BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0333.0011.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC97.1 B3KC97_9BACI Putative uncharacterized protein 265 2e-69 B7DQ08.1 B7DQ08_9BACL Putative uncharacterized protein 221 6e-56 C1PVR3.1 C1PVR3_ALIAC Putative uncharacterized protein 219 2e-55 B7DQM6.1 B7DQM6_9BACL Putative uncharacterized protein 215 3e-54 C1PRI4.1 C1PRI4_ALIAC Putative uncharacterized protein 185 4e-45 >B3KC97.1 B3KC97_9BACI Putative uncharacterized protein Length = 228 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 120/204 (58%), Positives = 152/204 (74%) Query: 28 FGWTSGNWSGYAISGKKGAFQRITGEWIVPLVKPTSNPTYSSAWIGIDGFKNSSLIQTGT 87 GW S NWSGY+I+GKKGAF+R++ +W VP V+P+ +YSSAWIGIDGF NS LIQTGT Sbjct: 25 IGWISSNWSGYSITGKKGAFKRVSAKWNVPFVRPSRGASYSSAWIGIDGFSNSKLIQTGT 84 Query: 88 GHESTKGVVHYYAWWEILPAAETVIPLPVSPGDHMKASIVKLGSGKWSITLSNLSKSWTF 147 GH+ G +YYAWWEILPA+ T+IPLP+ PGD M ASI+K W I L N+S++WTF Sbjct: 85 GHDWIDGKAYYYAWWEILPASVTIIPLPIQPGDRMHASIIKCSGSNWLICLRNVSRNWTF 144 Query: 148 RTFQRYTGPQTSAEWIMEAPQVGGTIGKLAQVSATRFFRCRVNGRSPKLTPADGGIMVQK 207 RT QRY GPQTSAEWI+EAPQ+ G + +A++S F CRVNG+ KLT DGGIM+Q Sbjct: 145 RTLQRYGGPQTSAEWIVEAPQINGELATMARLSPVVFSCCRVNGKRSKLTAEDGGIMLQN 204 Query: 208 KITVSVPGSPNASGDAFIVKRVYR 231 S+P +PN +GD F+VK V++ Sbjct: 205 STVTSIPSNPNRAGDGFVVKGVHQ 228 >B7DQ08.1 B7DQ08_9BACL Putative uncharacterized protein Length = 271 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 111/213 (52%), Positives = 141/213 (66%), Gaps = 5/213 (2%) Query: 24 QSTGFGWTSGNWSGYAISGKKGAFQRITGEWIVPLVKPTSNPTYSSAWIGIDGFKNSSLI 83 Q++ FGW++ NWSGYA++G + ITG W+VP V P+ TYSS+WIGIDGF NS LI Sbjct: 58 QASSFGWSASNWSGYAVTGST--YNDITGNWVVPAVSPSKQSTYSSSWIGIDGFNNSDLI 115 Query: 84 QTGTGHESTKGVVHYYAWWEILPAAETVI-PLPVSPGDHMKASIVKLGSGKWSITLSNLS 142 QTGT + G Y AWWEILPA ETVI + ++PGDHM A I G+G W+ITL++++ Sbjct: 116 QTGTEQDYVNGHARYDAWWEILPAPETVITSMTIAPGDHMSAHIHNNGNGTWTITLTDVT 175 Query: 143 KSWTFRTFQRYTGPQTSAEWIMEAPQVGGTIGKLAQVSATRFFRCRVNGRSPKLTPADGG 202 ++ TF T Q Y+GP TSAEWI EAPQ+GG I LA T F VNG +P LT +DGG Sbjct: 176 RNETFSTTQSYSGPATSAEWIQEAPQIGGRIAPLADYGETTFDPGTVNGGNPGLTMSDGG 235 Query: 203 IMVQKKITVSVPGSPNASGDAFIVKRVYRKGKP 235 MVQ VSVP +P++ D F V Y +P Sbjct: 236 YMVQNNAVVSVPSAPDSDTDGFNV--AYGSNQP 266 >C1PVR3.1 C1PVR3_ALIAC Putative uncharacterized protein Length = 271 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/213 (52%), Positives = 140/213 (65%), Gaps = 5/213 (2%) Query: 24 QSTGFGWTSGNWSGYAISGKKGAFQRITGEWIVPLVKPTSNPTYSSAWIGIDGFKNSSLI 83 Q++ FGW++ NWSGYAI+G + ITG WIVP V P+ TYSS+WIGIDGF NS LI Sbjct: 58 QASSFGWSASNWSGYAITGST--YNDITGSWIVPAVSPSKRNTYSSSWIGIDGFNNSDLI 115 Query: 84 QTGTGHESTKGVVHYYAWWEILPAAETVIP-LPVSPGDHMKASIVKLGSGKWSITLSNLS 142 QTGT + G Y AWWEILPA ETVI + ++PGDHM A I G+G W+ITL++++ Sbjct: 116 QTGTEQDYVNGHAQYDAWWEILPAPETVISSMTIAPGDHMSAHIHNNGNGTWTITLTDVT 175 Query: 143 KSWTFRTFQRYTGPQTSAEWIMEAPQVGGTIGKLAQVSATRFFRCRVNGRSPKLTPADGG 202 ++ TF T Q YTGP +SAEWI EAPQ+GG I LA T F VNG +P LT +D G Sbjct: 176 RNETFSTTQSYTGPGSSAEWIQEAPQIGGRIATLANYGETTFDPGTVNGGNPGLTMSDAG 235 Query: 203 IMVQKKITVSVPGSPNASGDAFIVKRVYRKGKP 235 MVQ VSVP +P++ D F V Y +P Sbjct: 236 YMVQNNAVVSVPSAPDSDTDGFNV--AYGSNQP 266 >B7DQM6.1 B7DQM6_9BACL Putative uncharacterized protein Length = 277 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/203 (52%), Positives = 134/203 (66%), Gaps = 3/203 (1%) Query: 26 TGFGWTSGNWSGYAISGKKGAFQRITGEWIVPLVKPTSNPTYSSAWIGIDGFKNSSLIQT 85 + GW + NWSGYAI+G + ITG WIVP V P++ TYSS+WIGIDGF NS LIQT Sbjct: 66 SNLGWAASNWSGYAITGST--YNDITGNWIVPAVSPSNKNTYSSSWIGIDGFNNSDLIQT 123 Query: 86 GTGHESTKGVVHYYAWWEILPAAETVIP-LPVSPGDHMKASIVKLGSGKWSITLSNLSKS 144 GT + G Y AWWEILPA ETVI + ++PGDHM A I G+G W+ITL++++++ Sbjct: 124 GTEQDYVNGHAQYDAWWEILPAPETVISSMTIAPGDHMYAHIHNNGNGTWTITLTDVTRN 183 Query: 145 WTFRTFQRYTGPQTSAEWIMEAPQVGGTIGKLAQVSATRFFRCRVNGRSPKLTPADGGIM 204 TF T Q Y+GP +SAEWI EAP+V G I LA T F VNG +P L P+DGG M Sbjct: 184 ETFTTTQSYSGPASSAEWIQEAPEVNGHIAPLANYGETTFDPGTVNGGNPNLVPSDGGYM 243 Query: 205 VQKKITVSVPGSPNASGDAFIVK 227 VQ VSVP +P++ D F V Sbjct: 244 VQNNSVVSVPSNPDSDTDGFNVS 266 >C1PRI4.1 C1PRI4_ALIAC Putative uncharacterized protein Length = 238 Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/213 (44%), Positives = 124/213 (58%), Gaps = 5/213 (2%) Query: 20 SGKAQSTGFGWTSGNWSGYAISGKKGAFQRITGEWIVPLVKPTSNPTYSSAWIGIDGFKN 79 G + GW + NWSGYA++G G + I+G W+VP V P+ +YSS WIGIDGF N Sbjct: 2 DGALSVSDLGWATLNWSGYALTG--GHYWDISGNWVVPAVSPSRGNSYSSTWIGIDGFSN 59 Query: 80 SSLIQTGTGHESTKGVVHYYAWWEILPAAETVIPLP---VSPGDHMKASIVKLGSGKWSI 136 LIQ GT G Y+AWWEI P T I +P V+PGD M+A I + G G+W++ Sbjct: 60 DDLIQIGTEQNYVDGRPQYFAWWEIRPVHPTEIVIPSMAVAPGDAMEAHIHRDGHGRWTL 119 Query: 137 TLSNLSKSWTFRTFQRYTGPQTSAEWIMEAPQVGGTIGKLAQVSATRFFRCRVNGRSPKL 196 TL +L+++ F Q YTGP SAEWI EAP++ G + LA F VNG P+L Sbjct: 120 TLDDLTENEQFTITQSYTGPGASAEWIQEAPEIRGHVCTLADYGTLTFVPGTVNGHPPRL 179 Query: 197 TPADGGIMVQKKITVSVPGSPNASGDAFIVKRV 229 TP+DGG M+ + +SVP PN F V + Sbjct: 180 TPSDGGYMMDDNLILSVPSGPNPETGGFDVFYI 212 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,654,614,380 Number of extensions: 71177291 Number of successful extensions: 148949 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 148910 Number of HSP's successfully gapped: 66 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)