BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0010.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3AFX0.1 Q3AFX0_CARHZ DNA-binding response regulator 171 5e-41 A5D5Z5.1 A5D5Z5_PELTS Response regulator 170 1e-40 Q2BDN1.1 Q2BDN1_9BACI Two component transcriptional regulator, w... 167 8e-40 A6TP24.1 A6TP24_ALKMQ Two component transcriptional regulator, w... 165 3e-39 B0MI02.1 B0MI02_9FIRM Putative uncharacterized protein 163 1e-38 >Q3AFX0.1 Q3AFX0_CARHZ DNA-binding response regulator Length = 234 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/182 (47%), Positives = 118/182 (64%), Gaps = 1/182 (0%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 DLI+L+L +PG DG + ++R D PVL S + +D +I L GAD++I KP+S Sbjct: 47 DLILLDLMLPGIDGFEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPS 106 Query: 88 VLLARIRAHLRRYKR-AFPVNQRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVVL 146 L+AR++AH+ RY+R + L+ +PGL ID V A +EV+L+ KEF LL+ L Sbjct: 107 ELVARVKAHIGRYERLTGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFL 166 Query: 147 AKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYKF 206 AKNPNRVF E L++ IW GD+ TV VHI LR+KIEK PS P YI T+ GVGY+F Sbjct: 167 AKNPNRVFTKEELFERIWGMDSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226 Query: 207 NG 208 +G Sbjct: 227 SG 228 >A5D5Z5.1 A5D5Z5_PELTS Response regulator Length = 233 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/203 (45%), Positives = 124/203 (61%), Gaps = 5/203 (2%) Query: 8 ILTADKHWSASFILTIXXXXDLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYL 67 I TAD + +F L DLIIL++ +PG DG+ C +LR ++ PV++ S + D Sbjct: 31 ITTADAY--GAFDLIARLKPDLIILDILLPGLDGIEFCRKLRMKNEVPVIFLSAKGDSSD 88 Query: 68 RIEALNRGADEFIAKPYSFEVLLARIRAHLRRYK---RAFPVNQRHLILYPGLQIDPTTH 124 I L G D++I KP+ L+AR++A LRR K + ++ Y GL+ID H Sbjct: 89 IILGLGVGGDDYIVKPFVPGELVARVKARLRRLKPGEETAAGREPKMLKYRGLEIDLEGH 148 Query: 125 SVIAYGREVSLSSKEFRLLVVLAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQ 184 +V+ G V+L+ KEF +L +LAKNPNRVF E L DLIW D RT+MVHI LR+ Sbjct: 149 AVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQLLDLIWQSKDFADNRTLMVHISRLRK 208 Query: 185 KIEKTPSEPLYIHTVRGVGYKFN 207 KIEK P+ P YI TVRGVGYKF+ Sbjct: 209 KIEKDPNNPAYIQTVRGVGYKFS 231 >Q2BDN1.1 Q2BDN1_9BACI Two component transcriptional regulator, winged helix family protein Length = 234 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 119/187 (63%), Gaps = 6/187 (3%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 DLIIL++++P DG +C +R + P+L+ S + DD +I G D++I KP+S Sbjct: 49 DLIILDVALPDMDGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPP 108 Query: 88 VLLARIRAHLRRYKR-----AFPVNQRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRL 142 VL+A++++H+RRYK N R LI + L ID V G+ +SL++KEF+L Sbjct: 109 VLVAKVKSHIRRYKELSGSPKAASNGRALI-FGELAIDRDCCEVTREGKPISLAAKEFQL 167 Query: 143 LVVLAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGV 202 L LA+N RVF E L+D IW GDIRTVMVHI NLR+KIE+ P+ P YI TVRG+ Sbjct: 168 LCCLAENAGRVFSAEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGM 227 Query: 203 GYKFNGS 209 GYKFNG Sbjct: 228 GYKFNGG 234 >A6TP24.1 A6TP24_ALKMQ Two component transcriptional regulator, winged helix family Length = 234 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 124/206 (60%), Gaps = 6/206 (2%) Query: 8 ILTADKHWSASFILTIXXXXDLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYL 67 IL D H + + DL+IL++ +PG DG+ +C LRK P+++ S ++ Sbjct: 31 ILAMDGHQALECAFSFNP--DLVILDMMIPGLDGIEVCQALRKNLSTPIIFLSCKSTPSD 88 Query: 68 RIEALNRGADEFIAKPYSFEVLLARIRAHLRRYK----RAFPVNQRHLILYPGLQIDPTT 123 + L G D++++KP+ LLARI+AHLRR + + Q + Y L I+ Sbjct: 89 KSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRILENSNYSNAQNKRLCYGDLTINLDN 148 Query: 124 HSVIAYGREVSLSSKEFRLLVVLAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLR 183 HSV+ YG+E+ LS KEF+LL +LAKNPNRVF E L++ +W GD RTVMVHI N+R Sbjct: 149 HSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQLFETLWATESFGDHRTVMVHISNIR 208 Query: 184 QKIEKTPSEPLYIHTVRGVGYKFNGS 209 +KIE+ +P I TV+GVGYKF + Sbjct: 209 KKIERDAKKPALIQTVKGVGYKFCAT 234 >B0MI02.1 B0MI02_9FIRM Putative uncharacterized protein Length = 229 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/182 (43%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Query: 28 DLIILELSMPGADGLNLCTELRKFSDKPVLYTSHQTDDYLRIEALNRGADEFIAKPYSFE 87 D+IIL++ +PG DG +C ++R+ D P+L S + +D +I L GAD++I KP+S Sbjct: 47 DMIILDIMLPGVDGFEICKQIREKKDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPS 106 Query: 88 VLLARIRAHLRRYKRAFPVN--QRHLILYPGLQIDPTTHSVIAYGREVSLSSKEFRLLVV 145 L+AR++AHL RY+R N + ++ GL+ID T V G E + ++KEF LL Sbjct: 107 ELVARVKAHLERYRRLVSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTF 166 Query: 146 LAKNPNRVFPTETLYDLIWNDMKQGDIRTVMVHIYNLRQKIEKTPSEPLYIHTVRGVGYK 205 LA +PNRVF E L++ IW+ GDI TV VHI +R+KIE ++P YI T+ GVGY+ Sbjct: 167 LASHPNRVFTKEELFNKIWDMESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGYR 226 Query: 206 FN 207 F Sbjct: 227 FK 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,246,408,216 Number of extensions: 47893321 Number of successful extensions: 173893 Number of sequences better than 1.0e-05: 17403 Number of HSP's gapped: 153180 Number of HSP's successfully gapped: 17416 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)