXXIRLNEMGFIFQQMHLLKNLNIRDNILLPAYRAGQISRRSI 128 GSV +RL+EMGFIFQQ +LL+NLN+ DNI+LPAY A SR+ I Sbjct: 67 GSVKVDSKEITCMKEEVLAKLRLSEMGFIFQQSNLLRNLNLFDNIVLPAYLAKVESRKII 126 Query: 129 NKSAAELMRLTGISALAERNITQVSGGQMQRAAICRALINEPVMLFGDEPTGALNSQAAT 188 NK A ELM+ TGIS +A NIT+ SGG++QR +ICRALIN+P ++F DEPTGALN +A Sbjct: 127 NKRALELMKKTGISQIATNNITEASGGELQRVSICRALINKPNIIFADEPTGALNLKATE 186 Query: 189 EIMGILAEINQSGTTILLATHDPRVAAKAERVLYMLDGNMASEQWLGKY 237 E+M ILA IN+ GTTILL THD +VAAK ERVL+M+DG + SE +GKY Sbjct: 187 EVMDILANINRMGTTILLVTHDVKVAAKTERVLFMVDGEIVSEIQMGKY 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,195,553,490 Number of extensions: 40214315 Number of successful extensions: 447957 Number of sequences better than 1.0e-05: 76919 Number of HSP's gapped: 363703 Number of HSP's successfully gapped: 81505 Length of query: 260 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 127 Effective length of database: 1,807,701,208 Effective search space: 229578053416 Effective search space used: 229578053416 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)