BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0333.0009.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBP2.1 B3KBP2_9BACI Thioesterase superfamily protein 164 4e-39 B1DDX1.1 B1DDX1_9BACL Thioesterase superfamily protein 154 4e-36 C0Z7X0.1 C0Z7X0_BREBN Putative uncharacterized protein yneP 137 3e-31 B2A6D6.1 B2A6D6_NATTJ Thioesterase superfamily protein 127 3e-28 C0GHD4.1 C0GHD4_9FIRM Thioesterase superfamily protein 119 7e-26 >B3KBP2.1 B3KBP2_9BACI Thioesterase superfamily protein Length = 143 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/144 (54%), Positives = 99/144 (68%), Gaps = 6/144 (4%) Query: 27 MGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFKSPARYDDLVAVY 86 MGVVYHANYL+WFE GRTEM RE+GF YR +E GVLLPV D++++ PARYDDLV ++ Sbjct: 1 MGVVYHANYLNWFEIGRTEMIREMGFTYRGMEEEGVLLPVVDLDIKYRRPARYDDLVTIF 60 Query: 87 ARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGELLVTGSTSHVWL 146 R+T FS LR+ YEYE+R L+ E D A G S +LPG LL G+T HVWL Sbjct: 61 TRMTAFSPLRIHYEYEVRLLSEQEQADLGARGWHTES------ELPGVLLTAGATRHVWL 114 Query: 147 NTDWKPVRLDRVLPELFLAITMAL 170 N +WKP RLD+ P+L+ A+ L Sbjct: 115 NREWKPARLDKCAPKLYDALKDTL 138 >B1DDX1.1 B1DDX1_9BACL Thioesterase superfamily protein Length = 155 Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/155 (46%), Positives = 100/155 (64%), Gaps = 9/155 (5%) Query: 9 TSRWHGTTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTT 68 + +W RVRYQETDQMGVV+H NY++WFE GRTE+ R G+ Y+++E G+LLPV Sbjct: 3 SQQWFLHPLRVRYQETDQMGVVFHGNYITWFEIGRTELIRSAGYDYKTIEQQGLLLPVVD 62 Query: 69 ADLQFKSPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADV 128 +++ PARYDD V + R++ FS++R+ +E EIR+++ E P Sbjct: 63 LQCRYELPARYDDTVLICTRISDFSSVRLSFESEIRKVS-LEQFHPAVVN--------QY 113 Query: 129 EQLPGELLVTGSTSHVWLNTDWKPVRLDRVLPELF 163 E LPGE LV G T HVW+N W+P RLD+ LPEL+ Sbjct: 114 EDLPGERLVAGGTKHVWVNEKWRPARLDKGLPELY 148 >C0Z7X0.1 C0Z7X0_BREBN Putative uncharacterized protein yneP Length = 143 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/156 (45%), Positives = 89/156 (57%), Gaps = 24/156 (15%) Query: 8 LTSRWHGTTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVT 67 +T H RVRY ETDQMGVVYH NYL+WFE GRTE+ R G YR LE GVLLPVT Sbjct: 1 MTPFIHSHRLRVRYGETDQMGVVYHTNYLNWFEVGRTELIRHAGITYRELEEKGVLLPVT 60 Query: 68 TADLQFKSPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPAD 127 A++ +K PARYDD V + R+ S +R+ + YEI RL Sbjct: 61 DANISYKQPARYDDEVEIRTRVKEISPVRLTFAYEIVRLPDQ------------------ 102 Query: 128 VEQLPGELLVTGSTSHVWLNTDWKPVRLDRVLPELF 163 +LLV G T HV+ NT KP+RL R +P+++ Sbjct: 103 ------QLLVLGETMHVFTNTALKPIRLSRAVPDIY 132 >B2A6D6.1 B2A6D6_NATTJ Thioesterase superfamily protein Length = 146 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 85/149 (57%), Gaps = 16/149 (10%) Query: 15 TTFRVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADLQFK 74 T RVRYQETDQMGVVY+ANYL WFE GR FREL F YR +E G+ +PV +A+ ++ Sbjct: 5 TNIRVRYQETDQMGVVYYANYLVWFEVGRNHYFRELDFPYRDMEKAGIYIPVISANCNYQ 64 Query: 75 SPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQLPGE 134 PARYDDL+ + ++T ++ ++ + YEI R GT+ G Sbjct: 65 KPARYDDLIEIQTKITKMTSAKIWFNYEIIR--GTQDTTTSGKG--------------DR 108 Query: 135 LLVTGSTSHVWLNTDWKPVRLDRVLPELF 163 L G TSH ++N KPV + P+L+ Sbjct: 109 FLAKGETSHAFVNETGKPVAFKKYFPDLY 137 >C0GHD4.1 C0GHD4_9FIRM Thioesterase superfamily protein Length = 142 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 84/151 (55%), Gaps = 25/151 (16%) Query: 13 HGTTF-RVRYQETDQMGVVYHANYLSWFESGRTEMFRELGFAYRSLENMGVLLPVTTADL 71 HG T RVRY ETDQMGVVY+ANYL+W E GRTE FRELG Y +E +LLPVT A Sbjct: 3 HGETLIRVRYAETDQMGVVYYANYLAWLEVGRTEYFRELGMPYSEVEKNDILLPVTKAFC 62 Query: 72 QFKSPARYDDLVAVYARLTTFSALRVVYEYEIRRLAGTETGDPEAFGLAGGSAPADVEQL 131 Q+KSPARYDD V V + + +R++++YE+ R + Sbjct: 63 QYKSPARYDDEVRVVTSIASLQEVRILFKYELFR------------------------RQ 98 Query: 132 PGELLVTGSTSHVWLNTDWKPVRLDRVLPEL 162 ELL G T H ++N +PV L + P L Sbjct: 99 TNELLAIGETEHAFVNRQGRPVVLKKYNPFL 129 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,116,831,396 Number of extensions: 45213297 Number of successful extensions: 96612 Number of sequences better than 1.0e-05: 945 Number of HSP's gapped: 96390 Number of HSP's successfully gapped: 945 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)