BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0335.0002.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7XZ13.1 B7XZ13_RUMHA Putative uncharacterized protein                 59   2e-07
C0FHU1.1 C0FHU1_9CLOT Putative uncharacterized protein                 59   2e-07
A6TNB3.1 A6TNB3_ALKMQ Putative uncharacterized protein                 56   1e-06
A6TNB5.1 A6TNB5_ALKMQ Putative uncharacterized protein                 54   4e-06

>B7XZ13.1 B7XZ13_RUMHA Putative uncharacterized protein
          Length = 175

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 8   EIINTILTVLVIPLLGLMAKAMVSYTRREIAHLEEKIGAEAVNTLLNRAGDAIESAVIAV 67
           +IIN    +L + L+      +V+  +R+ A +E+ +  E     +N A DA+  AV   
Sbjct: 7   QIINAATPILCL-LITAGGAYLVALLKRQTAQIEKDLDNETAAKYMNMAVDAVAQAVAYT 65

Query: 68  NQTFVEELKQQGSFDAAAMEKAFKLAKEKAMTLLGETAKTELSLVLGDLEAWIETKIEVY 127
            QTF + LK +G F      +AF+ +K K + +LG+T    L  + GD +AW+ETKIE  
Sbjct: 66  AQTFTDSLKAEGKFTKEKQLEAFEKSKNKTLEILGDTTVAALREIYGDFDAWLETKIEQV 125

Query: 128 VNRNK 132
               K
Sbjct: 126 CRETK 130


>C0FHU1.1 C0FHU1_9CLOT Putative uncharacterized protein
          Length = 175

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 20  PLLGLMAKA----MVSYTRREIAHLEEKIGAEAVNTLLNRAGDAIESAVIAVNQTFVEEL 75
           P+L L+  A    +V+  +R+ A +E+ +  E     +N A DA+  AV    QTF + L
Sbjct: 14  PILCLLITAGGAYLVALLKRQTAQIEKDLDNETATKYMNMAVDAVAQAVAYTAQTFADSL 73

Query: 76  KQQGSFDAAAMEKAFKLAKEKAMTLLGETAKTELSLVLGDLEAWIETKIEVYVNRNK 132
           K +G F      +AF+ +K K + +LG+T    L  + GD +AW+ETKIE      K
Sbjct: 74  KAEGKFTKEKQLEAFEKSKNKTLEILGDTTVAALREIYGDFDAWLETKIEQVCRETK 130


>A6TNB3.1 A6TNB3_ALKMQ Putative uncharacterized protein
          Length = 130

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 7/125 (5%)

Query: 4   YFTPEIINTILTVLVIPLLGLMAKAMVSYTRREIAHLEEKIGAEAVNTLLNRAGDAIESA 63
           Y T  I+  + +VL + + G+  K + +  R   +H   K G   V+ ++++  D I+ +
Sbjct: 6   YITSTIV-LMGSVLALAIFGI--KLLSALGRH--SHCLNKQGK--VDEIMSQLDDTIKLS 58

Query: 64  VIAVNQTFVEELKQQGSFDAAAMEKAFKLAKEKAMTLLGETAKTELSLVLGDLEAWIETK 123
           VI +N + VE LKQ  SF     E+AF  AK + M ++ E     L   + +++ WI  +
Sbjct: 59  VIMINNSMVERLKQSNSFYQQDREEAFYEAKNRIMHMVNEQDVQYLHPYIDNIDEWINNR 118

Query: 124 IEVYV 128
           IE YV
Sbjct: 119 IEYYV 123


>A6TNB5.1 A6TNB5_ALKMQ Putative uncharacterized protein
          Length = 150

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 1/123 (0%)

Query: 8   EIINTILTVLVIPLLGLMAKAMVSYTRREIAHLEEKIGAEAVNTLLNRAGDAIESAVIAV 67
           +++++I+  L+IPL+ ++   +VS   +    L  ++ ++ +      A  AI++A+  V
Sbjct: 9   DLVSSIIRGLIIPLIPVITGYLVSLINKLTEELNSQLDSQELLQYTEVAETAIQTAISTV 68

Query: 68  NQTFVEELKQQGSF-DAAAMEKAFKLAKEKAMTLLGETAKTELSLVLGDLEAWIETKIEV 126
            QT+++++ +   F     ++ AF + KEK+  ++  T   EL     +L+ W+E KI  
Sbjct: 69  YQTYIDDIMKSSRFLTDDEVQIAFNMIKEKSKNIISSTIVHELEKKYQNLDNWLENKISY 128

Query: 127 YVN 129
           Y+N
Sbjct: 129 YLN 131


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 668,540,617
Number of extensions: 21158216
Number of successful extensions: 84143
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 84141
Number of HSP's successfully gapped: 6
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)