BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0334.0008.p (496 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8AMU7.1 A8AMU7_CITK8 Putative uncharacterized protein 652 0.0 A6M0R1.1 A6M0R1_CLOB8 Oligogalacturonide transporter 645 0.0 A6M2D4.1 A6M2D4_CLOB8 Major facilitator superfamily MFS_1 573 e-161 B4AIV4.1 B4AIV4_BACPU Oligogalacturonide transporter 464 e-129 C2D2A8.1 C2D2A8_LACBR Oligogalacturonide transporter (Fragment) 431 e-119 >A8AMU7.1 A8AMU7_CITK8 Putative uncharacterized protein Length = 514 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/494 (62%), Positives = 378/494 (76%) Query: 3 KKKVTIPVSIGYGLTDLMGGGAFTIIGAWLMFYYTTFVGMSPXXXXXXXXXXXXXXXXXS 62 +KVTIPVSIGYGLTD+MGGGAFT+IGAWL+F+YTTFVG+SP S Sbjct: 5 NRKVTIPVSIGYGLTDIMGGGAFTVIGAWLLFFYTTFVGLSPIEAASIVAIARIVDAIVS 64 Query: 63 LFMGSITDHFYKTKLGKKFGRRRFFLLVGSPLMIVYALLWIDGMSYAFYLVCYLMFEIIA 122 LFMGS TDHFYK LGKKFGRRRFFLL+G+PLM+VY LLW++GM++ FYL YL FEIIA Sbjct: 65 LFMGSFTDHFYKHYLGKKFGRRRFFLLIGAPLMLVYILLWMNGMNFWFYLAVYLAFEIIA 124 Query: 123 ALVLIPWETLPSEMTKDFTERTKLSTCRMXXXXLGTFLATFVPGRLIKYFGDDTSYAYFL 182 A+VLIPWETLPSEMTKDF +RTKLSTCRM GTFLATF+PG LI + G++ + AY + Sbjct: 125 AMVLIPWETLPSEMTKDFNDRTKLSTCRMFLSASGTFLATFIPGLLIGWLGENNADAYLI 184 Query: 183 NGLIFAVLFAVCIFITYKVTWERELTPAMLEELEKGQTRQSFADRILALRNMLKDYASTF 242 NG++FAVLF VC+FI++KVTWERELTP ML E+EK + + +++ A N+ K+YAST Sbjct: 185 NGVVFAVLFTVCVFISWKVTWERELTPEMLAEMEKERQPMTAGEKLSAFGNLFKEYASTL 244 Query: 243 KIRAFRKHLAIYLLSFTAKDIFNTVFVFFCVYCXXXXXXXXXXXXXXXXXGLPITLLAGF 302 K+RAFRKHLAIYL SFTAKD++NTVFVFFCVYC GLP+TL AG Sbjct: 245 KVRAFRKHLAIYLFSFTAKDVYNTVFVFFCVYCLNVSSSLAGTLLSMSIVGLPVTLAAGV 304 Query: 303 AIIKFGPSRLYTVSYSSMILCLAGFYMIYLYDPSSKIAIMYVLAVVYQMGRSLLEFTPWN 362 AIIK+GPSRLY SYS M+LCL GF+++Y + +KI ++ +LA VYQ+GR +LEFTPWN Sbjct: 305 AIIKYGPSRLYVFSYSLMMLCLGGFFLVYQFPTDNKIVLLVILAGVYQVGRCILEFTPWN 364 Query: 363 VFPFIPDVDEAVTQKRREGLFAAVMTFGRKTTVALATFIVGIVLEEGGFVKGQQYQSPEA 422 VFPFIPD+DE +T++RREGLFAAVMTF RKTTVA+ATF VG++L+ GGFVKG Q Q EA Sbjct: 365 VFPFIPDIDEMITRQRREGLFAAVMTFSRKTTVAIATFAVGLLLQSGGFVKGSQTQPQEA 424 Query: 423 ISVIANTLMFGASALLVLALIFAWTFKLNKKTHGVLVKEVDRLKLNGSKSQVDPETQKIV 482 I+ IA L G + LL++AL A TF LNK+TH + V E++RLK +G K V PE + IV Sbjct: 425 ITTIAMLLFVGTAGLLIIALWQALTFHLNKRTHKIFVDEIERLKADGLKQDVTPEARHIV 484 Query: 483 EDLTGYKYEKIWNQ 496 EDLTGY Y+ +W Q Sbjct: 485 EDLTGYSYDSLWCQ 498 >A6M0R1.1 A6M0R1_CLOB8 Oligogalacturonide transporter Length = 501 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 300/495 (60%), Positives = 381/495 (76%) Query: 2 GKKKVTIPVSIGYGLTDLMGGGAFTIIGAWLMFYYTTFVGMSPXXXXXXXXXXXXXXXXX 61 +K+TI +GYGL DLMGGGAFTIIGA+L+F+YTTF G++P Sbjct: 4 NNRKITIARGVGYGLVDLMGGGAFTIIGAFLLFFYTTFAGLTPIEGASIIAIARIVDAVA 63 Query: 62 SLFMGSITDHFYKTKLGKKFGRRRFFLLVGSPLMIVYALLWIDGMSYAFYLVCYLMFEII 121 SLF+GSI+D+FYKTKLGK FGRRRFFLL+G+PLM Y LLW+ G SYAFYLV YL+FEII Sbjct: 64 SLFIGSISDNFYKTKLGKLFGRRRFFLLIGAPLMADYVLLWVTGRSYAFYLVTYLLFEII 123 Query: 122 AALVLIPWETLPSEMTKDFTERTKLSTCRMXXXXLGTFLATFVPGRLIKYFGDDTSYAYF 181 AA+VLIPWETLP+EMTKDFT+RTKLS RM GTFLATFVPGRLI +FGD + AYF Sbjct: 124 AAMVLIPWETLPAEMTKDFTDRTKLSASRMFISATGTFLATFVPGRLIAFFGDKSPQAYF 183 Query: 182 LNGLIFAVLFAVCIFITYKVTWERELTPAMLEELEKGQTRQSFADRILALRNMLKDYAST 241 +NGL+FA+++A+CI I++KVTWER+LTP M +EL G T +SF ++++ + + DY ST Sbjct: 184 INGLVFAIIYAICILISHKVTWERDLTPEMEQELLNGSTSKSFGEQLMTIVKVAGDYVST 243 Query: 242 FKIRAFRKHLAIYLLSFTAKDIFNTVFVFFCVYCXXXXXXXXXXXXXXXXXGLPITLLAG 301 FKIRAFR+HLAIY+ SFTAKD+FN+VF++FCV+ G+P+T+L G Sbjct: 244 FKIRAFRQHLAIYICSFTAKDLFNSVFIYFCVFNLGVSSTTAANVLSLSIIGIPVTILGG 303 Query: 302 FAIIKFGPSRLYTVSYSSMILCLAGFYMIYLYDPSSKIAIMYVLAVVYQMGRSLLEFTPW 361 F +IK GP LY ++YS MI+CL FY +Y+ + S I +++V+ +YQ+GRSLLEFTPW Sbjct: 304 FLMIKVGPGNLYKMAYSIMIVCLLAFYGLYVGNLGSNIVLLFVIGTIYQVGRSLLEFTPW 363 Query: 362 NVFPFIPDVDEAVTQKRREGLFAAVMTFGRKTTVALATFIVGIVLEEGGFVKGQQYQSPE 421 NVFPFIPDVDE VT++RREGLFAAVMTF RK++VA+ATF++G+VL+E GFVKGQ QSP+ Sbjct: 364 NVFPFIPDVDEMVTRQRREGLFAAVMTFTRKSSVAIATFVIGVVLQESGFVKGQATQSPQ 423 Query: 422 AISVIANTLMFGASALLVLALIFAWTFKLNKKTHGVLVKEVDRLKLNGSKSQVDPETQKI 481 +S IA L G +LLV+ALI A TFKLNK+THG+LV EV+RLK NGSK +V PET+ I Sbjct: 424 VVSTIATLLAVGCISLLVIALICAATFKLNKRTHGILVDEVERLKNNGSKEEVTPETKTI 483 Query: 482 VEDLTGYKYEKIWNQ 496 VE+LTGYKYE +W + Sbjct: 484 VENLTGYKYENVWKE 498 >A6M2D4.1 A6M2D4_CLOB8 Major facilitator superfamily MFS_1 Length = 509 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/496 (56%), Positives = 364/496 (73%), Gaps = 7/496 (1%) Query: 4 KKVTIPVSIGYGLTDLMGGGAFTIIGAWLMFYYTTFVGMSPXXXXXXXXXXXXXXXXXSL 63 KK+T+P IGYGL D+MGGGAFTIIGA+L+F+YTT+ G++P SL Sbjct: 6 KKITLPRCIGYGLVDIMGGGAFTIIGAFLLFFYTTYCGLTPIQGASIVAVARFVDAIASL 65 Query: 64 FMGSITDHFYKTKLGKKFGRRRFFLLVGSPLMIVYALLWIDGMSYAFYLVCYLMFEIIAA 123 F+GSI+D+FYKTKLGK FGRRRFFLL+G+PLM +Y L+W GM+Y FYL CYL+FEI+AA Sbjct: 66 FIGSISDNFYKTKLGKIFGRRRFFLLIGAPLMAIYVLIWTIGMNYWFYLSCYLLFEIVAA 125 Query: 124 LVLIPWETLPSEMTKDFTERTKLSTCRMXXXXLGTFLATFVPGRLIKYFGDDTSYAYFLN 183 +VLIPWETLP+EMT ++++RTK+STCR+ LG FL TFVP +LI +FG YAYF N Sbjct: 126 MVLIPWETLPTEMTTNYSDRTKISTCRLVISSLGQFLGTFVPAQLIGHFGQKNPYAYFYN 185 Query: 184 GLIFAVLFAVCIFITYKVTWERELTPAMLEEL---EKGQTRQSFADRILALRNMLKDYAS 240 GL FA+L+A+CIFITYK TWERE+TPAM +EL + + ++F+D + +L +YAS Sbjct: 186 GLFFAILYAICIFITYKATWEREITPAMEQELLAASQSKGNRNFSDYL----KVLGEYAS 241 Query: 241 TFKIRAFRKHLAIYLLSFTAKDIFNTVFVFFCVYCXXXXXXXXXXXXXXXXXGLPITLLA 300 TFK+++FRKHL +YLLSFTA DIFN VF+FFCVY G+P T++ Sbjct: 242 TFKLKSFRKHLGLYLLSFTAGDIFNAVFLFFCVYNLKVSSSFGAYLLSFSIIGIPGTIIG 301 Query: 301 GFAIIKFGPSRLYTVSYSSMILCLAGFYMIYLYDPSSKIAIMYVLAVVYQMGRSLLEFTP 360 G +K GP++LY ++Y+ MIL + +Y +YL DP +K AI+ +++VY RSL TP Sbjct: 302 GILFLKLGPTKLYKITYTFMILSVLAYYGVYLADPEAKTAILLGISIVYFAFRSLAVLTP 361 Query: 361 WNVFPFIPDVDEAVTQKRREGLFAAVMTFGRKTTVALATFIVGIVLEEGGFVKGQQYQSP 420 W VFPFIPDVDE V+ KRREGLFAAVMTF RK+TVA+ATF++G+VL+EGGFVKGQ+ QSP Sbjct: 362 WTVFPFIPDVDEIVSMKRREGLFAAVMTFTRKSTVAIATFLIGVVLQEGGFVKGQEVQSP 421 Query: 421 EAISVIANTLMFGASALLVLALIFAWTFKLNKKTHGVLVKEVDRLKLNGSKSQVDPETQK 480 + + +I L+ G L L+LI A+TFKLNK+TH +L+ EV+RLK G K VD T++ Sbjct: 422 QTVQIIGYVLLIGCVGLFALSLILAFTFKLNKETHQILIDEVERLKNGGLKDDVDSNTKE 481 Query: 481 IVEDLTGYKYEKIWNQ 496 +VE LTGYKYE +W Q Sbjct: 482 VVESLTGYKYEDVWKQ 497 >B4AIV4.1 B4AIV4_BACPU Oligogalacturonide transporter Length = 517 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/497 (45%), Positives = 324/497 (65%), Gaps = 10/497 (2%) Query: 3 KKKVTIPVSIGYGLTDLMGGGAFTIIGAWLMFYYTTFVGMSPXXXXXXXXXXXXXXXXXS 62 +K+T+ IGYG DL GGGAF IIGAW+++++ T+ G++P S Sbjct: 5 NRKLTLKNYIGYGTMDLFGGGAFAIIGAWMLYFFITYCGLTPVEAGSIIAIARIIDAIAS 64 Query: 63 LFMGSITDHFYKTKLGKKFGRRRFFLLVGSPLMIVYALLWIDGMSYAFYLVCYLMFEIIA 122 MG ITDHF +TKLGKKFGRRRFFLLVGSPLM++Y+LLWI M+Y +YL Y++ E +A Sbjct: 65 PIMGHITDHFGRTKLGKKFGRRRFFLLVGSPLMVIYSLLWISDMNYWYYLTVYILLEFLA 124 Query: 123 ALVLIPWETLPSEMTKDFTERTKLSTCRMXXXXLGTFLATFVPGRLIKYFGDDTSYAYFL 182 A+VLIP+ETL +EMT DF RTKLST R+ LGTFLATF+PGRL + FG D+ + Sbjct: 125 AMVLIPFETLGAEMTNDFNARTKLSTIRLIYSGLGTFLATFIPGRLFEIFGKDSPQVFLY 184 Query: 183 NGLIFAVLFAVCIFITYKVTWERELTPAMLEE--LEKGQTRQSFADRILALRNMLKDYAS 240 NG+IF +F + IT++ TWER++ M+E +EK I +L+ ++ D S Sbjct: 185 NGMIFTFIFMAALLITHRTTWERKIEEDMIEPYGVEK-------VPAIESLKKIIIDLTS 237 Query: 241 TFKIRAFRKHLAIYLLSFTAKDIFNTVFVFFCVYCXXXXXXXXXXXXXX-XXXGLPITLL 299 TF+IR+FR+H+ +Y+ SFTA DI N VFV+F V+ + T+L Sbjct: 238 TFRIRSFRQHITMYICSFTAMDILNAVFVYFIVFSLNKDAVLAADLLSIGSLLQMLCTIL 297 Query: 300 AGFAIIKFGPSRLYTVSYSSMILCLAGFYMIYLYDPSSKIAIMYVLAVVYQMGRSLLEFT 359 G+ +IK GP+ +SY ++I C++G+ +Y P+ I +Y +V+ +G+S L + Sbjct: 298 FGWLVIKIGPAPSLKISYIAIITCISGYIFLYFTQPTYMIIALYAFSVILGIGKSGLYYI 357 Query: 360 PWNVFPFIPDVDEAVTQKRREGLFAAVMTFGRKTTVALATFIVGIVLEEGGFVKGQQYQS 419 PWN++ FIPDVDE VT+KRREG+FA +MTF RK+T ALATF+VG++L+E GFV QS Sbjct: 358 PWNIYTFIPDVDEMVTRKRREGIFAGIMTFTRKSTTALATFLVGVILQESGFVASATTQS 417 Query: 420 PEAISVIANTLMFGASALLVLALIFAWTFKLNKKTHGVLVKEVDRLKLNGSKSQVDPETQ 479 AI+ I L FG L+ ++L+ ++ FKL+KKTH +++ E++RLK NGS Q D ET+ Sbjct: 418 TTAINGIVGILFFGTVGLVGISLVISFKFKLSKKTHSIMINEINRLKNNGSMEQADDETR 477 Query: 480 KIVEDLTGYKYEKIWNQ 496 +++ LTG+ YE +W Sbjct: 478 SVLKALTGWDYENLWGN 494 >C2D2A8.1 C2D2A8_LACBR Oligogalacturonide transporter (Fragment) Length = 434 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/427 (48%), Positives = 288/427 (67%), Gaps = 5/427 (1%) Query: 4 KKVTIPVSIGYGLTDLMGGGAFTIIGAWLMFYYTTFVGMSPXXXXXXXXXXXXXXXXXSL 63 +K+TI IGYG+ D +GGG+ TIIGAW++F+YT++ ++ SL Sbjct: 11 RKITIWRGIGYGIVDFVGGGSMTIIGAWMLFFYTSYCNLTAVEGASIIGAARVADAICSL 70 Query: 64 FMGSITDHFYKTKLGKKFGRRRFFLLVGSPLMIVYALLWIDGMSYAFYLVCYLMFEIIAA 123 MGS+TD+FYKTKLG++FGRR FFLL+GSPLM++Y LWI GM+Y +Y Y++FE+I++ Sbjct: 71 LMGSLTDNFYKTKLGQRFGRRHFFLLIGSPLMLLYITLWIAGMNYWYYFATYMVFEVISS 130 Query: 124 LVLIPWETLPSEMTKDFTERTKLSTCRMXXXXLGTFLATFVPGRLIKYFGDDTSYAYFLN 183 ++IP+ETLP+EMT D+ +RTKLS+ RM TFLATF+PG+L G + + +N Sbjct: 131 AMMIPYETLPNEMTDDYNQRTKLSSARMFISAGATFLATFIPGQLFAILGQHSPMPFLVN 190 Query: 184 GLIFAVLFAVCIFITYKVTWERELTPAMLEELEKGQTRQ-SFADRILALRNMLKDYASTF 242 G +FA++FA+ +++ Y VTWE+ +T M +ELEK S RI L LKDY ST Sbjct: 191 GTLFAIIFAIGVYVCYAVTWEKPVTEEMKKELEKDSVNHGSVFQRIWGL---LKDYGSTL 247 Query: 243 KIRAFRKHLAIYLLSFTAKDIFNTVFVFFCVYCXXXXXXXXXXXXXXXXXGLPITLLAGF 302 +I++FRKHL IYL SFT KD FNTVF +FC+YC GL +T++AGF Sbjct: 248 RIKSFRKHLLIYLFSFTGKDTFNTVFAYFCIYCLGLSATVAANMLSLSLIGLLVTIVAGF 307 Query: 303 AIIKFGPSRLYTVSYSSMILCLAGFYMIY-LYDPSSKIAIMYVLAVVYQMGRSLLEFTPW 361 ++KFGP LY V Y M+L L G+Y+I+ L+ S I +++ +++ YQ+GR+ LEFTPW Sbjct: 308 GMVKFGPKFLYEVGYGLMLLMLVGYYLIFQLHITSHTILLLFFVSLFYQIGRATLEFTPW 367 Query: 362 NVFPFIPDVDEAVTQKRREGLFAAVMTFGRKTTVALATFIVGIVLEEGGFVKGQQYQSPE 421 NVFPFIPD+DE VT++RR G+FAAVM+F RK+TVA+AT VG VL+ GF K QS Sbjct: 368 NVFPFIPDLDEIVTKRRRAGIFAAVMSFTRKSTVAVATIAVGFVLDGSGFTKNAATQSLA 427 Query: 422 AISVIAN 428 IAN Sbjct: 428 TQHAIAN 434 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,623,952,945 Number of extensions: 97241649 Number of successful extensions: 329547 Number of sequences better than 1.0e-05: 418 Number of HSP's gapped: 329256 Number of HSP's successfully gapped: 433 Length of query: 496 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 356 Effective length of database: 1,741,754,103 Effective search space: 620064460668 Effective search space used: 620064460668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)