BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0333.0015.p
         (62 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBN8.1 B3KBN8_9BACI Putative uncharacterized protein                111   2e-23
B1DDX5.1 B1DDX5_9BACL Putative uncharacterized protein                106   9e-22
C0Z7W4.1 C0Z7W4_BREBN Putative uncharacterized protein                 80   7e-14
C1PQV5.1 C1PQV5_ALIAC Putative uncharacterized protein                 76   8e-13
B7DNS3.1 B7DNS3_9BACL Putative uncharacterized protein                 76   8e-13

>B3KBN8.1 B3KBN8_9BACI Putative uncharacterized protein
          Length = 62

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 1  MWTVIYIAPTARVADMIQSKLTEEGFLIKCRPVNMSKQQFEILVPSGELEEVQEALNLIL 60
          MWTVIYIAPTA+VA+MI+++LTEEGFL++ RPVN+SKQQFEILVPSGELEEVQE LN IL
Sbjct: 1  MWTVIYIAPTAKVAEMIKTRLTEEGFLVQSRPVNLSKQQFEILVPSGELEEVQEVLNSIL 60

Query: 61 HP 62
          HP
Sbjct: 61 HP 62


>B1DDX5.1 B1DDX5_9BACL Putative uncharacterized protein
          Length = 62

 Score =  106 bits (264), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 1  MWTVIYIAPTARVADMIQSKLTEEGFLIKCRPVNMSKQQFEILVPSGELEEVQEALNLIL 60
          MWTVIYIAPTAR+AD I+ +LTEEGFL+K RPVN+SKQQ+EILVPSGELEEVQE  N I+
Sbjct: 1  MWTVIYIAPTARIADNIKKRLTEEGFLVKVRPVNLSKQQYEILVPSGELEEVQEVFNSIM 60

Query: 61 HP 62
           P
Sbjct: 61 QP 62


>C0Z7W4.1 C0Z7W4_BREBN Putative uncharacterized protein
          Length = 60

 Score = 79.7 bits (195), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 48/61 (78%), Gaps = 1/61 (1%)

Query: 1  MWTVIYIAPTARVADMIQSKLTEEGFLIKCRPVNMSKQQFEILVPSGELEEVQEALNLIL 60
          MWTVIYIAP+AR+A+ IQ +LT+EGFL+K R   +SK Q+EILVP  EL EV++ L  IL
Sbjct: 1  MWTVIYIAPSARIAERIQQRLTDEGFLVKIREGKVSK-QYEILVPESELNEVRDVLGTIL 59

Query: 61 H 61
          H
Sbjct: 60 H 60


>C1PQV5.1 C1PQV5_ALIAC Putative uncharacterized protein
          Length = 65

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 1  MWTVIYIAPTARVADMIQSKLTEEGFLIKCRPVNMSKQQFEILVPSGELEEVQEALNLIL 60
          MWTVIYIAPT++ A+ I+ ++TEEGFL+K +    +K+Q+EIL+P  EL+E Q+ L  IL
Sbjct: 1  MWTVIYIAPTSQQAERIRLRMTEEGFLVKVKKARGAKEQYEILIPESELDEAQDVLRDIL 60

Query: 61 H 61
          H
Sbjct: 61 H 61


>B7DNS3.1 B7DNS3_9BACL Putative uncharacterized protein
          Length = 65

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 1  MWTVIYIAPTARVADMIQSKLTEEGFLIKCRPVNMSKQQFEILVPSGELEEVQEALNLIL 60
          MWTVIYIAPT++ A+ I+ ++TEEGFL+K +    +K+Q+EIL+P  EL+E Q+ L  IL
Sbjct: 1  MWTVIYIAPTSQQAERIRLRMTEEGFLVKVKKARGAKEQYEILIPESELDEAQDVLRDIL 60

Query: 61 H 61
          H
Sbjct: 61 H 61


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 332,695,402
Number of extensions: 9123502
Number of successful extensions: 20286
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 20282
Number of HSP's successfully gapped: 12
Length of query: 62
Length of database: 3,060,696,203
Length adjustment: 34
Effective length of query: 28
Effective length of database: 2,740,381,693
Effective search space: 76730687404
Effective search space used: 76730687404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)