BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0333.0001.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBP8.1 B3KBP8_9BACI Putative uncharacterized protein                134   4e-30
B1DDW3.1 B1DDW3_9BACL Putative uncharacterized protein                 94   3e-18

>B3KBP8.1 B3KBP8_9BACI Putative uncharacterized protein
          Length = 141

 Score =  134 bits (336), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 87/134 (64%), Gaps = 2/134 (1%)

Query: 1   MIGTLALGFYLVLPFILSGTAKLSASAKEGTLSXXXXGGFNRFAQYGLVIQLLTGGYMIS 60
           M+GT ALGFYL+LPF++ G  KLS  A+EG ++       NRFAQYGLVIQLLTGGYM+S
Sbjct: 10  MVGTAALGFYLILPFVVGGIQKLSLGAQEGAVNTIRVA--NRFAQYGLVIQLLTGGYMMS 67

Query: 61  QGDYTVAWMXXXXXXXXAMFALGGIMGKPLRLAAAGMRENRDVSGHTAKLRTLSXXXXXX 120
           QG+Y+V WM        AMFA+GGIM KPL+ A AG+RE R+V   T+KL TLS      
Sbjct: 68  QGEYSVPWMIIVTVLLLAMFAIGGIMSKPLKNALAGIREKREVKEETSKLGTLSALLALL 127

Query: 121 XXXXXXXXXYRHII 134
                    + HII
Sbjct: 128 LLVMIFFMVFNHII 141


>B1DDW3.1 B1DDW3_9BACL Putative uncharacterized protein
          Length = 141

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 2/114 (1%)

Query: 1   MIGTLALGFYLVLPFILSGTAKLSASAKEGTLSXXXXGGFNRFAQYGLVIQLLTGGYMIS 60
           ++G + +GFY+VLP ++    KL+   + G          NR  QY L++QLLTGGYM+S
Sbjct: 10  LLGAVGMGFYIVLPIMIGKATKLAGLGQGGLADGLVSA--NRIVQYALIVQLLTGGYMMS 67

Query: 61  QGDYTVAWMXXXXXXXXAMFALGGIMGKPLRLAAAGMRENRDVSGHTAKLRTLS 114
           Q DY+VAWM        A+ A+ GIM KPL+   + +++ +  +GH AK RT S
Sbjct: 68  QADYSVAWMIIVTVLFLAIAAISGIMSKPLKRIVSSIQDGQSATGHIAKARTFS 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 595,629,612
Number of extensions: 18712231
Number of successful extensions: 38371
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 38369
Number of HSP's successfully gapped: 2
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)