BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0335.0003.p
         (165 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I217.1 B8I217_CLOCE Putative uncharacterized protein                143   5e-33
C0Z5H6.1 C0Z5H6_BREBN Putative uncharacterized protein                 84   5e-15

>B8I217.1 B8I217_CLOCE Putative uncharacterized protein
          Length = 116

 Score =  143 bits (360), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 92/118 (77%), Gaps = 4/118 (3%)

Query: 43  MITYDDELLETCRKLLKRSAWRIQYKTRIQLIRESSPLYDNQLYDSGSDSSFETMVISEL 102
           M T DD  +E CRKLL+R+AWRIQYK R+Q  +E   +++NQ Y+ G    FE  ++S+L
Sbjct: 1   MYTNDDISVENCRKLLRRAAWRIQYKARVQQAKECQIIFENQAYNCG----FEAEIMSKL 56

Query: 103 FVDELLETIPWEKCRYIIKKTVIEGMAEHEVARELHMTQQGVSKWKRKGLEILKEYLI 160
           +V ELL+TIPWEKCR+I++KT+I  M E EVA ELHMTQQGV+KWK+KGLE+L++ L+
Sbjct: 57  YVKELLDTIPWEKCRFILEKTIIYEMTEKEVAIELHMTQQGVNKWKKKGLELLRKNLM 114


>C0Z5H6.1 C0Z5H6_BREBN Putative uncharacterized protein
          Length = 135

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 47  DDELLETCRKLLKRSAWRIQYKTRIQLIRESSPLYDNQLYDSGSDSSFETMVISELFVDE 106
           D++L E CRK+LKR AWR+QY  + +L RE+      +  ++  D+      +S+L+V E
Sbjct: 26  DEQLKEHCRKVLKRIAWRLQYAAKKRLCRETVIKEGMRGTETIEDN------LSDLYVQE 79

Query: 107 LLETIPWEKCRYIIKKTVIEGMAEHEVARELHMTQQGVSKWKRKGLEILKEYLIISS 163
           +L  +P EK R IIK  VI+GM E +VA++L+MT+QGVSK K K L  L E L  S+
Sbjct: 80  VLMQLP-EKARIIIKHVVIQGMTEEQVAQKLNMTRQGVSKCKNKYLRQLAEKLTRSA 135


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 972,481,783
Number of extensions: 36690993
Number of successful extensions: 86429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 86430
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 40
Effective length of database: 1,883,069,328
Effective search space: 75322773120
Effective search space used: 75322773120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)